Agnese Petraccioli

A novel satellite DNA isolated in Pecten jacobaeus shows high sequence similarity among molluscs

The aim of this work is to investigate the sequence conservation and the evolution of repeated DNA in related species. Satellite DNA is a component of eukaryotic genomes and is made up of tandemly repeated sequences. These sequences are affected by high rates of mutation that lead to the occurrence of species-specific satellite DNAs, which are different in terms of both quantity and quality. In this work, a novel repetitive DNA family, named PjHhaI sat, is described in Pecten jacobaeus. The quantitative analyses revealed a different abundance of this element in the molluscan species investigated in agreement with the “library hypothesis” even if, in this case, at a high taxonomic level. In addition, the qualitative analysis demonstrated an astonishing sequence conservation not only among scallops but also in six other molluscan species belonging to three classes. These findings suggest that the PjHhaI sat may be considered as the most ancients of DNA described so far, which remained “frozen” during molluscan evolution. The widespread distribution of this sat DNA in molluscs as well as its long evolutionary preservation open up questions on the functional role of this element. A future challenge might be the identification of proteins or molecules which interact with the PjHhaI sat.

Chromosomal rearrangements occurred repeatedly and independently during species diversification in Malagasy geckos, genus Paroedura

We conducted a phylogenetic study through karyological data, by standard staining and Ag-NOR banding, and molecular analysis (by 12S and 16S mitochondrial rRNA genes and nuclear gene C-mos) on 11 species of Malagasy geckos, genus Paroedura, and two relatives (Ebenavia inunguis and Uroplatus phantasticus). Ebenavia inunguis and 17. phantasticus had 2n = 36 telocentric elements, NORs on the first chromosome pair in E. inunguis, and on the third chromosome pair in U. phantasticus. All examined Paroedura showed NORs on the smallest chromosome pair; moreover, six of the eleven examined species show a 2n = 36 karyotype, with a pair of metacentrics and 17 telocentric pair. The remaining species exhibited karyotypes with a diploid chromosome number ranging from 2n = 31 to 2n = 38. We assume that these karyotype assemblages derived from the 2n = 36 karyotype by cryptic and/or simple rearrangements, such as inversions, fissions and fusions. Furthermore, molecular and/or chromosomal data indicate that Paroedura is a monophyletic genus, in which chromosome rearrangements occurred repeatedly and independently during the specific diversification. Moreover both P. bastardi and P. gracilis in current definitions are paraphyletic assemblages of several related species, since their population proves more closely related to P. ibityensis or P. oviceps than co-specific populations. Key words: chromosome, Gekkonidae, Madagascar, Paroedura, molecular phylogeny.

Laser microdissection-based analysis of the Y sex chromosome of the Antarctic fish Chionodraco hamatus (Notothenioidei, Channichthyidae)

Abstract Microdissection, DOP-PCR amplification and microcloning were used to study the large Y chromosome of Chionodraco hamatus, an Antarctic fish belonging to the Notothenioidei, the dominant component of the Southern Ocean fauna. The species has evolved a multiple sex chromosome system with digametic males showing an X1YX2 karyotype and females an X1X1X2X2 karyotype. Fluorescence in situ hybridization, performed with a painting probe made from microdissected Y chromosomes, allowed a deeper insight on the chromosomal rearrangement, which underpinned the fusion event that generated the Y. Then, we used a DNA library established by microdissection and microcloning of the whole Y chromosome of Chionodraco hamatus for searching sex-linked sequences. One clone provided preliminary information on the presence on the Y chromosome of the CHD1 gene homologue, which is sex-linked in birds but in no other vertebrates. Several clones from the Y-chromosome mini-library contained microsatellites and transposable elements, one of which mapped to the q arm putative fusion region of the Y chromosome. The findings confirm that interspersed repetitive sequences might have fostered chromosome rearrangements and the emergence of the Y chromosome in Chionodraco hamatus. Detection of the CHD1 gene in the Y sex-determining region could be a classical example of convergent evolution in action.

