A. J. Allen
Newcastle University
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Featured researches published by A. J. Allen.
Physical Review A | 2015
George Stagg; A. J. Allen; N. G. Parker; Carlo F. Barenghi
In a recent experiment, Kwon et al. [Phys. Rev. A 90, 063627 (2014)] generated a disordered state of quantum vortices by translating an oblate Bose-Einstein condensate past a laser-induced obstacle and studied the subsequent decay of vortex number. Using mean-field simulations of the Gross-Pitaevskii equation, we shed light on the various stages of the observed dynamics. We find that the flow of the superfluid past the obstacle leads initially to the formation of a classical-like wake, which later becomes disordered. Following removal of the obstacle, the vortex number decays due to vortices annihilating and drifting to the boundary. Our results are in excellent agreement with the experimental observations. Furthermore, we probe thermal effects through phenomenological dissipation.
Physical Review A | 2013
A. J. Allen; E. Zaremba; Carlo F. Barenghi; N. P. Proukakis
We study the dynamics of vortices in finite temperature atomic Bose-Einstein condensates, focussing on decay rates, precession frequencies and core brightness, motivated by a recent experiment (Freilich et al. Science 329, 1182 (2010)) in which real-time dynamics of a single vortex was observed. Using the ZNG formalism based on a dissipative Gross-Pitaevskii equation for the condensate coupled to a semi-classical Boltzmann equation for the thermal cloud, we find a rapid nonlinear increase of both the decay rate and precession frequency with increasing temperatures. The increase, which is dominated by the dynamical condensate-thermal coupling is also dependent on the intrinsic thermal cloud collisional dynamics; the precession frequency also varies with the initial radial coordinate. The integrated thermal cloud density in the vortex core is for the most part independent of the position of the vortex (except when it is near the condensate edge) with its value increasing with temperature. This could potentially be used as a variant to the method of Coddington et al. (Phys. Rev. A 70, 063607 (2004)) for experimentally determining the temperature.
Journal of Hospital Infection | 2017
Simon W. Davis; A. J. Allen; R. O'Leary; M. Power; D.A. Price; A.J. Simpson; A. Tunbridge; Luke Vale; M. Whiteside; C. Evans; M. Raza
BACKGROUND Clinical diagnostic sensitivity alone is inadequate in the diagnosis of influenza. Polymerase chain reaction (PCR) testing is sensitive but the inherent delays in result availability potentially prolong time to isolation and treatment. Until recently no near-patient test (NPT) has demonstrated adequate sensitivity for routine clinical use. AIM To evaluate diagnostic accuracy, time to result availability, clinical impact, and cost consequences of Alere™ i Influenza A&B NPT (Alere Inc., Waltham, MA, USA) using off-label throat swabs. METHODS Prospective, multi-centre [four UK National Health Service (NHS) hospitals], diagnostic accuracy cohort study with cost modelling. Throat swab samples from suspected influenza patients were tested for influenza using the reference standard of PCR; a second throat swab was tested using NPT. FINDINGS A total of 827 participants were recruited; 589 were suitable for analysis: sensitivity was 75.8% [95% confidence interval (CI): 67.0-84.6]; specificity was 96.8% (95% CI: 95.2-98.3). Sensitivity varied between Sheffield (Northern General Hospital: 82.1%; Royal Hallamshire Hospital: 83.3%) and other sites (Doncaster Royal Infirmary: 71.4%; Newcastles Royal Victoria Infirmary: 50.0%) whereas specificity was high (92-100%). Positive predictive value (PPV) was 81.2% (95% CI: 72.9-89.5) with negative predictive value 95.6% (95% CI: 93.9-97.4) with observed prevalence of 15.4%. Median time to result for PCR was 1.1 days (on-site laboratories) and 5.2 days (remote laboratories). Isolation findings: 75% influenza positive not isolated; 69% of isolated participants did not have influenza. For a cohort of 1000 participants, annual estimated non-diagnostic cost savings with NPT are £215,040. CONCLUSION This first prospective study of the Alere i NPT using throat swabs demonstrates high specificity, high PPV during seasonal epidemics, and rapid result availability which could lead to substantial cost savings.
Physical Review A | 2014
A. J. Allen; N. G. Parker; N. P. Proukakis; Carlo F. Barenghi
Joint Quantum Centre (JQC) Durham-Newcastle, School of Mathematics and Statistics,Newcastle University, Newcastle upon Tyne, NE1 7RU, England, UK.(Dated: January 29, 2014)The generation of isotropic vortex con gurations in trapped atomic Bose-Einstein condensateso ers a platform to elucidate quantum turbulence on mesoscopic scales. We demonstrate thata laser-induced obstacle moving in a gure-eight path within the condensate provides a simpleand e ective means to generate an isotropic three-dimensional vortex tangle due to its minimal nettransfer of angular momentum to the condensate. Our characterisation of vortex structures and theirisotropy is based on projected vortex lengths and velocity statistics obtained numerically via theGross-Pitaevskii equation. Our methodology provides a possible experimental route for generatingand characterising vortex tangles and quantum turbulence in atomic Bose-Einstein condensates.
arXiv: Quantum Gases | 2015
George Stagg; A. J. Allen; Carlo F. Barenghi; N. G. Parker
We reinvestigate numerically the classic problem of two-dimensional superfluid flow past an obstacle. Taking the obstacle to be elongated (perpendicular to the flow), rather than the usual circular form, is shown to promote the nucleation of quantized vortices, enhance their subsequent interactions, and lead to wakes which bear striking similarity to their classical (viscous) counterparts. Then, focussing on the recent experiment of Kwon et al. (arXiv:1403.4658) in a trapped condensate, we show that an elliptical obstacle leads to a cleaner and more efficient means to generate two-dimensional quantum turbulence.
