Andrew A. Turnipseed

Winter forest soil respiration controlled by climate and microbial community composition.

Most terrestrial carbon sequestration at mid-latitudes in the Northern Hemisphere occurs in seasonal, montane forest ecosystems. Winter respiratory carbon dioxide losses from these ecosystems are high, and over half of the carbon assimilated by photosynthesis in the summer can be lost the following winter. The amount of winter carbon dioxide loss is potentially susceptible to changes in the depth of the snowpack; a shallower snowpack has less insulation potential, causing colder soil temperatures and potentially lower soil respiration rates. Recent climate analyses have shown widespread declines in the winter snowpack of mountain ecosystems in the western USA and Europe that are coupled to positive temperature anomalies. Here we study the effect of changes in snow cover on soil carbon cycling within the context of natural climate variation. We use a six-year record of net ecosystem carbon dioxide exchange in a subalpine forest to show that years with a reduced winter snowpack are accompanied by significantly lower rates of soil respiration. Furthermore, we show that the cause of the high sensitivity of soil respiration rate to changes in snow depth is a unique soil microbial community that exhibits exponential growth and high rates of substrate utilization at the cold temperatures that exist beneath the snow. Our observations suggest that a warmer climate may change soil carbon sequestration rates in forest ecosystems owing to changes in the depth of the insulating snow cover.

Energy budget above a high-elevation subalpine forest in complex topography

Components of the energy budget were measured above a subalpine coniferous forest over two complete annual cycles. Sensible and latent heat fluxes were measured by eddy covariance. Bowen ratios ranged from 0.7 to 2.5 in the summer (June–September) depending upon the availability of soil water, but were considerably higher (∼3–6) during winter (December–March). Energy budget closure averaged better than 84% on a half-hourly basis in both seasons with slightly greater closure during the winter months. The energy budget showed a dependence on friction velocity (u ∗ ), approaching complete closure at u ∗ values greater than 1 m s −1 . The dependence of budget closure on u ∗ explained why energy balance was slightly better in the winter as opposed to summer, since numerous periods of high turbulence occur in winter. It also explained the lower degree of energy closure (∼10% less) during easterly upslope flow since these periods were characterized by low wind speeds ( U< 4ms −1 ) and friction velocities (u ∗ < 0. 5ms −1 ). Co-spectral analysis suggests a shift of flux density towards higher frequencies under conditions where closure was obtained. It is suggested that low frequency contributions to the flux and advection were responsible for the lack of day-time energy budget closure. These effects were reduced at high friction velocities observed at our site. Our ability to close the energy budget at night was also highly dependent on friction velocity, approaching near closure (∼90%) at u ∗ values between 0.7 and 1.1 m s −1 . Below this range, the airflow within the canopy becomes decoupled with the flow above. Above this range, insufficient temperature resolution of the sonic anemometer obscured the small temperature fluctuations, rendering measurements intractable.

Airflows and turbulent flux measurements in mountainous terrain: Part 1. Canopy and local effects

We have studied the effects of local topography and canopy structure on turbulent flux measurements at a site located in mountainous terrain within a subalpine, coniferous forest. Our primary aim was to determine whether the complex terrain of the site affects the accuracy of eddy flux measurements from a practical perspective. We observed displacement heights, roughness lengths, spectral peaks, turbulent length scales, and profiles of turbulent intensities that were comparable in magnitude and pattern to those reported for forest canopies in simpler terrain. We conclude that in many of these statistical measures, the local canopy exerts considerably more influence than does topographical complexity. Lack of vertical flux divergence and modeling suggests that the flux footprints for the site are within the standards acceptable for the application of flux statistics. We investigated three different methods of coordinate rotation: double rotation (DR), triple rotation (TR), and planar-fit rotation (PF). Significant variability in rotation angles at low wind speeds was encountered with the commonly used DR and TR methods, as opposed to the PF method, causing some overestimation of the fluxes. However, these differences in fluxes were small when applied to large datasets involving sensible heat and CO2 fluxes. We observed evidence of frequent drainage flows near the ground during stable, stratified conditions at night. Concurrent with the appearance of these flows, we observed a positive bias in the mean vertical wind speed, presumably due to subtle topographic variations inducing a flow convergence below the measurement sensors. In the presence of such drainage flows, advection of scalars and non-zero bias in the mean vertical wind speed can complicate closure of the mass conservation budget at the site.

