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Dive into the research topics where Amanda Stanley is active.

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Featured researches published by Amanda Stanley.


Ecology Letters | 2011

How do plant ecologists use matrix population models

Elizabeth E. Crone; Eric S. Menges; Martha M. Ellis; Timothy J. Bell; Paulette Bierzychudek; Johan Ehrlén; Thomas N. Kaye; Tiffany M. Knight; Peter Lesica; William F. Morris; Gerard Oostermeijer; Pedro F. Quintana-Ascencio; Amanda Stanley; Tamara Ticktin; Teresa Valverde; Jennifer L. Williams

Matrix projection models are among the most widely used tools in plant ecology. However, the way in which plant ecologists use and interpret these models differs from the way in which they are presented in the broader academic literature. In contrast to calls from earlier reviews, most studies of plant populations are based on < 5 matrices and present simple metrics such as deterministic population growth rates. However, plant ecologists also cautioned against literal interpretation of model predictions. Although academic studies have emphasized testing quantitative model predictions, such forecasts are not the way in which plant ecologists find matrix models to be most useful. Improving forecasting ability would necessitate increased model complexity and longer studies. Therefore, in addition to longer term studies with better links to environmental drivers, priorities for research include critically evaluating relative/comparative uses of matrix models and asking how we can use many short-term studies to understand long-term population dynamics.


Ecology | 2000

Plant carbon-nutrient interactions control CO2 exchange in Alaskan wet sedge tundra ecosystems.

Loretta C. Johnson; Gaius R. Shaver; Deb H. Cades; Edward B. Rastetter; Knute J. Nadelhoffer; Anne E. Giblin; J. A. Laundre; Amanda Stanley

We explored the long-term (8-yr) effects of separate field manipulations of temperature and nutrient availability on carbon balance in wet sedge tundra near the Arctic Long Term Ecological Research (LTER) site at Toolik Lake, Alaska. Our goals were (1) to assess the relative importance of chronic warming (with field greenhouses) and increased N and P availability (by fertilization) in controlling gross ecosystem photosynthesis, ecosystem respiration (plant plus heterotrophic respiration), and ultimately ecosystem C balance; and (2) to attempt to partition ecosystem responses to these treatments between plant and soil contributions. We present results of the effects of these manipulations on whole-system CO2 exchange over seasonal and diel cycles, and on nonrhizosphere soil microbial respiration using in situ soil incubations. Wet sedge control plots were, at best, a weak sink for carbon even during the peak growing season. Chronic nutrient additions of N + P shifted wet sedge carbon balance to a strong sink throughout the growing season; nutrient availability regulated seasonal and diel CO2 exchanges in these two wet sedge ecosystems. The N + P plots had significantly higher photosynthesis and ecosystem respiration in spite of the unanticipated effect of ∼30% reduction in thaw depth in these plots, apparently due to a twofold increase in litter accumulation insulating the soil surface and/or possible shading from greater plant cover in these plots. These results highlighted the prevailing importance of nutrient–carbon interactions in controlling ecosystem processes and ecosystem C balance in arctic tundra. In contrast, warming had only subtle effects on CO2 exchanges. Increased temperatures in the warmed plots had little effect on instantaneous rates of photosynthesis or respiration. After eight years of chronic warming with an average 5.6°C higher air temperature over the growing season and a 40–200% increase in net N mineralization rate, it was surprising that warming did not have more profound effects on CO2 exchange and plant cover. If there were an effect of warming, increased temperatures might cause early canopy development and lengthen the growing season, rather than directly affect instantaneous rates of photosynthesis. Based on photosynthesis–light response curves developed from the early- and late-season diel measurements, we demonstrated that the main effect of warming was to accelerate the development of the canopy early in the season. By midseason, however, there were no significant differences in C exchange between warmed and control plots. Perhaps the most important and novel result emerging from this study is the prevailing importance of plant C exchange, not soil processes, in driving ecosystem C fluxes. First, nonrhizosphere soil microbial respiration as estimated CO2 flux from in situ soil incubations was a small fraction of whole-system respiration and did not vary among treatments. This suggests that anaerobic conditions or some other factor may limit soil microbial respiration more than do temperature or nutrients. Second, plant respiration contributed most (90%) of the ecosystem respiration in fertilized plots. This unanticipated and large contribution from plant respiration highlights the critical importance of understanding the response of plant respiration to global environmental change in these wet sedge ecosystems.