Chromosomes of Lepidochitona caprearum (Scacchi, 1836) (Polyplacophora, Acanthochitonina, Tonicellidae) provide insights into Acanthochitonina karyological evolution

Abstract We describe the karyotype, location of nucleolus-organizing regions (NORs) and heterochromatin composition and distribution in Lepidochitona caprearum (Scacchi, 1836). The examined specimens had 2n=24 chromosomes; the elements of pairs 1–4 were metacentric, subtelocentric those of the fifth pair, telocentric the elements of other pairs. NOR-FISH, Ag-NOR- and CMA3 banding showed NORs localized on pericentromeric regions of a medium small sized, telocentric chromosome pair. After C-banding or digestions with restriction enzyme NOR associate heterochromatin only was cytologically evident, resulting CMA3 positive. The comparison with chromosome data of other chitons, other than to evidence a karyotypic similarity of Lepidochitona caprearum to species of suborder Acanthochitonina, allows us to infer that chromosome evolution in the suborder mainly occurred via reduction of the number of the chromosomes by centric fusions, which took place repeatedly and independently in the different lineages of Acanthochitonina.

Karyological evidence for diversification of Italian slow worm populations (Squamata, Anguidae)

Abstract A karyological analysis on six Italian populations the slow worm (Anguis veronensis Pollini, 1818) was performed and their genetic differentiation at the mitochondrial 16S rRNA gene fragment from a Spanish sample has been assessed. The Italian populations were karyologically uniform, all showing 2n=44 elements, of which 20 were macrochromosomes and 24 microchromosomes. Comparison with literature data on Central European populations showed a difference on the morphology of the 10th chromosome pair: submetacentric in Italian populations and telocentric in the Central European ones. Our analysis showed the presence of a fragile site on chromosomes of this pair, suggesting its propensity for structural rearrangements. Analysis of the 16S rRNA gene fragment showed uniformity among Italian populations (uncorrected genetic distance of 0.4%), and their genetic distinctness from the Spanish individual (uncorrected genetic distance of 4.2%). Our results confirm the existence of two different Anguis fragilis Linnaeus, 1758 lineages, each one characterized by a different cytotype.

Characterization of two major satellite DNAs specific to the genus Discoglossus (Amphibia, Anura)

Abstract Two new high repetitive DNAs were isolated from Discoglossus pictus genomic DNA digested with StuI. Sequence analysis of clones indicated two types of repetitive units 143–148 bp and 170–177 bp long, respectively. Southern blot analyses show ladders of bands indicating that both repetitive units are organized in long tandem arrays and belong to two different satellite DNAs that were named Dp-sat2 and Dp-sat3. A similar ladder of bands was also produced when genomic DNA was digested with ClaI in the case of Dp-sat2, or with ScaI in the case of Dp-sat3. Quantitative dot-blot analyses indicate that Dp-sat2 and Dp-sat3 account for about 2.6% and 2.2%, respectively, of the D. pictus genome. Considering that D. pictus has a genomic DNA content of 10.5 pg/N, our data indicate that Dp-sat2 and Dp-sat3 repetitive units are present in about 2.3×106 and 1.6×106 copies per diploid genome, respectively. Dp-sat2 and Dp-sat3 probes produced the same patterns of hybrid bands in Southern blots and the same genomic content in dot-blots in all the other Discoglossus species, except D. montalentii which showed a different band pattern and genomic content. The chromosomal distribution of the two StuI satellites shows some similarities: both Dp-sat2 and Dp-sat3 probes mainly labelled the pericentromeric regions of the large chromosome pairs 1–5 and 7. Moreover, probes from both satellite DNAs also produced faint fluorescent mini-spots along almost all chromosome pairs. These data suggest that both satellite DNAs have two types of organization, one in long arrays localized in pericentromeric positions, and the other in short arrays dispersed in the genome.

Novel Repeated DNAs in the Antarctic Polyplacophoran Nuttallochiton mirandus (Thiele, 1906)

Within the scope of a project on the characterization of satellite DNAs in polar mollusks, the Antarctic chiton Nuttallochitonmirandus (Thiele, 1906) was analyzed. Two novel families of tandemly repeated DNAs, namely NmH and NmP, are described in their structure and chromosomal localization, and, furthermore, their presence was analyzed in related species. Data reported here display a particular variability in the structural organization of DNA satellites within this species. Processes driving satellite evolution, which are likely responsible for the intriguing variability of the identified satellite DNAs, are discussed.