Efficient Atmospheric Cleansing of Oxidized Organic Trace Gases by Vegetation

Volatiles Versus Vegetation Plants act as both global sources and sinks of highly reactive volatile organic compounds (VOCs). Models typically treat the uptake and degradation of these compounds as if they are mostly unreactive, like other more commonly studied biogenic gases such as ozone. A study by Karl et al. (p. 816, published online 21 October) suggests that VOCs may be more reactive than expected. By monitoring six field sites representing a range of deciduous ecosystems, several oxidized VOCs were found to have high deposition fluxes. Fumigation experiments in the laboratory confirmed that leaves are capable of oxidizing these compounds, and do so through an enzymatic detoxification or stress-response mechanism. Budgets for VOC flux in the atmosphere suggests that, on a global scale, plants may take up significant levels of VOCs in polluted regions, especially in the tropics. Deciduous trees enzymatically remove oxygenated volatile organic compounds from the atmosphere. The biosphere is the major source and sink of nonmethane volatile organic compounds (VOCs) in the atmosphere. Gas-phase chemical reactions initiate the removal of these compounds from the atmosphere, which ultimately proceeds via deposition at the surface or direct oxidation to carbon monoxide or carbon dioxide. We performed ecosystem-scale flux measurements that show that the removal of oxygenated VOC via dry deposition is substantially larger than is currently assumed for deciduous ecosystems. Laboratory experiments indicate efficient enzymatic conversion and potential up-regulation of various stress-related genes, leading to enhanced uptake rates as a response to ozone and methyl vinyl ketone exposure or mechanical wounding. A revised scheme for the uptake of oxygenated VOCs, incorporated into a global chemistry-transport model, predicts appreciable regional changes in annual dry deposition fluxes.

Temperature as a control over ecosystem CO2 fluxes in a high-elevation, subalpine forest.

We evaluated the hypothesis that CO2 uptake by a subalpine, coniferous forest is limited by cool temperature during the growing season. Using the eddy covariance approach we conducted observations of net ecosystem CO2 exchange (NEE) across two growing seasons. When pooled for the entire growing season during both years, light-saturated net ecosystem CO2 exchange (NEEsat) exhibited a temperature optimum within the range 7–12°C. Ecosystem respiration rate (Re), calculated as the y-intercept of the NEE versus photosynthetic photon flux density (PPFD) relationship, increased with increasing temperature, causing a 15% reduction in net CO2 uptake capacity for this ecosystem as temperatures increased from typical early season temperatures of 7°C to typical mid-season temperatures of 18°C. The ecosystem quantum yield and the ecosystem PPFD compensation point, which are measures of light-utilization efficiency, were highest during the cool temperatures of the early season, and decreased later in the season at higher temperatures. Branch-level measurements revealed that net photosynthesis in all three of the dominant conifer tree species exhibited a temperature optimum near 10°C early in the season and 15°C later in the season. Using path analysis, we statistically isolated temperature as a seasonal variable, and identified the dynamic role that temperature exhibits in controlling ecosystem fluxes early and late in the season. During the spring, an increase in temperature has a positive effect on NEE, because daytime temperatures progress from near freezing to near the photosynthetic temperature optimum, and Re values remain low. During the middle of the summer an increase in temperature has a negative effect on NEE, because inhibition of net photosynthesis and increases in Re. When taken together, the results demonstrate that in this high-elevation forest ecosystem CO2 uptake is not limited by cool-temperature constraints on photosynthetic processes during the growing-season, as suggested by some previous ecophysiological studies at the branch and needle levels. Rather, it is warm temperatures in the mid-summer, and their effect on ecosystem respiration, that cause the greatest reduction in the potential for forest carbon sequestration.

SPATIAL VARIABILITY OF TURBULENT FLUXES IN THE ROUGHNESS SUBLAYER OF AN EVEN-AGED PINE FOREST

The spatial variability of turbulent flow statistics in the roughness sublayer (RSL) of a uniform even-aged 14 m (= h) tall loblolly pine forest was investigated experimentally. Using seven existing walkup towers at this stand, high frequency velocity, temperature, water vapour and carbon dioxide concentrations were measured at 15.5 m above the ground surface from October 6 to 10 in 1997. These seven towers were separated by at least 100m from each other. The objective of this study was to examine whether single tower turbulence statistics measurements represent the flow properties of RSL turbulence above a uniform even-aged managed loblolly pine forest as a best-case scenario for natural forested ecosystems. From the intensive space-time series measurements, it was demonstrated that standard deviations of longitudinal and vertical velocities (σu, σw) and temperature (σT) are more planar homogeneous than their vertical flux of momentum (u*2) and sensible heat (H) counterparts. Also, the measured H is more horizontally homogeneous when compared to fluxes of other scalar entities such as CO2 and water vapour. While the spatial variability in fluxes was significant (>15 %), this unique data set confirmed that single tower measurements represent the ‘canonical’ structure of single-point RSL turbulence statistics, especially flux-variance relationships. Implications to extending the ‘moving-equilibrium’ hypothesis for RSL flows are discussed. The spatial variability in all RSL flow variables was not constant in time and varied strongly with spatially averaged friction velocity u*, especially when u* was small. It is shown that flow properties derived from two-point temporal statistics such as correlation functions are more sensitive to local variability in leaf area density when compared to single point flow statistics. Specifically, that the local relationship between the reciprocal of the vertical velocity integral time scale (Iw) and the arrival frequency of organized structures (ū/h) predicted from a mixing-layer theory exhibited dependence on the local leaf area index. The broader implications of these findings to the measurement and modelling of RSL flows are also discussed.

