Anne-Carlijn Alderkamp
Stanford University
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Featured researches published by Anne-Carlijn Alderkamp.
Integrative and Comparative Biology | 2010
Kevin R. Arrigo; Matthew M. Mills; Lindsey R. Kropuenske; Gert L. van Dijken; Anne-Carlijn Alderkamp; Dale H. Robinson
The Ross Sea, Antarctica, supports two distinct populations of phytoplankton, one that grows well in sea ice and blooms in the shallow mixed layers of the Western marginal ice zone and the other that can be found in sea ice but thrives in the deeply mixed layers of the Ross Sea. Dominated by diatoms (e.g. Fragilariopsis cylindrus) and the prymnesiophyte Phaeocystis antarctica, respectively, the processes leading to the development of these different phytoplankton assemblages are not well known. The goal of this article was to gain a better understanding of the photophysiological characteristics that allow each taxon to dominate its specific habitat. Cultures of F. cylindrus and P. antarctica were each grown semi-continuously at four different constant irradiances (5, 25, 65, and 125 µmol quanta/m2/s). Fragilariopsis cylindrus produced far less photosynthetic pigment per cell than did P. antarctica but much more photoprotective pigment. Fragilariopsis cylindrus also exhibited substantially lower rates of photosynthesis and growth but also was far less susceptible to photoinhibition of cell growth. Excess photosynthetic capacity, a measure of the ability of phytoplankton to exploit variable light environments, was significantly higher in both strains of P. antarctica than in F. cylindrus. The combination of these characteristics suggests that F. cylindrus has a competitive advantage under conditions where mixed layers are shallow and light levels are relatively constant and high. In contrast, P. antarctica should dominate waters where mixed layers are deep and light levels are variable. These results are consistent with distributions of phytoplankton in the Ross Sea and suggest that light is the primary factor determining composition of phytoplankton communities.
Journal of Phycology | 2010
Lindsey R. Kropuenske; Matthew M. Mills; Gert L. van Dijken; Anne-Carlijn Alderkamp; Gry Mine Berg; Dale H. Robinson; Nicholas A. Welschmeyer; Kevin R. Arrigo
We investigated rates and mechanisms of photoacclimation in cultures of Phaeocystis antarctica G. Karst. and Fragilariopsis cylindrus (Grunow) Willi Krieg, phytoplankton taxa that each dominate distinct areas of the Ross Sea, Antarctica. Both P. antarctica and F. cylindrus acclimated to increases in irradiance by reducing the effective size of the pigment antenna (σPSII) via xanthophyll‐cycle activity and reductions in chl. While enhanced photoprotection facilitated increases in specific growth rate and eventually led to higher light‐saturated photosynthetic rates (Pcellm) in P. antarctica, increases in those variables were much smaller in F. cylindrus. In response to a lower irradiance, relaxation of xanthophyll‐cycle activity led to an increase in σPSII in both taxa, which occurred much more slowly in F. cylindrus. A surprising increase in specific growth rate over the first 36 h of acclimation in P. antarctica may have facilitated the significant reductions in Pcellm observed in that taxon. In general, P. antarctica acclimated more quickly to changes in irradiance than F. cylindrus, exhibited a wider range in photosynthetic rates, but was more susceptible to photoinhibition. This acclimation strategy is consistent with growth in deeply mixed water columns with variations in irradiance that allow time for repair. In contrast, the slower acclimation rates, extensive photoprotection, and low photoinhibition exhibited by F. cylindrus suggest that it does not require the same period for repair as P. antarctica and is best suited for growth in habitats with relatively uniform irradiance, such as shallow mixed layers or sea ice.
Journal of Phycology | 2010
Matthew M. Mills; Lindsey R. Kropuenske; Gert L. van Dijken; Anne-Carlijn Alderkamp; Gry Mine Berg; Dale H. Robinson; Nicholas A. Welschmeyer; Kevin R. Arrigo
In the Ross Sea, the prymnesiophyte Phaeocystis antarctica G. Karst. dominates deeply mixed water columns, while diatoms dominate shallower mixed layers. Understanding what controls the dynamics of these two phytoplankton taxa is essential because they dominate virtually all coastal polar waters, have different nutrient utilization characteristics, and support dissimilar food webs. We cultured two strains of P. antarctica and one strain of the diatom Fragilariopsis cylindrus (Grunow) Willi Krieg under three dynamic irradiance regimes that simulated different mixed‐layer depths and measured their photosynthetic characteristics, cellular pigment concentrations, and cellular carbon and nitrogen content. In both species, chl a–normalized maximum carbon uptake rate (Pm* ) and specific growth rate were highest in the deeply mixed treatment that had a dark period. In all irradiance treatments, both (Pm* ) and photosynthetic efficiency (α*) were greater for the two P. antarctica strains than for the F. cylindrus strain. In contrast, P. antarctica strains were more susceptible to photoinhibition (β*) than the F. cylindrus strain. When photosynthetic rates of each phytoplankton taxon were normalized by cellular particulate organic carbon (POC), the difference in the maximal photosynthetic rate () was generally reduced. In the dynamic irradiance treatment that simulated the shallowest mixed‐layer irradiance, all three phytoplankton had similar ; however, the diatom had a 2‐fold higher POC‐normalized photosynthetic efficiency (αC). Finally, we performed calculations using the measured POC‐normalized photosynthetic parameters to show that αC and can play a greater role than βC in determining the competitive outcome between P. antarctica and F. cylindrus in both shallow and deep mixed‐layer environments of the Ross Sea.