Seasonal variation in glycoconjugates of the pedal glandular system of the rayed Mediterranean limpet, Patella caerulea (Gastropoda: Patellidae).

Glycoconjugates secreted by the pedal system of the rayed limpet, Patella caerulea, were characterised in situ by histochemical and lectin-histochemical methods in individuals collected around the annual cycle, in November, March, and June. Stainings with periodic acid-Schiff (PAS), Alcian blue pH 2.5 (AB pH 2.5), Alcian blue pH 1.0 (AB pH 1.0), high-iron diamine-Alcian blue pH 2.5 and lectin binding assays with 9 lectins (Con A, WGA, succinylated-WGA, PNA, DBA, SBA, AAA, UEA-I, LTA) were performed. Four secreting cell types were observed in the sole, one in the peripheric region, and two in the sidewall. Glycoconjugate composition varied among cell types and also in one and the same cell type throughout the year. β-Elimination followed by PAS and AB pH 2.5 stainings indicated that most saccharidic chains were O-linked to the protein backbone. Secretion by sole and peripheric region was acidic, carboxylated and/or sulfated, whereas that of the sidewall was neutral. Glucosaminylated and 1,4-fucosylated residuals were predominant in the cell types along the year, 1,2-fucosylated residuals being observed only in the sidewall cells in June. Mannosylated and/or glycosylated residuals were observed in all cells mostly in November. Galactosylated/galactosaminylated residuals were present mostly in the sidewall cells and in the sole subepidermal mucocytes in June. Mannosylated and/or glycosylated residuals in November are probably linked to gonad maturation or to higher locomotion and foraging activity, whereas galactosaminylation in the sole cells and 1,2-fucosylation and glucosaminylation in the sidewall cells in June are linked to a prolonged stationary state, increasing water adsorption to counteract dehydration and/or to modulate microbial interactions.

Karyological divergence of a Moldovan population of Rana dalmatina Bonaparte, 1838

A karyological study conducted by both conventional and banding staining methods (Ag-NOR-, CMA3, and C-banding) evidenced a peculiar heterochromatin pattern on chromosomes of Moldovan specimens of the agile frog, Rana dalmatina. As is normal for all agile frogs, the Moldovan population presented 2n = 26 chromosomes, with NOR loci on the short arms of the third chromosome pair, but differed in showing heavy centromeric, CMA3 positive C-bands on the seventh chromosome pair, and light centromeric, DAPI positive C-bands on five chromosome pairs. In contrast, Moldovan specimens showed no significant difference in two segments of the 16S mitochondrial rRNA gene and in the S1 satellite DNA sequence and organization, in comparison with the GenBank deposited 16S rDNA and S1 DNA satellite sequences of R. dalmatina. Molecular similarity and chromosomal differences between agile frogs from Moldovan and extra-Moldovan populations are discussed.

Comparative Cytogenetic Study in Four Alopiinae Door Snails (Gastropoda, Clausiliidae)

ABSTRACT A cytogenetic study was carried out by means of standard and NOR-FISH staining methods on the chromosomes of four Alopiinae door snails, two species of the Delimini tribe (Siciliaria paestana and Papillifera bidens) and two species of Medorini tribe (Leucostigma candidescens and Medora sp.). The two Delimini species and Medora sp. showed similar karyotypes, concerning the number of chromosomes, 2n = 62, and the first metacentric pair of chromosomes clearly bigger than the other pairs, but differed in the number of the telocentric pairs: none in P. bidens, four in S. paestana and, even, 21 in Medora sp. Leucostigma candidescens had 2n = 48, all biarmed chromosomes. Loci of NORs were on a single medium small chromosome pair in all the four studied species. The obtained results evidence a relevant degree of intergeneric karyotypic diversity in Alopiinae, concerning both chromosome number and/or shape. The data allow us to make a hypothesis on the evolutionary chromosome trends for this door snail subfamily.