Andrey N. Tsyganov

A multi-proxy record of Holocene environmental change, peatland development and carbon accumulation from Staroselsky Moch peatland, Russia:

Despite their huge extent, the peatlands of Russia are an under-exploited source of data on palaeoenvironmental change. We investigated the Holocene history of Staroselsky Moch, an ombrotrophic peatland in the Tver Region of European Russia by analysis of testate amoebae, peat physical properties, plant macrofossils and pollen. The peatland developed through a classic hydroseral succession in the early Holocene with a sharp decline in mineral input to 6200 cal. BC followed by an abrupt transition from fen to bog vegetation around 5500 cal. BC. Through the Holocene, the peatland has accumulated carbon at a mean apparent rate of 21.5 g C m−2 yr−1 suggesting that carbon accumulation rates in peatlands of European Russia lie close to the global average, and contrasting with a short sequence of eddy-covariance data which implies a net loss of carbon. The testate amoeba record shows considerable variability which may be driven by climate, but changes are not well replicated in the macrofossil or pollen data. We tentatively infer (1) a phase of early Holocene warming commencing around 7200 cal. BC, (2) dry peatland surface conditions c. 3700–3900 cal. BC, (3) a shift to wetter conditions from c. 3900 cal. BC, and (4) drier conditions from c. 400 cal. BC onwards. More robust and precise hydroclimatic reconstructions for this region will require the development of a regional transfer function and the replication of results between cores and sites.

Testing the Effect of Refrigerated Storage on Testate Amoeba Samples

Samples for analysis of testate amoebae and other protists frequently need to be stored for many months before microscopy. This storage commonly involves refrigeration, but we know that testate amoebae can live and reproduce in these conditions. This raises the question: do communities change during storage and how might this effect the data produced? We analysed Sphagnum samples over a 16-week period to address this question. Our results show no evidence for detectable change. This is a reassuring result supporting much current practice although we suggest that frozen storage or the addition of a fixative may be worthwhile precautions where feasible.

Quantitative reconstruction of peatland hydrological regime with fossil testate amoebae communities

The effect of bog water table on the species structure of sphagnobiontic testate amoebae communities has been studied in peatland ecosystems of European Russia. On this basis, a transfer function (model) for quantitative paleoreconstructions has been developed. This involved the formation of a training dataset, construction of models, and testing their performance. As a result, the model constructed by weighted averaging regression has been adopted as optimal.

Additive partitioning of testate amoeba species diversity across habitat hierarchy within the pristine southern taiga landscape (Pechora-Ilych Biosphere Reserve, Russia)

In order to better understand the distribution patterns of terrestrial eukaryotic microbes and the factors governing them, we studied the diversity partitioning of soil testate amoebae across levels of spatially nested habitat hierarchy in the largest European old-growth dark coniferous forest (Pechora-Ilych Biosphere Reserve; Komi Republic, Russia). The variation in testate amoeba species richness and assemblage structure was analysed in 87 samples from six biotopes in six vegetation types using an additive partitioning procedure and principal component analyses. The 80 taxa recorded represent the highest value of species richness for soil testate amoebae reported for taiga soils so far. Our results indicate that testate amoeba assemblages were highly aggregated at all levels and were mostly controlled by environmental factors rather than dispersal processes. The variation in species diversity of testate amoebae increased from the lowest to the highest hierarchical level. We conclude that, similarly to macroscopic organisms, testate amoeba species richness and community structure are primarily controlled by environmental conditions within the landscape and suggest that metacommunity dynamics of free-living microorganisms are driven by species sorting and/or mass effect processes.

Vegetation dynamics and fire history at the southern boundary of the forest vegetation zone in European Russia during the middle and late Holocene

Climate and human activity affected significantly the Eurasian on the forest vegetation zone through the Holocene. This paper presents new multi-proxy records of environmental changes at the southern boundary of the mixed coniferous broadleaved forest zone in the east-central part of the East European Plain during the middle and late Holocene. Palaeoecological analyses of a peat core for pollen, charcoal, peat humification, plant macrofossils and testate amoebae with dating using radiocarbon have shown that climate appears to have been a dominant control on vegetation. There is strong evidence for a reduced precipitation–evapotranspiration ratio and high fire frequency during the Holocene thermal maximum (6.9–5.3 ka BP), leading to dominance of Betula–Pinus forests. By contrast subsequent climatic cooling led to the expansion of broadleaved forests and establishment of Picea. Human activities influenced vegetation from the Neolithic onwards but played a role which was secondary to climate until the recent past. Over the last century, human impacts considerably increased because of harvesting of broadleaved trees and contributed to the formation of the current mixed coniferous broadleaved forests.