Journal of Phycology | 2012
Anne-Carlijn Alderkamp; Gemma Kulk; Anita Buma; Ronald J. W. Visser; Gert L. van Dijken; Matthew M. Mills; Kevin R. Arrigo
The effects of iron limitation on photoacclimation to dynamic irradiance were studied in Phaeocystis antarctica G. Karst. and Fragilariopsis cylindrus (Grunow) W. Krieg. in terms of growth rate, photosynthetic parameters, pigment composition, and fluorescence characteristics. Under dynamic light conditions mimicking vertical mixing below the euphotic zone, P. antarctica displayed higher growth rates than F. cylindrus both under iron (Fe)–replete and Fe‐limiting conditions. Both species showed xanthophyll de‐epoxidation that was accompanied by low levels of nonphotochemical quenching (NPQ) during the irradiance maximum of the light cycle. The potential for NPQ at light levels corresponding to full sunlight was substantial in both species and increased under Fe limitation in F. cylindrus. Although the decline in Fv/Fm under Fe limitation was similar in both species, the accompanying decrease in the maximum rate of photosynthesis and growth rate was much stronger in F. cylindrus. Analysis of the electron transport rates through PSII and on to carbon (C) fixation revealed a large potential for photoprotective cyclic electron transport (CET) in F. cylindrus, particularly under Fe limitation. Probably, CET aided the photoprotection in F. cylindrus, but it also reduced photosynthetic efficiency at higher light intensities. P. antarctica, on the other hand, was able to efficiently use electrons flowing through PSII for C fixation at all light levels, particularly under Fe limitation. Thus, Fe limitation enhanced the photophysiological differences between P. antarctica and diatoms, supporting field observations where P. antarctica is found to dominate deeply mixed water columns, whereas diatoms dominate shallower mixed layers.
Molecular Phylogenetics and Evolution | 2014
David Roy Smith; Kevin R. Arrigo; Anne-Carlijn Alderkamp; Andrew E. Allen
We are just beginning to understand how mutation rates differ among mitochondrial, plastid, and nuclear genomes. In most seed plants the mitochondrial mutation rate is estimated to be lower than those of the plastid and nucleus, whereas in the red alga Porphyra the opposite is true, and in certain green algae all three genomes appear to have similar rates of mutation. Relative rate statistics of organelle vs nuclear genes, however, are lacking for lineages that acquired their plastids through secondary endosymbiosis, but recent organelle DNA analyses suggest that they may differ drastically from what is observed in lineages with primary plastids, such as green plants and red algae. Here, by measuring synonymous nucleotide substitutions, we approximate the relative mutation rates within the haptophyte genus Phaeocystis, which has a red-algal-derived, secondary plastid. Synonymous-site divergence data indicate that for Phaeocystis antarctica and P. globosa the mitochondrial mutation rate is 10 and 3 times that of the plastid and nucleus, respectively. This differs drastically from relative rate estimates for primary-plastid-bearing lineages and presents a much more dynamic view of organelle vs nuclear mutation rates across the eukaryotic domain.
Journal of Geophysical Research | 2017
Kevin R. Arrigo; Gert L. van Dijken; Anne-Carlijn Alderkamp; Zachary K. Erickson; Kate M. Lewis; Kate E. Lowry; Hannah L. Joy-Warren; Rob Middag; Janice E. Nash-Arrigo; Virginia Selz; Willem H. van de Poll
The Palmer Long-Term Ecological Research program has sampled waters of the western Antarctic Peninsula (wAP) annually each summer since 1990. However, information about the wAP prior to the peak of the phytoplankton bloom in January is sparse. Here we present results from a spring process cruise that sampled the wAP in the early stages of phytoplankton bloom development in 2014. Sea ice concentrations were high on the shelf relative to nonshelf waters, especially toward the south. Macronutrients were high and nonlimiting to phytoplankton growth in both shelf and nonshelf waters, while dissolved iron concentrations were high only on the shelf. Phytoplankton were in good physiological condition throughout the wAP, although biomass on the shelf was uniformly low, presumably because of heavy sea ice cover. In contrast, an early stage phytoplankton bloom was observed beneath variable sea ice cover just seaward of the shelf break. Chlorophyll a concentrations in the bloom reached 2 mg m^(−3) within a 100–150 km band between the SBACC and SACCF. The location of the bloom appeared to be controlled by a balance between enhanced vertical mixing at the position of the two fronts and increased stratification due to melting sea ice between them. Unlike summer, when diatoms overwhelmingly dominate the phytoplankton population of the wAP, the haptophyte Phaeocystis antarctica dominated in spring, although diatoms were common. These results suggest that factors controlling phytoplankton abundance and composition change seasonally and may differentially affect phytoplankton populations as environmental conditions within the wAP region continue to change.
Deep-sea Research Part Ii-topical Studies in Oceanography | 2012
Loes J. A. Gerringa; Anne-Carlijn Alderkamp; Patrick Laan; Charles-Edouard Thuróczy; Hein J. W. de Baar; Matthew M. Mills; Gert L. van Dijken; Hans van Haren; Kevin R. Arrigo
FEMS Microbiology Ecology | 2007
Anne-Carlijn Alderkamp; Marion van Rijssel; Henk Bolhuis
Deep-sea Research Part Ii-topical Studies in Oceanography | 2012
Anne-Carlijn Alderkamp; Matthew M. Mills; Gert L. van Dijken; Patrick Laan; Charles-Edouard Thuróczy; Loes J. A. Gerringa; Hein J. W. de Baar; Christopher D. Payne; Ronald J. W. Visser; Anita Buma; Kevin R. Arrigo
Earth and Planetary Science Letters | 2011
Wafa Abouchami; Stephen J. G. Galer; de Henricus Baar; Anne-Carlijn Alderkamp; R. Middag; Patrick Laan; H. Feldmann; Meinrat O. Andreae