Carbon Sequestration Studied in Western U.S. Mountains

The U.S. carbon budget has been the focus of recent scientific debate [Fan et al., 1998; Pacala et al., 2001; Gurney et al., 2002] Even conservative estimates suggest that U.S. ecosystems take up a significant amount of carbon, largely as a result of historical land use practices [Houghton et al., 1999; Schimel et al.,2000; Pacala et al., 2001]. In the western United States, a key cause of carbon sequestration is fire suppression. Fire suppression, of course, also sets the stage for the catastrophic losses that are occurring during fire season 2002. Increases in fire due to the effects of fire suppression, increased prescribed burning and thinning, and climate change could significantly affect the national carbon budget. At the continental scale, a comprehensive research approach—the North American Carbon Program (NACP)—is planned to quantify carbon exchange and improve our understanding of the contributing processes [Wofsy and Harriss, 2002].

Modeling and measuring the nocturnal drainage flow in a high‐elevation, subalpine forest with complex terrain

[1] The nocturnal drainage flow of air causes significant uncertainty in ecosystem CO2, H2O, and energy budgets determined with the eddy covariance measurement approach. In this study, we examined the magnitude, nature, and dynamics of the nocturnal drainage flow in a subalpine forest ecosystem with complex terrain. We used an experimental approach involving four towers, each with vertical profiling of wind speed to measure the magnitude of drainage flows and dynamics in their occurrence. We developed an analytical drainage flow model, constrained with measurements of canopy structure and SF6 diffusion, to help us interpret the tower profile results. Model predictions were in good agreement with observed profiles of wind speed, leaf area density, and wind drag coefficient. Using theory, we showed that this one-dimensional model is reduced to the widely used exponential wind profile model under conditions where vertical leaf area density and drag coefficient are uniformly distributed. We used the model for stability analysis, which predicted the presence of a very stable layer near the height of maximum leaf area density. This stable layer acts as a flow impediment, minimizing vertical dispersion between the subcanopy air space and the atmosphere above the canopy. The prediction is consistent with the results of SF6 diffusion observations that showed minimal vertical dispersion of nighttime, subcanopy drainage flows. The stable within-canopy air layer coincided with the height of maximum wake-to-shear production ratio. We concluded that nighttime drainage flows are restricted to a relatively shallow layer of air beneath the canopy, with little vertical mixing across a relatively long horizontal fetch. Insight into the horizontal and vertical structure of the drainage flow is crucial for understanding the magnitude and dynamics of the mean advective CO2 flux that becomes significant during stable nighttime conditions and are typically missed during measurement of the turbulent CO2 flux. The model and interpretation provided in this study should lead to research strategies for the measurement of these advective fluxes and their inclusion in the overall mass balance for CO2 at this site with complex terrain.

The use of relaxed eddy accumulation to measure biosphere-atmosphere exchange of isoprene and other biological trace gases

Abstract The micrometeorological flux measurement technique known as relaxed eddy accumulation (REA) holds promise as a powerful new tool for ecologists. The more popular eddy covariance (eddy correlation) technique requires the use of sensors that can respond at fast rates (10 Hz), and these are unavailable for many ecologically relevant compounds. In contrast, the use of REA allows flux measurement with sensors that have much slower response time, such as gas chromatography and mass spectrometry. In this review, relevant micrometeorological details underlying REA are presented, and critical analytical and system design details are discussed, with the goal of introducing the technique and its potential applications to ecologists. The validity of REA for measuring fluxes of isoprene, a photochemically reactive hydrocarbon emitted by several plant species, was tested with measurements over an oak-hickory forest in the Walker Branch Watershed in eastern Tennessee. Concurrent eddy covariance measurements of isoprene flux were made using a newly available chemiluminesence instrument. Excellent agreement was obtained between the two techniques (r2 = 0.974, n = 62), providing the first direct comparison between REA and eddy covariance for measuring the flux rate of a reactive compound. The influence of a bias in vertical wind velocity on the accuracy of REA was examined. This bias has been thought to be a source of significant error in the past. Measurements of normalized bias () alone would lead us to think that a large potential error exists at this site. However, with our isoprene data and through simulations of REA with fast-response H2O and CO2 data, we conclude that accurate REA flux measurements can be made even in the presence of a bias in w.

Eddy covariance fluxes of peroxyacetyl nitrates (PANs) and NOy to a coniferous forest

up to approximately � 14 ng N m � 2 s � 1 . The average daytime flux peaked at � 6.0 ng N m � 2 s � 1 and accounted for � 20% of the daytime NOy flux. Calculations suggest minimum daytime surface resistances for PAN in the range of 70–130 s m � 1 .I t was estimated that approximately half of daytime uptake was through plant stomates. Average PAN deposition velocities, Vd(PAN), showed a daytime maximum of � 10.0 mm s � 1 ; however, deposition did not cease during nighttime periods. Vd(PAN) was highly variable at night and increased when canopy elements were wet from either precipitation or dew formation. Diel patterns of deposition velocity of MPAN and PPN were similar to that of PAN. These results suggest that deposition of PAN, at least to coniferous forest canopies, is much faster than predicted with current deposition algorithms. Although deposition of PAN is unlikely to compete with thermal dissociation during warm summer periods, it will likely play an important role in removing PAN from the atmosphere in colder regions or during winter. The fate of PAN at the surface and within the plants remains unknown, but may present a previously ignored source of nitrogen to ecosystems.