Alt Zantema

Cyclin D1 is an essential mediator of apoptotic neuronal cell death.

Many neurons in the developing nervous system undergo programmed cell death, or apoptosis. However, the molecular mechanism underlying this phenomenon is largely unknown. In the present report, we present evidence that the cell cycle regulator cyclin D1 is involved in the regulation of neuronal cell death. During neuronal apoptosis, cyclin D1‐dependent kinase activity is stimulated, due to an increase in cyclin D1 levels. Moreover, artificial elevation of cyclin D1 levels is sufficient to induce apoptosis, even in non‐neural cell types. Cyclin D1‐induced apoptosis, like neuronal apoptosis, can be inhibited by 21 kDa E1B, Bcl2 and pRb, but not by 55 kDa E1B. Most importantly, however, overexpression of the cyclin D‐dependent kinase inhibitor p16INK4 protects neurons from apoptotic cell death, demonstrating that activation of endogenous cyclin D1‐dependent kinases is essential during neuronal apoptosis. These data support a model in which neuronal apoptosis results from an aborted attempt to activate the cell cycle in terminally differentiated neurons.

Localization of the E1B proteins of adenovirus 5 in transformed cells, as revealed by interaction with monoclonal antibodies

Monoclonal antibodies, one against the adenovirus type 5 E1B 55-kDa protein and one against the E1B 21-kDa protein, have been isolated and shown to recognize the same proteins as antitumor sera. Immunofluorescence studies with these monoclonal antibodies on transformed cells containing the complete adenovirus early region 1, showed that the E1B 21-kDa protein is localized in the perinuclear region. The E1B 55-kDa protein is localized in a number of different sites: a strong fluorescence is observed in a discrete body in the cytoplasm close to the nucleus, a moderate fluorescence is found in cell-cell contacts, and a weak staining in the cytoplasm. The cellular p53 antigen, which is associated with the E1B 55-kDa protein, is also found in the discrete cytoplasmic body, but not, or only in small amounts at the cell-cell contacts. However, p53 is not seen in the cytoplasm outside the discrete body, but the nucleus is weakly positive. The nature of the discrete cytoplasmic body was investigated further by electron microscopy and was found to be composed of a cluster of 8-nm filaments. The diameter of the filaments is similar to that of cytoskeletal intermediate filaments. However, staining with antibodies against the various intermediate filament proteins did not show a significant reaction with the cluster, while vimentin intermediate filaments could be demonstrated in the cells in a typical cytoskeletal pattern. It was also shown that the cluster is not composed of incorrectly aggregated tubulin.

Genome-wide assessment of differential roles for p300 and CBP in transcription regulation

Despite high levels of homology, transcription coactivators p300 and CREB binding protein (CBP) are both indispensable during embryogenesis. They are largely known to regulate the same genes. To identify genes preferentially regulated by p300 or CBP, we performed an extensive genome-wide survey using the ChIP-seq on cell-cycle synchronized cells. We found that 57% of the tags were within genes or proximal promoters, with an overall preference for binding to transcription start and end sites. The heterogeneous binding patterns possibly reflect the divergent roles of CBP and p300 in transcriptional regulation. Most of the 16 103 genes were bound by both CBP and p300. However, after stimulation 89 and 1944 genes were preferentially bound by CBP or p300, respectively. Target genes were found to be primarily involved in the regulation of metabolic and developmental processes, and transcription, with CBP showing a stronger preference than p300 for genes active in negative regulation of transcription. Analysis of transcription factor binding sites suggest that CBP and p300 have many partners in common, but AP-1 and Serum Response Factor (SRF) appear to be more prominent in CBP-specific sequences, whereas AP-2 and SP1 are enriched in p300-specific targets. Taken together, our findings further elucidate the distinct roles of coactivators p300 and CBP in transcriptional regulation.

Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes.

ABSTRACT The transcriptional coactivator p300 regulates transcription by binding to proteins involved in transcription and by acetylating histones and other proteins. These transcriptional effects are mainly at promoter and enhancer elements. Regulation of transcription also occurs through scaffold/matrix attachment regions (S/MARs), the chromatin regions that bind the nuclear matrix. Here we show that p300 binds to the S/MAR binding protein scaffold attachment factor A (SAF-A), a major constituent of the nuclear matrix. Using chromatin immunoprecipitations, we established that both p300 and SAF-A bind to S/MAR elements in the transiently silent topoisomerase I gene prior to its activation at G1 during cell cycle. This binding is accompanied by local acetylation of nucleosomes, suggesting that p300-SAF-A interactions at S/MAR elements of nontranscribed genes might poise these genes for transcription.

Cascade of Distinct Histone Modifications during Collagenase Gene Activation

ABSTRACT Gene activation in eukaryotes requires chromatin remodeling, in part via histone modifications. To study the events at the promoter of a mitogen-inducible gene, we examined the induction of expression of the collagenase gene. It has been established that the collagenase gene can be activated by c-Jun and c-Fos and that the transcriptional coactivator p300 is involved in the activation. As expected, we found histone acetyltransferase activity at the collagenase promoter during activation. Interestingly, we also found histone methyltransferase and kinase activity. Strikingly, the first modification observed is methylation of histone H3 lysine 4, which correlates with the binding of the SET9 methyltransferase and the assembly of a complex consisting of c-Jun, c-Fos, TATA binding protein, and RNA polymerase II. The assembly of the preinitiation complex also shows an ordered binding of the acetyltransferase p300, the RSK2 kinase, and the SWI/SNF component Brg-1. Our results suggest that collagenase gene activation involves a dynamic recruitment of different factors and that in addition to acetylation, histone H3 lysine 4 di- and trimethylation and histone H3 serine 10 phosphorylation are important steps in the activation of this gene.

