Arun Kumar De
National Dairy Research Institute
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Featured researches published by Arun Kumar De.
Theriogenology | 2011
Mangottil A. Pradeep; J. Jagadeesh; Arun Kumar De; Jai K. Kaushik; Dhruba Malakar; Sudarshan Kumar; A. K. Dang; S.K. Das; Ashok Kumar Mohanty
Oviduct-specific glycoprotein (oviductin) plays an important role during fertilization and early embryonic development. The oviductin cDNA was successfully cloned and sequenced in goat, which possessed an open reading frame of 1620 nucleotides representing 539 amino acids. Predicted amino acid sequence showed very high identity with sheep (97%) followed by cow (94%), porcine (77%), hamster (69%), human (66%), rabbit (65%), mouse (64%) and baboon (62%). The bioinformatics analysis of the sequences revealed the presence of a signal sequence of 21 amino acids, one potential N-linked glycosylation site at position 402, 21 potential O-linked glycosylation sites and 36 potential phosphorylation sites. The native oviductin was purified from the oviductal tissue, which showed three distinct bands on SDS-PAGE and western blot (MW ~60-95 kDa). The predicted molecular weight of goat oviductin was 57.5 kDa, calculated from the amino acid sequences. The observed higher molecular weight has been attributed to the presence of large number of potential O-linked glycosylation sites. The lower concentration (10 μg/mL) of oviductin increased the cleavage rate, morula and blastocyst yield significantly (P < 0.05) as compared to higher concentration (100 μg/mL). Goat oviductin retarded the activity of pronase (0.1%) on zona solubility of oocytes significantly (P < 0.01).
Animal Biotechnology | 2011
Arun Kumar De; Dhruba Malakar; Yogesh S. Akshey; Manoj Kumar Jena; R. Dutta
The aim of the present study was to isolate and characterize goat embryonic stem cell-like cells from in vitro produced goat embryos. Inner cell mass (ICM) cells were isolated either mechanically or by enzymatic digestion from 150 blastocysts and 35 hatched blastocysts whereas 100 morulae were used for blastomeres isolation mechanically. The ICM derived cells or blastomeres were cultured on a feeder layer. The primary colony formation was significantly higher (P < 0.01) for hatched blastocysts (77.14%) than early/expanded blastocysts (54%) or morula (14%). When ICMs were isolated mechanically the primary colony formation for hatched blastocysts (90%) as well as blastocysts (66%) were significantly more than when ICMs were isolated by enzymatic digestion (60% and 30%, respectively). The colonies were disaggregated either mechanically or by enzymatic digestion for further subculture. When mechanical method was followed, the colonies remained undifferentiated up to 15 passages and three ES cell-like cell lines were produced (gES-1, gES-2, and gES-3). However, enzymatic disaggregation resulted in differentiation. The undifferentiated cells showed stem cell like morphological features, normal karyotype, and expressed stem cell specific surface markers like alkaline phosphatase, TRA-1-61, TRA-1-81, and intracellular markers Oct4, Sox2, and Nanog. Following prolonged culture of the ES cell-like cells were differentiated into several types of cells including neuron like and epithelium-like cells. In conclusion, goat embryonic stem cell-like cells can be isolated from in vitro produced goat embryos and can be maintained for long periods in culture.
Reproduction in Domestic Animals | 2011
Yogesh S. Akshey; Dhruba Malakar; Arun Kumar De; Manoj Kumar Jena; S. Sahu; R. Dutta
The present investigation was carried out to find an efficient chemically assisted procedure for enucleation of goat oocytes related to handmade cloning (HMC) technique. After 22-h in vitro maturation, oocytes were incubated with 0.5 μg/ml demecolcine for 2 h. Cumulus cells were removed by pipetting and vortexing in 0.5 mg/ml hyaluronidase, and zona pellucida were digested with pronase. Oocytes with extrusion cones were subjected to oriented bisection. One-third of the cytoplasm with the extrusion cone was removed with a micro blade. The remaining cytoplasts were used as recipients in HMC. Goat foetal fibroblasts were used as nuclear donors. The overall efficiency measured as the number of cytoplasts obtained per total number of oocytes used was significantly (p < 0.05) higher in chemically assisted handmade enucleation (CAHE) than oriented handmade enucleation without demecolcine (OHE) (80.02 ± 1.292% vs. 72.9 ± 1.00%, respectively, mean ± SEM). The reconstructed and activated embryos were cultured in embryo development medium (EDM) for 7 days. Fusion, cleavage and blastocyst development rate were 71.63 ± 1.95%, 92.94 ± 0.91% and 23.78 ± 3.33% (mean ± SEM), respectively which did not differ significantly from those achieved with random handmade enucleation and OHE. In conclusion, chemically assisted enucleation is a highly efficient and reliable enucleation method for goat HMC which eliminates the need of expensive equipment (inverted fluorescence microscope) and potentially harmful chromatin staining and ultraviolet (UV) irradiation for cytoplast selection.
Journal of Applied Animal Research | 2011
Arun Kumar De; Dhruba Malakar; R. Dutta; S. Sahu; Manoj Kumar Jena
Feeder layer and leukaemia inhibitory factor (LIF) play an important role in maintaining the embryonic stem cells in undifferentiated state and help in their unlimited proliferation. The aim of the present investigation was to see the effect of LIF and different types of feeder layers on growth and pluripotent nature of goat embryonic stem cells. Goat blastocysts were produced in vitro by standard methods of in vitro maturation (IVM), in vitro fertilisation (IVF) and in vitro culture (IVC) techniques. Inner cell mass (ICM) cells were isolated mechanically and cultured in embryonic stem (ES) cell medium on inactivated feeder layer supplemented with or without LIF. When ICM cells were cultured on goat fibroblast feeder layer in ES cell culture medium supplemented with LIF they maintained undifferentiated state up to 15 passages. The undifferentiated ES cells showed stem cell specific morphological features, normal karyotype and expressed stem cell specific surface markers like alkaline phosphatase,TRI-1-61, TRI-1-81 and intracellular markers Oct4, Sox2 and Nanog. It could be concluded that goat embryonic stem cells were successfully cultured on feeder layers which were not of goat origin but to maintain the undifferentiated state for long time was found the best on goat fetal fibroblast with LIF.
Small Ruminant Research | 2012
Manoj Kumar Jena; Dhruba Malakar; Arun Kumar De; S. Garg; Yogesh S. Akshey; R. Dutta; S. Sahu; Ashok Kumar Mohanty; Jai K. Kaushik
Livestock Science | 2012
Arun Kumar De; Dhruba Malakar; Manoj Kumar Jena; R. Dutta; S. Garg; Yogesh S. Akshey
Small Ruminant Research | 2011
Arun Kumar De; Dhruba Malakar; Yogesh S. Akshey; Manoj Kumar Jena; S. Garg; R. Dutta; S. Sahu
Reproduction, Fertility and Development | 2008
Yogesh S. Akshey; Dhruba Malakar; