Andrew R. Lewis

A direct NMR method for the measurement of competitive kinetic isotope effects

We present a technique that uses (13)C NMR spectroscopy to measure kinetic isotope effects on the second-order rate constant (k(cat)/K(m)) for enzyme-catalyzed reactions. Using only milligram quantities of isotopically labeled substrates, precise competitive KIEs can be determined while following the ongoing reaction directly in a NMR spectrometer. Our results for the Vibrio cholerae sialidase-catalyzed hydrolysis of natural substrate analogs support a concerted enzymatic transition state for these reactions.

CF3 Derivatives of the Anticancer Ru(III) Complexes KP1019, NKP-1339, and Their Imidazole and Pyridine Analogues Show Enhanced Lipophilicity, Albumin Interactions, and Cytotoxicity.

The Ru(III) complexes indazolium [trans-RuCl4(1H-indazole)2] (KP1019) and sodium [trans-RuCl4(1H-indazole)2] (NKP-1339) are leading candidates for the next generation of metal-based chemotherapeutics. Trifluoromethyl derivatives of these compounds and their imidazole and pyridine analogues were synthesized to probe the effect of ligand lipophilicity on the pharmacological properties of these types of complexes. Addition of CF3 groups also provided a spectroscopic handle for (19)F NMR studies of ligand exchange processes and protein interactions. The lipophilicities of the CF3-functionalized compounds and their unsubstituted parent complexes were quantified by the shake-flask method to give the distribution coefficient D at pH 7.4 (log D7.4). The solution behavior of the CF3-functionalized complexes was characterized in phosphate-buffered saline (PBS) using (19)F NMR, electron paramagnetic resonance (EPR), and UV-vis spectroscopies. These techniques, along with fluorescence competition experiments, were also used to characterize interactions with human serum albumin (HSA). From these studies it was determined that increased lipophilicity correlates with reduced solubility in PBS but enhancement of noncoordinate interactions with hydrophobic domains of HSA. These protein interactions improve the solubility of the complexes and inhibit the formation of oligomeric species. EPR measurements also demonstrated the formation of HSA-coordinated species with longer incubation. (19)F NMR spectra show that the trifluoromethyl complexes release axial ligands in PBS and in the presence of HSA. In vitro testing showed that the most lipophilic complexes had the greatest cytotoxic activity. Addition of CF3 groups enhances the activity of the indazole complex against A549 nonsmall cell lung carcinoma cells. Furthermore, in the case of the pyridine complexes, the parent compound was inactive against the HT-29 human colon carcinoma cell line but showed strong cytotoxicity with CF3 functionalization. Overall, these studies demonstrate that lipophilicity may be a determining factor in the anticancer activity and pharmacological behavior of these types of Ru(III) complexes.

Transition State Analysis of Vibrio cholerae Sialidase-Catalyzed Hydrolyses of Natural Substrate Analogues

A series of isotopically labeled natural substrate analogues (phenyl 5-N-acetyl-α-d-neuraminyl-(2→3)-β-d-galactopyranosyl-(1→4)-1-thio-β-d-glucopyranoside; Neu5Acα2,3LacβSPh, and the corresponding 2→6 isomer) were prepared chemoenzymatically in order to characterize, by use of multiple kinetic isotope effect (KIE) measurements, the glycosylation transition states for Vibrio cholerae sialidase-catalyzed hydrolysis reactions. The derived KIEs for Neu5Acα2,3LacβSPh for the ring oxygen ((18)V/K), leaving group oxygen ((18)V/K), C3-S deuterium ((D)V/K(S)) and C3-R deuterium ((D)V/K(R)) are 1.029 ± 0.002, 0.983 ± 0.001, 1.034 ± 0.002, and 1.043 ± 0.002, respectively. In addition, the KIEs for Neu5Acα2,6βSPh for C3-S deuterium ((D)V/K(S)) and C3-R deuterium ((D)V/K(R)) are 1.021 ± 0.001 and 1.049 ± 0.001, respectively. The glycosylation transition state structures for both Neu5Acα2,3LacβSPh and Neu5Acα2,6LacβSPh were modeled computationally using the experimental KIE values as goodness of fit criteria. Both transition states are late with largely cleaved glycosidic bonds coupled to pyranosyl ring flattening ((4)H(5) half-chair conformation) with little or no nucleophilic involvement of the enzymatic tyrosine residue. Notably, the transition state for the catalyzed hydrolysis of Neu5Acα2,6βSPh appears to incorporate a lesser degree of general-acid catalysis, relative to the 2,3-isomer.

