Agus Sabdono

ANTIBACTERIAL PROPERTY OF A CORAL-ASSOCIATED BACTERIUM PSEUDOALTEROMONAS LUTEOVIOLACEA AGAINST SHRIMP PATHOGENIC VIBRIO HARVEYI (IN VITRO STUDY)

A coral-associated bacterium was successfully screened for secondary metabolites production based on PCR amplification of the nonribosomal peptide synthetase gene and was identified as closely related to Pseudoalteromonas luteoviolacea based on its 16S rDNA. The bacterium was found to inhibit the growth of shrimp pathogenic bacterium tested, Vibrio harveyi. To characterize the inhibiting metabolite, a 279 bp long DNA fragment was obtained and the deduced amino acid sequence showed conserved signature regions for peptide synthetases and revealed a high similarity to NosD (40% identity), a multifunctional peptide synthetase from Nostoc sp. GSV224, and NdaB (44% identity), a peptide synthetase module of Nodularia spumigena

Isolation, Identification And Screening Antibacterial Activity from Marine Sponge-Associated Fungi Against Multidrug-Resistant (MDR) Escherichia coli

Irrational used of antibiotic in several decades ago causing resistant in bacteria and decreasing the cure rate of infectious diseases. Multidrug-resistant (MDR) Escherichia coli is known to cause various of infectious diseases such as urinary tract infection, nosocomial bloodstream infection, meningitis, bacteraemia, and gastrointestinal disease. Marine sponge-associated fungi have potential as source of new compound to combat MDR E. coli. The aims of this research were to isolate marine sponge-assosiated fungi, to screen potential fungi against MDR E. coli, to identify the potential fungi and its host sponge. There were 29 marine sponge-associated fungi successfully isolated from 9 sponges. Among 29 sponge-associated fungi screened, there were 7 isolates showed antibacterial activity against MDR E. coli. The best inhibition zone produced by MPS 14.1/MT 02 and MPS 14.3/MT 04 from sponge PP.SP.16.14. According to fungi identification result fungus MPS 14.1/MT 02 was identified as Trichoderma asperellum while MPS 14.3/MT 04 was identified as Trichoderma reesei. Sponge identification leaded the PP.SP.16.14 as Cinachyrella sp.

Identification Sponges-Associated Fungi From Karimunjawa National Park

Marine sponges are rich sources of bioactive substances with various pharmacological activities. Previous studies have shown that most bioactive compounds were originally produced by associated-microorganisms. Fungi associated with the marine sponges collected off Karimunjawa National Park were isolated and identified by morphological characteristics and molecular level analyses based on internal transcribed spacer (ITS) regions. A total of 2 isolates which were characterized, the fungi Penicillium spinulosum and Trichoderma virens have been revealed.

Molecular Identification and Genetic Diversity of Acropora hyacinthus from Boo and Deer Island, Raja Ampat, West Papua

Indonesia lies at the centre of biodiversity for corals. However, the reefs suffered from extensive human exploitation. Marine Protected Areas is thought to be best solution to protect coral reefs ecosystem. Understanding genetic diversity is crucial for effective management of the MPAs, however genetic diversity is rarely been corporate in designing an MPA. Moreover, many MPAs are uneffectively manage due to poor designated and demarcated.Raja Ampat which is located in western tip of West Papua, was designated as a park to mitigatethreatsand protect the valuable marine resources.Scleractinian corals in the genus Acropora are among the most dominant distributed in Raja Ampat waters, including the species of Acroporahyacinthus.The research aimed to analyze genetic diversity and to describe the kinship relationship of Acroporahyacinthus between 2 populations: Boo Island and Deer Island, Raja Ampat. Genetic marker Cytochrome Oxidase I (CO I) of the mitochondrial genome DNA (mtDNA) was used to analyze genetic diversity. Reconstruction of phylogenetic tree and genetic diversity were made by usingsoftware MEGA 5.05 (Moleculer Evolutionary Genetics Analysis). The results of this research indicatecorals A. hyacinthus from Boo Island and Deer Island Raja Ampat are in the low category of genetic diversity and overall had a close genetic relationship of kinship. This is likely due to the small size of the population and few numbers of samples that may not represent the population.

Anti-Pathogenic Activity of Coral Bacteria Againts White Plaque Disease of Coral Dipsastraea from Tengah Island, Karimunjawa

Coral disease is main factor of degrading coral reefs, such as White Plaque (WP) disease that cause loss of epidermal tissue of corals. The purposes of this research were to identify the bacteria associated with White Plaque Disease of coral Dipsastraea and to investigate coral bacteria that have antipathogenic potency against White Plaque Disease by Coral Dipsastraea. Sampling was carried out by purposive method in Tengah Island, Karimunjawa on March 2015. Streak method was used to isolate and purify coral bacteria, while overlay and agar diffusion method were used to test antibacterial activity. Identification of selected bacteria was conducted by biochemical and molecular methods. Polyphasic identification of bacteria associated with diseased coral White Plague of Dipsastraea. It is found that TFWP1, TFWP2, TFWP3 and TFWP4 were closely related to Bacillus antracis, Virgibacillus olivae, Virgibacillus salarius and Bacillus mojavensis, respectively. While antipathogen activity bacterial isolates, NM1.3, NM1.8 and NM2.3 were closely related to Pseudoalteromonas flavipulchra, Pseudoalteromonas piscicida, and Vibrio azureus, respectively. Phylogenetic data on microbial community composition in coral will help with the knowledge in the biological control of coral diseases.

