Andy Steven

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

DNA-derived measurements of biological composition have the potential to produce data covering all of life, and provide a tantalizing proposition for researchers and managers. We used metabarcoding to compare benthic eukaryote composition from five estuaries of varying condition. In contrast to traditional studies, we found biotic richness was greatest in the most disturbed estuary, with this being due to the large volume of extraneous material (i.e. run-off from aquaculture, agriculture and other catchment activities) being deposited in the system. In addition, we found strong correlations between composition and a number of environmental variables, including nutrients, pH and turbidity. A wide range of taxa responded to these environmental gradients, providing new insights into their sensitivities to natural and anthropogenic stressors. Metabarcoding has the capacity to bolster current monitoring techniques, enabling the decisions regarding ecological condition to be based on a more holistic view of biodiversity.

Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions

ABSTRACT Seagrass ecosystems are significant carbon sinks, and their resident microbial communities ultimately determine the quantity and quality of carbon sequestered. However, environmental perturbations have been predicted to affect microbial‐driven seagrass decomposition and subsequent carbon sequestration. Utilizing techniques including 16S‐rDNA sequencing, solid‐state NMR and microsensor profiling, we tested the hypothesis that elevated seawater temperatures and eutrophication enhance the microbial decomposition of seagrass leaf detritus and rhizome/root tissues. Nutrient additions had a negligible effect on seagrass decomposition, indicating an absence of nutrient limitation. Elevated temperatures caused a 19% higher biomass loss for aerobically decaying leaf detritus, coinciding with changes in bacterial community structure and enhanced lignocellulose degradation. Although, community shifts and lignocellulose degradation were also observed for rhizome/root decomposition, anaerobic decay was unaffected by temperature. These observations suggest that oxygen availability constrains the stimulatory effects of temperature increases on bacterial carbon remineralization, possibly through differential temperature effects on bacterial functional groups, including putative aerobic heterotrophs (e.g. Erythrobacteraceae, Hyphomicrobiaceae) and sulfate reducers (e.g. Desulfobacteraceae). Consequently, under elevated seawater temperatures, carbon accumulation rates may diminish due to higher remineralization rates at the sediment surface. Nonetheless, the anoxic conditions ubiquitous to seagrass sediments can provide a degree of carbon protection under warming seawater temperatures. &NA; Graphical Abstract Figure. While elevated seawater temperatures may diminish carbon accumulation at the sediment surface, the anoxic conditions in coastal sediments can provide carbon protection under warming temperatures, thus promoting carbon storage.

Carbon sequestration by Australian tidal marshes

Australia’s tidal marshes have suffered significant losses but their recently recognised importance in CO2 sequestration is creating opportunities for their protection and restoration. We compiled all available data on soil organic carbon (OC) storage in Australia’s tidal marshes (323 cores). OC stocks in the surface 1 m averaged 165.41 (SE 6.96) Mg OC ha−1 (range 14–963 Mg OC ha−1). The mean OC accumulation rate was 0.55 ± 0.02 Mg OC ha−1 yr−1. Geomorphology was the most important predictor of OC stocks, with fluvial sites having twice the stock of OC as seaward sites. Australia’s 1.4 million hectares of tidal marshes contain an estimated 212 million tonnes of OC in the surface 1 m, with a potential CO2-equivalent value of

Impact of mooring activities on carbon stocks in seagrass meadows

USD7.19 billion. Annual sequestration is 0.75 Tg OC yr−1, with a CO2-equivalent value of

The exposure of the Great Barrier Reef to ocean acidification.

USD28.02 million per annum. This study provides the most comprehensive estimates of tidal marsh blue carbon in Australia, and illustrates their importance in climate change mitigation and adaptation, acting as CO2 sinks and buffering the impacts of rising sea level. We outline potential further development of carbon offset schemes to restore the sequestration capacity and other ecosystem services provided by Australia tidal marshes.

Comparability of Slack Water and Lagrangian Flow Respirometry Methods for Community Metabolic Measurements

Boating activities are one of the causes that threaten seagrass meadows and the ecosystem services they provide. Mechanical destruction of seagrass habitats may also trigger the erosion of sedimentary organic carbon (Corg) stocks, which may contribute to increasing atmospheric CO2. This study presents the first estimates of loss of Corg stocks in seagrass meadows due to mooring activities in Rottnest Island, Western Australia. Sediment cores were sampled from seagrass meadows and from bare but previously vegetated sediments underneath moorings. The Corg stores have been compromised by the mooring deployment from 1930s onwards, which involved both the erosion of existing sedimentary Corg stores and the lack of further accumulation of Corg. On average, undisturbed meadows had accumulated ~6.4 Kg Corg m−2 in the upper 50 cm-thick deposits at a rate of 34 g Corg m−2 yr−1. The comparison of Corg stores between meadows and mooring scars allows us to estimate a loss of 4.8 kg Corg m−2 in the 50 cm-thick deposits accumulated over ca. 200 yr as a result of mooring deployments. These results provide key data for the implementation of Corg storage credit offset policies to avoid the conversion of seagrass ecosystems and contribute to their preservation.