Northwest Science | 2011

Restoring Invaded Pacific Northwest Prairies: Management Recommendations from a Region-Wide Experiment

Amanda Stanley; Peter W. Dunwiddie; Thomas N. Kaye

Abstract We conducted a 5-year study at 10 sites from British Columbia to the Willamette Valley aimed at improving methods for restoring degraded prairies and oak savannas. Our manager-recommended treatment combinations were applied over 4 years and included the following components: spring and fall mowing, grass-specific and broad-spectrum herbicide, and fall burning. All treatment combinations were crossed with native seed addition. As expected, we found there was no ‘silver bullet’; while some treatment combinations led to large improvements in weed control and native diversity and abundance, the optimum combination and degree of success varied across sites. Where non-native grasses are the most pressing problem, we recommend the use of grass-specific herbicides as highly effective with minimal non-target effects on native forbs and some native grasses. Fire is a useful tool for preparing a site for seeding and can be followed closely with a broad spectrum herbicide to control rapidly resprouting weeds. Careful timing of post-fire herbicide application avoids impacting later-sprouting natives. At all sites, we recommend seed addition to enhance native diversity and abundance, as our data show even relatively high quality sites are strongly seed-limited. Repeat mowing is ineffective at reducing herbaceous weed abundance. Additionally, mowing did not increase bare soil, resulting in poor seedling establishment. If fire is not an option, we recommend testing additional treatments to increase bare soil and seeding success. At all sites, we conclude that enhancing natives and controlling invasives are likely to be most successful through repeated applications of treatment combinations.


Ecology | 2012

Inversion of plant dominance–diversity relationships along a latitudinal stress gradient

Paul J. Richardson; Andrew S. MacDougall; Amanda Stanley; Thomas N. Kaye; Peter W. Dunwiddie

Species interactions affect plant diversity through the net effects of competition and facilitation, with the latter more prevalent in physically stressful environments when plant cover ameliorates abiotic stress. One explanation for species loss in invader-dominated systems is a shift in the competition-facilitation balance, with competition intensifying in areas formerly structured by facilitation. We test this possibility with a 10-site prairie meta-experiment along a 500-km latitudinal stress gradient, quantifying the relationships among abiotic stress, exotic dominance, and native plant recruitment over five years. The latitudinal gradient is inversely correlated with abiotic stress, with lower latitudes more moisture- and nutrient-limited. We observed strong negative effects by invasive dominant grasses on plant establishment, but only in northern sites with lower-stress environments. At these locations, disturbance was critical for recruitment by reducing the suppressive dominant (invasive) canopy. In more stressful environments to the south, the impacts of the dominant invaders on plant establishment became facilitative, and diversity was more limited by seed availability. Disturbance prevented recruitment because seedling survival depended on a protective plant canopy, presumably because the canopy reduced temperature or moisture stress. Seed limitation was similarly prevalent in all sites. Our work confirms the importance of facilitation as an organizing process for plants in higher-stress environments, even with transformations of species composition and dominance. It also demonstrates that the mechanisms regulating diversity, including invader impacts, can vary within the same plant community depending on environmental context. Because limits on native plant recruitment are environmentally contingent, management strategies that seek to increase diversity, including invader eradication, must account for site-level variations in the balance between biotic and abiotic constraints.