Protease Producers Predominate Cultivable Hydrolytic Bacteria Isolated from Liquid Biomedical Waste

Inadequate management of healthcare waste is a serious concern in many developing countries including Indonesia due to the risks posed to human health and the environment [1,2]. Previous investigation revealed that the biomedical waste contains mixed bacterial community with some being pathogenic and pose a public health hazard to both health workers and other community members. For example, in Nepal the healthcare liquid wastes were laden with MDR bacteria and seemed to pose a huge public health threat in the transfer of such resistance to the bacterial pathogens causing community acquired infections. Therefore, adequate treatment measures should be given to all biomedical waste before disposal [3,4]. Today, newer waste treatment facilities including plasma pyrolysis, encapsulation, inertization have been introduced, to replace older facilities such as incineration as toxic fumes Protease Producers Predominate Cultivable Hydrolytic Bacteria Isolated from Liquid Biomedical Waste

Different Eye Physiology of Mud Crab (Scylla Serrata) in Different Life Stage Found in Semarang Territorial Waters

Mud crabs use their eyes function to guide their movement activities i.e., to avoid predator and to support their environment orientation. In tropical environment such as Indonesia, mud crabs live in mangrove area as their habitat. To support their visual acuity, mud crabs depend on the number of con sell as photoreceptor and carapace width. The purpose of this study is to prove whether mud crab eye physiology is different between life stages (juvenile, sub-adult and adult stadia) especially in Semarang territorial water. Histology methods were used to determine the density of cone cell on three life stages. The highest number of eye cell in juvenile, sub-adult and adult are 25, 15 and 13 units, respectively and found in frontal inner side. The visual acuity in juvenile is 6.005×10-3-7.46×10-3; sub-adult is 9.17×10-3-15.4×10-3; and the adult is 16.03×10-3-19.6×10-3. The results indicate that the increase of visual acuity follows the growth of carapace width in mud crabs.

Resources Management Strategy For Mud Crabs (Scylla spp.) In Pemalang Regency

The aim of this research is to develop resources management strategies of mud crab (Scylla spp.) in Pemalang Regency. The method used is descriptive survey in a case study. This research used primary data and secondary data. Primary data were collected through field observations and in-depth interviews with key stakeholders. Secondary data were collected from related publications and documents issued by the competent institutions. SWOT Analysis was used to inventory the strengths, weaknesses, opportunities and threats. TOWS matrix was used to develop an alternative of resources management strategies. SWOT analysis was obtained by 6 alternative strategies that can be applied for optimization of fisheries development in Pemalang Regency. The strategies is the control of mud crab fishing gear, restricted size allowable in mud crab, control of mud crab fishing season, catch monitoring of mud crab, needs a management institutions which ensure the implementation of the regulation, and implementation for mud crab aquaculture. Each alternative strategy can be synergized to optimize the resources development in Pemalang Regency.

Exploration of Fungal Association From Hard Coral Against Pathogen MDR Staphylococcus haemolyticus

Staphylococcus haemolyticus are opportunistic bacteria and as the second leading cause of nosocomial infections. It is a disease causing septicemia, peritonitis, otitis, and urinary tract infections and infections of the eye. It also a phenotype resistant to multiple antibiotics commercial. There is now an urgency to find an alternative antibiotics to combat this bacteria. It has been widely reported that many bioactive marine natural products from marine invertebrate have striking similarities to metabolites of their associated microorganisms including fungi. Hard coral associated microorganisms are among of the most interesting and promising marine natural product sources, which produce with various biological activities. The proposed work focused on the discovery of bioactive compounds and also estimated the phylogenetic diversity from fungal association of hard coral against pathogen MDR Staphylococcus haemolyticus. A total of 32 fungal association, FHP 7 which were isolated from Favia sp. capable of inhibiting the growth MDR. Molecular identification based on 18S rRNA gene sequences revealed that the active fungal association belonged 100% to the members from one of the genera Trichoderma longibrachiatum. Accession Number LC185084.1.

Isolation, Characterisation and Antagonistic Activity of Bacteria Symbionts Hardcoral Pavona sp. Isolated from Panjang Island, Jepara Against Infectious Multi-drug Resistant (MDR) Bacteria

Pavona sp. is highly spread over Indonesian waters including Panjang Island. Several studies showed that bacteria symbionts hardcoral were the big source of antibiotic product, but there was limited research of the bacteria symbionts with hardcoral Pavona sp. In this research bacteria symbionts from hardcoral Pavona sp. had been collected from Panjang Island, Jepara. Marine bacteria symbionts were isolated by serial dillution method, while antibacterial activity was performed by using overlay and agar block method. The total of 2 from 5 isolates were active to MDR bacteria such as Enterobacter aerogenes and Acinetobacter baumanii, the code were PHC 44/04 and PHC 44/05. Then both of them were identified by morphological and molecular DNA characterization using 16 S rRNA gene sequence. The result of 16 S rRNA identification shows PHC 44/04 has 99% similarities with Virgibacillus salarius strain sa-Vb 1, while PHC 44/05 shows 99% similarities with Pseudoalteromonas flavipulchra strain NCIMB 2033.