Raman spectroscopic study of the formation of polyacetylene within zeolite channels

Raman spectroscopy has been employed to study the polymerisation of acetylene on various zeolite substrates. Sodium mordenite (NaM) was determined to be an inefficient catalyst. The majority of the acetylene in this system was found to be in the form of monomers which were bound in a ‘side-on’ fashion to cation sites within the main mordenite channel. In contrast, caesium mordenite (CsM) samples facilitated the growth of trans-polyacetylene to a far greater degree. Furthermore, the use of elevated pressures of acetylene was also found to be beneficial to polymer formation. Finally, pretreatment of CsM with CCl4 enhanced the rate of polymer growth substantially. An explanation of these effects is given.

Water Oxidation by a Cytochrome P450: Mechanism and Function of the Reaction

P450cam (CYP101A1) is a bacterial monooxygenase that is known to catalyze the oxidation of camphor, the first committed step in camphor degradation, with simultaneous reduction of oxygen (O2). We report that P450cam catalysis is controlled by oxygen levels: at high O2 concentration, P450cam catalyzes the known oxidation reaction, whereas at low O2 concentration the enzyme catalyzes the reduction of camphor to borneol. We confirmed, using 17O and 2H NMR, that the hydrogen atom added to camphor comes from water, which is oxidized to hydrogen peroxide (H2O2). This is the first time a cytochrome P450 has been observed to catalyze oxidation of water to H2O2, a difficult reaction to catalyze due to its high barrier. The reduction of camphor and simultaneous oxidation of water are likely catalyzed by the iron-oxo intermediate of P450cam, and we present a plausible mechanism that accounts for the 1∶1 borneol:H2O2 stoichiometry we observed. This reaction has an adaptive value to bacteria that express this camphor catabolism pathway, which requires O2, for two reasons: 1) the borneol and H2O2 mixture generated is toxic to other bacteria and 2) borneol down-regulates the expression of P450cam and its electron transfer partners. Since the reaction described here only occurs under low O2 conditions, the down-regulation only occurs when O2 is scarce.

Enrichment of H217O from Tap Water, Characterization of the Enriched Water, and Properties of Several 17O-Labeled Compounds

A low-abundance form of water, H(2)(17)O, was enriched from 0.04% to ∼90% by slow evaporation and fractional distillation of tap water. The density and refractive index for H(2)(17)O are reported. Gas chromatography-mass spectrometry (GC-MS) of (16)O- and (17)O-1-hexanols and their trimethyl silyl ethers and of (16)O- and (17)O-hexamethyl disiloxanes was used to determine the percentage of (17)O enrichment in the H(2)(17)O. Furthermore, the chemical shifts of labeled and nonlabeled water dissolved in CDCl(3) differed sufficiently that we could verify the enrichment of H(2)(17)O. (17)O hexanol was synthesized by the reaction of iodohexane with Na(17)OH. (17)O-Labeled trimethylsilanol and (17)O-labeled hexamethyldisiloxane were prepared by the reaction of H(2)(17)O with bis(trimethylsilyl)trifluoroacetamide (BSTFA). To generate standards for (17)O NMR, H(2)(17)O(2), and (17)O camphor were prepared. H(2)(17)O was electrolyzed to form (17)O-labeled hydrogen peroxide which was quantified using two colorimetric assays. (17)O-Labeled camphor was prepared by exchanging the ketone oxygen of camphor using H(2)(17)O. The (17)O-labeled compounds were characterized using (17)O, (1)H, and (13)C NMR and GC-MS. While we were characterizing the labeled camphor, we also detected an unexpected oxygen exchange reaction of primary alcohols, catalyzed by electrophilic ketones such as camphor. The reaction is a displacement of the alcohol OH group by water. This is an example of the usefulness of (17)O NMR in the study of a reaction mechanism that has not been noticed previously.