Physical Review A | 2012
N. G. Parker; A. J. Allen; Carlo F. Barenghi; N. P. Proukakis
We show that the interaction between vortices and sound waves in atomic Bose-Einstein condensates can be elucidated in a double-well trap: with one vortex in each well, the sound emitted by each precessing vortex can be driven into the opposing vortex (if of the same polarity). This cross-talk leads to a periodic exchange of energy between the vortices which is long-range and highly efficient. The increase in vortex energy (obtained by numerical simulations of the Gross-Pitaevskii equation) is significant and experimentally observable as a migration of the vortex to higher density over just a few precession periods. Similar effects can be controllably engineered by introducing a precessing localised obstacle into one well as an artificial generator of sound, thereby demonstrating the parametric driving of energy into a vortex.
Physical Review A | 2011
A. J. Allen; D. P. Jackson; Carlo F. Barenghi; N. P. Proukakis
A long-range soliton interaction is discussed whereby two or more dark solitons interact in an inhomogeneous atomic condensate, modifying their respective dynamics via the exchange of sound waves without ever coming into direct contact. An idealized double-well geometry is shown to yield perfect energy transfer and complete periodic identity reversal of the two solitons. Two experimentally relevant geometries are analyzed which should enable the observation of this long-range interaction.
Physical Review A | 2016
S. J. Rooney; A. J. Allen; U. Zülicke; N. P. Proukakis; A. S. Bradley
We simulate the dissipative evolution of a vortex in a trapped finite-temperature dilute-gas Bose-Einstein condensate using first-principles open-systems theory. Simulations of the complete stochastic projected Gross-Pitaevskii equation for a partially condensed Bose gas containing a single quantum vortex show that the transfer of condensate energy to the incoherent thermal component without population transfer provides an important channel for vortex decay. For the lower temperatures considered, this effect is significantly larger that the population transfer process underpinning the standard theory of vortex decay, and is the dominant determinant of the vortex lifetime. A comparison with the Zaremba-Nikuni-Griffin kinetic (two-fluid) theory further elucidates the role of the particle transfer interaction, and suggests the need for experimental testing of reservoir interaction theory. The dominance of this particular energetic decay mechanism for this open quantum system should be testable with current experimental setups, and its observation would have broad implications for the dynamics of atomic matter waves and experimental studies of dissipative phenomena.
Diagnostic and Prognostic Research | 2018
A. J. Allen; R. A. O’Leary; Simon W. Davis; S. Graziadio; W. S. Jones; A.J. Simpson; D.A. Price; Luke Vale; M. Power
BackgroundInfluenza is an acute viral infection of the respiratory tract. A rapid confirmatory diagnosis of influenza is important, since it is highly transmissible and outbreaks of influenza within the hospital setting increase morbidity and mortality. The objective of this study was to evaluate the cost implications, from the perspective of the UK NHS, of using on-label nasal swabs with the Alere™ i Influenza A & B test in a near patient setting.MethodsA cost consequence model was developed. The time horizon of the model was from hospital admission on suspicion of influenza until the end of treatment (following a diagnosis of influenza or discharge from hospital). Data on the prevalence of influenza and the sensitivity and specificity of the Alere™ i Influenza A & B test came from two prospective observational diagnostic accuracy studies. Costs were obtained from published resources. Uncertainties in the model data were investigated using deterministic, one-way sensitivity analyses.ResultsUsing the Alere™ i Influenza A & B point of care test with nasal swabs (on label) in NHS medical assessment units and emergency departments could save approximately £242,730 per 1000 adults presenting with influenza-like symptoms. The main cause for this was reduced times to availability of the result compared with the laboratory RT-PCR test. Other key drivers of savings were the cost of isolation, the prevalence of influenza, the specificity of the test, and the availability of isolation resources.ConclusionsThe Alere™ i Influenza A & B point of care test would have greatest impact in hospitals that have extensive delays in the time to receive a result. Sensitivity analyses identified the model parameters which would have greatest effect on the result and confirmed that assumptions were conservative, i.e. did not change key results.
arXiv: Quantum Gases | 2014
A. J. Allen; N. G. Parker; N. P. Proukakis; Carlo F. Barenghi
Weakly interacting, dilute atomic Bose-Einstein condensates (BECs) have proved to be an attractive context for the study of nonlinear dynamics and quantum effects at the macroscopic scale. Recently, atomic BECs have been used to investigate quantum turbulence both experimentally and theoretically, stimulated largely by the high degree of control which is available within these quantum gases. In this article we motivate the use of atomic BECs for the study of turbulence, discuss the characteristic regimes of turbulence which are accessible, and briefly review some selected investigations of quantum turbulence and recent results. We focus on three stages of turbulence - the generation of turbulence, its steady state and its decay - and highlight some fundamental questions regarding our understanding in each of these regimes.