Impact of an extreme flood event on optical and biogeochemical properties in a subtropical coastal periurban embayment (Eastern Australia)

The Great Barrier Reef (GBR) is founded on reef-building corals. Corals build their exoskeleton with aragonite, but ocean acidification is lowering the aragonite saturation state of seawater (Ωa). The downscaling of ocean acidification projections from global to GBR scales requires the set of regional drivers controlling Ωa to be resolved. Here we use a regional coupled circulation–biogeochemical model and observations to estimate the Ωa experienced by the 3,581 reefs of the GBR, and to apportion the contributions of the hydrological cycle, regional hydrodynamics and metabolism on Ωa variability. We find more detail, and a greater range (1.43), than previously compiled coarse maps of Ωa of the region (0.4), or in observations (1.0). Most of the variability in Ωa is due to processes upstream of the reef in question. As a result, future decline in Ωa is likely to be steeper on the GBR than currently projected by the IPCC assessment report.

An integrated risk-assessment framework for multiple threats to floodplain values in the Kakadu Region, Australia, under a changing climate

Coral reef calcification is predicted to decline as a result of ocean acidification and other anthropogenic stressors. The majority of studies predicting declines based on in situ relationships between environmental parameters and net community calcification rate have been location-specific, preventing accurate predictions for coral reefs globally. In this study, net community calcification and production were measured on a coral reef flat at One Tree Island, Great Barrier Reef, using Lagrangian flow respirometry and slack water methods. Net community calcification, daytime net photosynthesis and nighttime respiration were higher under the flow respirometry method, likely due to increased water flow relative to the slack water method. The two methods also varied in the degrees to which they were influenced by potential measurement uncertainties. The difference in the results from these two commonly used methods implies that some of the location-specific differences in coral reef community metabolism may be due to differences in measurement methods.

Carbonate chemistry, community metabolism, PAR, temperature and salinity of One Tree Island reef

Major floods impacted the city of Brisbane, eastern Australia, in January 2011, delivering large amounts of dissolved and particulate materials and nutrients into the adjacent coastal embayment, Moreton Bay. The resulting spatially resolved changes in biogeochemical and optical properties in Moreton Bay were examined 1, 2, 6, 19, and 49 weeks after the main freshwater discharge. One week postflood, total suspended matter (TSM) and chlorophyll a (TChla) concentrations varied over 1 order of magnitude throughout Moreton Bay, the particle scattering coefficient at 555 nm varied by a factor of 20, and the total absorption coefficient and colored dissolved organic matter (CDOM) absorption coefficient at 440 nm varied by a factor of 5. The largest changes in biogeochemical and optical properties observed during our study were from 1 to 2 weeks after the floods: near the Brisbane River mouth, TSM decreased by a factor of 3, CDOM by a factor of 2, while TChla increased by a factor of 3. Within a year, optical and biogeochemical properties recovered to levels similar to nonflood conditions. The strong changes in the characteristics of the particulate and dissolved material following the flood event and subsequent biological and photochemical processes led to a large spatial and temporal variability in the relative contribution of different constituents to the total absorption coefficient at 440 nm, the particle single scattering albedo, and the specific inherent optical properties. This work has significant implications for the accuracy of standard ocean color remote sensing algorithms in coastal waters during flood events.

The effects of salinity, turbidity and flow on fish biomass estimated acoustically in two tidal rivers

The internationally important river–floodplains of the Kakadu Region in northern Australia are at risk from invasive species and future sea-level rise–saltwater inundation (SLR–SWI), requiring assessments of multiple cumulative risks over different time frames. An integrated risk-assessment framework was developed to assess threats from feral animals and aquatic weeds at three SLR-scenario time frames (present-day, 2070 and 2100) to natural (magpie goose habitats), cultural (indigenous hunting–fishing sites) and economic (tourism revenue less invasive species control costs) values. Probability density functions (pdfs) were fitted to spatial data to characterise values and threats, and combined with Monte Carlo simulation and sensitivity analyses to account for uncertainties. All risks were integrated in a Bayesian belief network to undertake ‘what if’ management-scenario analyses, and incorporated known ecological interactions and uncertainties. Coastal landscapes and socio-ecological systems in the region will be very different by 2100 as a result of SLR; freshwater ecosystems will transform to marine-dominated ecosystems and cannot be managed back to analogue conditions. In this context, future invasive-species risks will decrease, reflecting substantial loss of freshwater habitats previously at risk and a reduction in the extent of invasive species, highlighting the importance of freshwater refugia for the survival of iconic species.