The PHD Type Zinc Finger Is an Integral Part of the CBP Acetyltransferase Domain

ABSTRACT Histone acetyltransferases (HATs) such as CBP and p300 are regarded as key regulators of RNA polymerase II-mediated transcription, but the critical structural features of their HAT modules remain ill defined. The HAT domains of CBP and p300 are characterized by the presence of a highly conserved putative plant homeodomain (PHD) (C4HC3) type zinc finger, which is part of the functionally uncharacterized cysteine-histidine-rich region 2 (CH2). Here we show that this region conforms to the PHD type zinc finger consensus and that it is essential for in vitro acetylation of core histones and the basal transcription factor TFIIE34 as well as for CBP autoacetylation. PHD finger mutations also reduced the transcriptional activity of the full-length CBP protein when tested on transfected reporter genes. Importantly, similar results were obtained on integrated reporters, which reflect a more natural chromatinized state. Taken together, our results indicate that the PHD finger forms an integral part of the enzymatic core of the HAT domain of CBP.

Protein kinase C-α is an upstream activator of the IκB kinase complex in the TPA signal transduction pathway to NF-κB in U2OS cells

Inactive nuclear factor κB (NF-κB) complexes are retained in the cytoplasm by binding to inhibitory proteins, such as IκBα. Various stimuli lead to phosphorylation and subsequent processing of IκBα in the 26S proteasome and import of the active NF-κB transcription factor into the nucleus. In agreement with our previous finding that p90rsk1 is essential for TPA-induced activation of NF-κB in Adenovirus 5E1-transformed Baby Rat Kidney cells, we now report that the MEK/ERK/p90rsk1 inhibitor U0126 efficiently blocks TPA-induced IκBα processing in these cells. However, in U2OS cells, the cytokine-inducible IκB kinase complex (IKK) is the essential component of the TPA signal transduction pathway. Activation of the IKK complex in response to TPA is mediated by PKC-α, since both the PKC inhibitor GF109203 and a catalytically inactive PKC-α mutant inhibit activation of endogenous IKK by TPA, but not by tumor necrosis factor-α (TNF-α). We conclude that IKK is an integrator of TNF-α and TPA signal transduction pathways in U2OS cells.

A specific lysine in c-Jun is required for transcriptional repression by E1A and is acetylated by p300

The adenovirus E1A protein regulates transcription of cellular genes via its interaction with the transcriptional coactivators p300/CBP. The collagenase promoter activated by the c‐Jun protein is repressed by E1A. Here we show that E1A repression is specific for c‐Jun, as E1A does not repress the collagenase promoter activated by the homologous transcription factor EB1. Using chimeras of c‐Jun and EB1, we demonstrate that a 12 amino acid region in the basic region of the c‐Jun DNA‐binding domain is essential for repression by E1A. Since repression requires the binding of p300 to E1A, we studied the involvement of p300 acetyltransferase activity in the repression mechanism. We demonstrate that c‐Jun is acetylated in vivo, and mutational analysis identified Lys271 in the c‐Jun basic region to be essential for repression of the collagenase promoter by E1A. In addition, Lys271 is acetylated both in vitro and in vivo. These results suggest that the specific repression of the collagenase promoter by E1A involves acetylation of c‐Jun.

The N-terminal transactivation domain of ATF2 is a target for the co-operative activation of the c-jun promoter by p300 and 12S E1A

The adenovirus E1A proteins activate the c-jun promoter through two Jun/ATF-binding sites, jun1 and jun2. P300, a transcriptional coactivator of several AP1 and ATF transcription factors has been postulated to play a role in this activation. Here, we present evidence that p300 can control c-jun transcription by acting as a cofactor for ATF2: (1) Over-expression of p300 was found to stimulate c-jun transcription both in the presence and absence of E1A. (2) Like E1A, p300 activates the c-jun promoter through the jun1 and jun2 elements and preferentially activates the N-terminal domain of ATF2. (3) Co-immunoprecipitation assays of crude cell extracts indicate that endogenous p300/CBP(-like) proteins and ATF2 proteins are present in a multiprotein complex that can bind specifically to the jun2 element. We further demonstrate that the Stress-Activated-Protein-Kinase (SAPK) target sites of ATF2, Thr69 and Thr71 are not required for the formation of the p300/CBP-ATF2 multiprotein complex. These data indicate that E1A does not inhibit all transcription activation functions of p300, and, in fact, cooperates with p300 in the activation of the ATF2 N-terminus.

cDNA micro array identification of a gene differentially expressed in adenovirus type 5- versus type 12-transformed cells

Proteins encoded by non‐oncogenic adenovirus type 5 and oncogenic adenovirus type 12 differentially affect expression of a number of cellular genes. We have used cDNA micro array analysis to identify a cellular gene that is expressed in Ad12‐ but not in Ad5‐transformed cells. This cellular gene was found to be the gene encoding follistatin‐related protein, a TGF‐β inducible gene. Consistently, a constitutive factor binding to Smad binding elements was found in adenovirus type 12‐transformed cells.