Ecological and environmental transition across the forested-to-open bog ecotone in a west Siberian peatland

Climate change may cause increasing tree cover in boreal peatlands, and the impacts of this encroachment will be noted first at forested-to-open bog ecotones. We investigate key metrics of ecosystem function in five such ecotones at a peatland complex in Western Siberia. Stratigraphic analysis of three cores from one of these transects shows that the ecotone has been dynamic over time with evidence for recent expansion of forested peatland. We observed that the two alternative states for northern boreal peatlands (forested/open) clearly support distinct plant and microbial communities. These in turn drive and respond to a number of feedback mechanisms. This has led to steep ecological gradients across the ecotones. Tree cover was associated with lower water tables and pH, along with higher bulk density, aquatic carbon concentrations, and electrical conductivity. We propose that the conditions found in the forested peatland of Western Siberia make the carbon sink more vulnerable to warmer and drier conditions.

Testate amoeba transfer function performance along localised hydrological gradients

Testate amoeba transfer functions are widely used for reconstruction of palaeo-hydrological regime in peatlands. However, the limitations of this approach have become apparent with increasing attention to validation and assessing sources of uncertainty. This paper investigates effects of peatland type and sampling depth on the performance of a transfer function using an independent test-set from four Sphagnum-dominated sites in European Russia (Penza Region). We focus on transfer function performance along localised hydrological gradients, which is a useful analogue for predictive ability through time. The performance of the transfer function with the independent test-set was generally weaker than for the leave-one-out or bootstrap cross-validations. However, the transfer function was robust for the reconstruction of relative changes in water-table depth, provided the presence of good modern analogues and overlap in water-table depth ranges. When applied to subsurface samples, the performance of the transfer function was reduced due to selective decomposition, the presence of deep-dwelling taxa or vertical transfer of shells. Our results stress the importance of thorough testing of transfer functions, and highlight the role of taphonomic processes in determining results. Further studies of stratification, taxonomy and taphonomy of testate amoebae will be needed to improve the robustness of transfer function output.

Holocene Dynamics of Vegetation and Ecological Conditions in the Center of the East European Plain

Changes in the vegetation and fire regimes in the central East European Plain during the second half of the Holocene have been reconstructed based on the results of paleobotanical analysis and radiocarbon dating of material from a section of peat deposit in the Mordovia State Nature Reserve. It has been shown that birch–pine forests were widespread in the region between 7000 and 5000 yr BP, with the frequency of fires in that period being high (the fire return interval ranged from 10–20 to 100 years). Beginning from 5000 yr BP and to the early 20th century, broadleaf forests were dominant, with the fire return interval increasing to 300–500 years or longer.

First records of testate amoebae from the Novaya Zemlya archipelago (Russian Arctic)

Testate amoebae have proved a useful group of species to understand the biogeography of larger microorganisms. The Arctic has attracted particular interest in such studies but there are large geographic gaps in current knowledge. Here we present what we believe is the first ever study of testate amoebae from the Novaya Zemlya archipelago in Arctic Russia. We investigated testate amoebae from the northernmost island of Novaya Zemlya proper and two smaller islands to the south: Dolgii Island and Matveev Island. We found that testate amoebae were present and active even in the extreme physical environment of northern Novaya Zemlya. Further south in the tundra zone of Dolgii and Matveev islands, testate amoebae were notably abundant and diverse. There were distinct differences in assemblage between all three islands and particularly between Novaya Zemlya and the two more southerly islands. The assemblage of Novaya Zemlya was distinctive with a surprising abundance of larger taxa. Comparisons to previous data suggest that the testate amoeba assemblages of these islands may show more affinity to those further west in Greenland and Svalbard than those further east in Siberia. Results highlight the limited knowledge of the abundance and diversity of these functionally significant protists in large areas of the globe.

Morphology and phylogeny of the testate amoebae Euglypha bryophila Brown, 1911 and Euglypha cristata Leidy, 1874 (Rhizaria, Euglyphida)

The genus Euglypha contains the largest number of filose testate amoeba taxa which were mainly described based on the morphological characteristics of shells. Despite the increasing amount of molecular data, the phylogenetic relationships within the genus Euglypha remain unresolved. In this work we provide new data on SSU rRNA gene sequences, light and electron microscopy for the two euglyphid species Euglypha bryophilaBrown, 1911 and Euglypha cristataLeidy, 1874. Both species are characterised by the presence of a turf of spines on the aboral pole of the shells but differ in shell cross sections (elliptical and circular, respectively). A newly revealed feature of E. bryophila is a three-lobed thickening at the anterior margin and an elongated lobe at the posterior margin of apertural plates. The phylogenetic analysis shows that the species group together with the previously sequenced taxa of the genus Euglypha according to the shell cross-section. The subdivision of the genus based on the shell symmetry may reflect evolutionary trends to complication of the shell from radial to biradial symmetry. We also suggest that the shape of the anterior thickening of apertural plates and the lobe at the posterior margin can be used to distinguish Euglypha at the species level.