Structural characterization of the new porous sodium silicate Mu-11 by 29Si and 23Na solid-state NMR

A variety of solid-state NMR techniques were applied in order to assign resonances in the 29Si and 23Na NMR spectra of a new crystalline silicate to crystallographically distinct silicon and sodium sites, respectively. Mu-11 is a zeolite-like material with a 1D channel system occupied by water and sodium cations whose framework contains both bridging and non-bridging oxygens. The observed 29Si isotropic chemical shifts did not allow a direct assignment. A preliminary assignment based on the electronegativities calculated for the four ligands around each silicon was supported by correlations between the extent of the distortion from an ideal tetrahedron and the measured chemical shift anisotropy for the different Si sites. 1H–29Si cross polarization experiments confirmed the assignments. The two crystallographically different sodium atoms were resolved by 23Na 3Q-MAS NMR, and an assignment for these two sites is proposed.

Flexible coordination of the carboxylate ligand in tin(II) amides and a 1,3-diaza-2,4-distannacyclobutanediyl

A series of tin(II) amido complexes possessing m-terphenyl carboxylate ligands have been prepared. These complexes, namely [(Me(3)Si)(2)NSn(mu-O(2)CC(6)H(2)Ph(3))](2), [(Me(3)Si)(2)NSn(mu-O(2)CC(6)H(3)Mes(2))](2), and [(Me(3)Si)(2)NSn(mu-O(2)CC(6)H(2)Mes(2)Me)](2) [Mes = 2,4,6-trimethylphenyl], are the first structurally characterized examples of tin(II) carboxylate complexes exhibiting discrete Sn(2)O(4)C(2) heterocyclic cores. Initial reactivity studies led to the isolation of a 1,3-diaza-2,4-distannacyclobutanediyl, [(Mes(2)C(6)H(3)CO(2))Sn(mu-NSiMe(3))](2). This molecule possesses a Sn(2)N(2) heterocyclic core and it was crystallised as both the CH(2)Cl(2) and Et(2)O solvates. Although the tin atoms in this molecule have a formal oxidation state of 3+, preliminary computational studies on this molecule suggest that it is best described as a ground state singlet. Finally, the X-ray crystal structure of (CH(2)Cl)(Cl)Sn[N(SiMe(3))(2)](2), the product of oxidative addition of CH(2)Cl(2) to Sn[N(SiMe(3))(2)](2), is also presented herein.

One and two-dimensional solid-state NMR investigations of the three-dimensional structures of zeolite-organic sorbate complexes

Publisher Summary This chapter describes one- and two-dimensional solid-state NMR investigations of the three-dimensional structures of zeolite–organic sorbate complexes. High-resolution solid-state NMR has emerged in recent years as an important complementary technique to XRD in the investigation of zeolite structures, being particularly sensitive to short to medium-range geometries and orderings. For some years, we have worked to develop new approaches in the application of solid-state NMR techniques together with XRD studies to the investigation of zeolite structures with the aim of ultimately being able to determine the 3D structures of their complexes with sorbed organic molecules. The chapter outlines the development of these techniques and their current standing. In the chapter, the application of the CP technique with protons as the source nuclei is described as representative of this class of experiments. In order to localize the polarization source as much as possible, experiments are carried out with the two specifically deuterated p-xylenes.

Transition Metal Ions Promote the Bioavailability of Hydrophobic Therapeutics: Cu and Zn Interactions with RNA Polymerase I Inhibitor CX5461

Low aqueous solubility is a major barrier to the clinical application of otherwise promising drug candidates. We demonstrate that this issue can be resolved in medicinal molecules containing potential ligating groups, through the addition of labile transition-metal ions. Incubation of the chemotherapeutic CX5461 with Cu2+ or Zn2+ enables solubilization at neutral pH but does not affect intrinsic cytotoxicity. Spectroscopic and computational studies demonstrate that this arises from coordination to the pyrazine functionality of CX5461 and may involve bidentate coordination at physiological pH.