Amber-Robyn Childs

Movements of undersized spotted grunter (Pomadasys commersonnii) in the Great Fish Estuary, South Africa: implications for fisheries management

The purpose of this study was to test the hypothesis that an estuarine species as the spotted grunter Pomadasys commersonnii is evenly distributed within the estuary and uniformly exploited by different groups of fishers. This was done by investigating the movements and area use of spotted grunter in relation to the fisheries. The position of 20 acoustically tagged fish was recorded during 36 days in February and March 2003, by manual tracking and automated data logging receivers. Information on the fisheries in the estuary was collected through visual registration of fishing effort and interviews. The spotted grunter moved on average 1.0 km (SD ± 0.7) between positional fixes. Most of the fish were positioned in the lower part of the 12 km long estuary, as 70% of the positional fixes were within the first 3 km, and 89% within the first 6 km. Approximately half (49%) of all the fixes were between 1.0 and 1.5 km from the estuary mouth. The spotted grunter used on average 4.9 km (SD ± 4.9) of the length of the estuary, and there was no significant relationship between the length of the estuary used and the body length of the fish (26–39 cm TL). Subsistence fishers accounted for 73% of fishing lines in the water, while recreational fishers accounted for the rest. Ninety-three percent of the lines were recorded within the first 6 km from the estuary mouth, of which 80% were recorded within the first 3 km. Almost 1/3 of the fishing effort was recorded between 1.0 and 1.5 km from the mouth. The hypothesis that the estuarine dependent species spotted grunter was evenly distributed within the estuary was rejected. However, there was a significant relationship between the distribution of the fishing effort of the subsistence fishers and the fish, indicating that the spotted grunter was uniformly exploited within the estuary by this group of fishers. In contrast, there was no relationship between the distribution of fish and recreational anglers.

elementr: An R package for reducing elemental data from LA‐ICPMS analysis of biological calcified structures

1. Elemental analysis of biological calcified structures (e.g. fish otoliths, mollusc shelves, coral skeletons or fish and shark bones) provides invaluable information regarding ecological processes for many aquatic species. Despite this importance, the reduction of the raw data obtained through Laser-ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICPMS) (i.e. the conversion of the machine raw signal into elemental concentrations) remains a challenge as the tools developed so far for carrying out this task have important limitations for aquatic ecologists. 2. Here, we introduce the elementr R-package which provides a handy, reliable and transparent way to reduce elemental data acquired from spot or transect LA-ICPMS analysis of biological calcified structures. This free and open-source software, implemented based on state-of-the-art literature, handles data from both standards and samples, allowing fast and simultaneous calculations of concentration for any chemical element, correction for potential machine drift, and realignment and averaging for sample replicates when needed. 3. The major attributes of elementr are: (i) its user-friendly graphical interface which provides widgets to set all the reduction settings (i.e. no programming skills are required to run it), (ii) its reactivity whereby the software continuously observes any setting change made by the user, re-calculates and displays all updated results, allowing therefore users to visually check the validity of their settings and to tune them if needed and (iii) an object oriented underlying that facilitates subsequent handling of LA-ICPMS data in R. 4. Despite the elementr design being most suited to the needs of aquatic ecologists, its use could be broadened to other research fields (i.e. geology, material engineering) due to its flexibility. Moreover, the open-source approach used for programming this software allows its expansion in order to refine calculation procedures or to add new functionalities.

Influences of selected geophysical and environmental drivers on the movement patterns of Rhabdosargus holubi in a southern African estuary

A total of 21 juvenile Cape stumpnose (Rhabdosargus holubi) were tagged with internal acoustic transmitters in the lower, middle and upper reaches of the Kowie Estuary, South Africa. The movements of all fishes were continually monitored for five months using 22 stationary data-logging acoustic receivers, positioned along the length of the estuary. Diel and tidal cycles were identified in the movements of several individual R. holubi; however the lack of extensive movements for most individuals emphasised high residency of the species to particular sections of the estuary. River inflow and water temperature significantly affected the movement behaviour of most tagged R. holubi. Periods of increased freshwater inflow and rising riverine temperatures prompted certain individuals to shift their position downstream, while reduced sea temperatures in the lower reaches prompted certain individuals to shift their position further upstream from the mouth. Given the predicted effects of climate change in the study region, which include increased river inflow due to catchment rainfall and decreased sea temperatures due to ocean upwelling, these results suggest that R. holubi may be sensitive to the environmental effects of global warming and that the distribution and movement behaviour of this species in southern African estuaries is likely to be affected as climate change proceeds.

Movement Behaviour of Largemouth Bass Micropterus salmoides in a South African Impoundment

The objectives of this study were to describe movements and area use patterns of largemouth bass Micropterus salmoides in relation to abiotic factors (water temperature, river inflow and water level). The study was conducted in the Kubusi arm of Wriggleswade Dam, Eastern Cape, South Africa where nine largemouth bass (310–385 mm FL) were surgically implanted with individually coded acoustic transmitters and monitored for nine months (May 2010 to January 2011) using an array of five moored acoustic data-logging receivers. The daily position occupied by largemouth bass was significantly affected by water temperature (P < 0.001) and river inflow (P < 0.001), whereas water level had no effect. Largemouth bass spent little or no time in the shallow river inlet areas when water temperature was <12.5 °C, but as water temperature increased, their utilisation of shallow areas increased significantly. The results from this study demonstrate the importance of environmental factors, particularly water temperature, on the movement of largemouth bass.