Ecological Restoration | 2011

Multiple Treatment Combinations and Seed Addition Increase Abundance and Diversity of Native Plants in Pacific Northwest Prairies

Amanda Stanley; Thomas N. Kaye; Peter W. Dunwiddie

Invasive plants, especially non-native perennial grasses, are a critical threat to remnant prairies and oak savannas in the Pacific Northwest. Managers must control non-native plants without adversely impacting native species in fragmented prairie remnants. We describe results of a collaborative experiment replicated at 10 sites along a 500 km latitudinal gradient. Our objectives were to develop and test treatment combinations that reduce target non-native weeds with minimal nontarget impacts and increase native species diversity and abundance. By replicating experiments across the ecoregion, we tested strategies for widespread applicability. We compared four different combinations of seed addition and disturbance treatments comprising herbicide (sethoxydim and glyphosate), fire, and mowing. Each combination was created to target various factors likely to limit restoration in this system, including invasive species, litter accumulation, and limited dispersal of native species. After three years, the treatment combinations varied widely in their effectiveness. The most disturbance-intensive treatment combination (joint application of sethoxydim, burning, and postfire glyphosate) led to reduced abundance of non-native grasses and forbs without causing a decline in native species. Sethoxydim combined with fall mowing reduced non-native grasses, caused no change in non-native forbs, and increased total cover of native plants. In all cases, disturbance treatments reduced non-native cover to varying degrees but had no positive impact on native diversity except when seeds were added. Our results show that a combined treatment approach employing a variety of strategies codesigned by managers and ecologists is an efficient and effective way to improve degraded grasslands.


Native Plants Journal | 2008

Regional strategies for restoring invaded prairies: Observations from a multisite, collaborative research project

Amanda Stanley; Thomas N. Kaye; Peter W Dunwiddie

Invasive plants, especially nonnative perennial grasses, pose one of the most critical threats to protected prairies and oak woodlands in the Pacific Northwest. Our current knowledge regarding the effectiveness of weed control methods, especially in sites that retain a significant component of native vegetation, is largely anecdotal or based on results from a few site-specific studies. The Nature Conservancy jointly with the Institute for Applied Ecology and its partners have initiated a large-scale, long-term, interdisciplinary, and collaborative project to: 1) evaluate and improve strategies for controlling the abundance of invasive nonnative herbaceous weeds while maintaining or enhancing the abundance and diversity of native plant species; and 2) develop an approach to generalize results so they can be applied by land managers engaged in prairie stewardship throughout the region. This project combines simultaneous small-scale replicated experiments with large-scale unreplicated experiments at 11 sites in Washington, Oregon, and British Columbia. Experimental treatments, begun in 2005, include combinations of spring and fall mowing, burning, a grass-specific herbicide (sethoxydim), a broad-spectrum herbicide (glyphosate), and seeding of native species. Our preliminary observations show sethoxydim applications effectively reduce exotic perennial grasses. Combining sethoxydim with other treatments had added benefits: fall burning reduced thatch and moss cover, glyphosate application 1 to 2 wk after burning reduced broadleaf weeds, and seed addition increased native diversity.


Ecology | 2012

Matrix population models from 20 studies of perennial plant populations

Martha M. Ellis; Jennifer L. Williams; Peter Lesica; Timothy J. Bell; Paulette Bierzychudek; Marlin L. Bowles; Elizabeth E. Crone; Daniel F. Doak; Johan Ehrlén; Albertine C. Ellis-Adam; Kathryn McEachern; Rengaian Ganesan; Penelope Latham; S.H. Luijten; Thomas N. Kaye; Tiffany M. Knight; Eric S. Menges; William F. Morris; Hans C. M. den Nijs; Gerard Oostermeijer; Pedro F. Quintana-Ascencio; J. Stephen. Shelly; Amanda Stanley; Andrea S. Thorpe; Tamara Ticktin; Teresa Valverde; Carl W. Weekley

Demographic transition matrices are among the most commonly applied population models for both basic and applied ecological research. The relatively simple framework of these models and simple, easily interpretable summary statistics they produce have prompted the wide use of these models across an exceptionally broad range of taxa. Here, we provide annual transition matrices and observed stage structures/population sizes for 20 perennial plant species which have been the focal species for long-term demographic monitoring. These data were assembled as part of the “Testing Matrix Models” working group through the National Center for Ecological Analysis and Synthesis (NCEAS). The data represent 82 populations with >460 total population-years of observations. It is our hope that making these data available will help promote and improve our ability to monitor and understand plant population dynamics. The complete data sets corresponding to abstracts published in the Data Papers section of the journal are publ...


Ecological Applications | 2011

Provenance, life span, and phylogeny do not affect grass species' responses to nitrogen and phosphorus.

Eric W. Seabloom; Cara D. Benfield; Elizabeth T. Borer; Amanda Stanley; Thomas N. Kaye; Peter W. Dunwiddie

Successful conservation management requires an understanding of how species respond to intervention. Native and exotic species may respond differently to management interventions due to differences arising directly from their origin (i.e., provenance) or indirectly due to biased representations of different life history types (e.g., annual vs. perennial life span) or phylogenetic lineages among provenance (i.e., native or exotic origin) groups. Thus, selection of a successful management regime requires knowledge of the life history and provenance-bias in the local flora and an understanding of the interplay between species characteristics across existing environmental gradients in the landscape. Here we tested whether provenance, phylogeny, and life span interact to determine species distributions along natural gradients of soil chemistry (e.g., soil nitrogen and phosphorus) in 10 upland prairie sites along a 600-km latitudinal transect running from southern Vancouver Island in British Columbia, Canada, to the Willamette Valley in Oregon, USA. We found that soil nitrate, phosphorus, and pH exerted strong control over community composition. However, species distributions along environmental gradients were unrelated to provenance, life span, or phylogenetic groupings. We then used a greenhouse experiment to more precisely measure the response of common grass species to nitrogen and phosphorus supply. As with the field data, species responses to nutrient additions did not vary as a function of provenance, life span, or phylogeny. Native and exotic species differed strongly in the relationship between greenhouse-measured tolerance of low nutrients and field abundance. Native species with the greatest ability to maintain biomass production at low nutrient supply rates were most abundant in field surveys, as predicted by resource competition theory. In contrast, there was no relationship between exotic-species biomass at low nutrient levels and field abundance. The implications of these findings for management of invasive species are substantial in that they overturn a general belief that reduction of nutrient supplies favors native species. The idiosyncratic nature of species response to nutrients in this study suggests that manipulation of nutrient supplies is unlikely to alter the overall balance between native and exotic species, although it may well be useful to control specific exotic species.


Conservation Biology | 2013

Ability of matrix models to explain the past and predict the future of plant populations.

Elizabeth E. Crone; Martha M. Ellis; William F. Morris; Amanda Stanley; Timothy J. Bell; Paulette Bierzychudek; Johan Ehrlén; Thomas N. Kaye; Tiffany M. Knight; Peter Lesica; Gerard Oostermeijer; Pedro F. Quintana-Ascencio; Tamara Ticktin; Teresa Valverde; Jennifer L. Williams; Daniel F. Doak; Rengaian Ganesan; Kathyrn Mceachern; Andrea S. Thorpe; Eric S. Menges


Conservation Biology | 2001

The Scientific Foundations of Habitat Conservation Plans: a Quantitative Assessment

Elaine K. Harding; Elizabeth E. Crone; Bret D. Elderd; Jonathan M. Hoekstra; Alexa J. McKerrow; John D. Perrine; Jim Regetz; Leslie J. Rissler; Amanda Stanley; Eric L. Walters

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Jennifer L. Williams

University of British Columbia

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Eric S. Menges

Archbold Biological Station

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Tamara Ticktin

University of Hawaii at Manoa

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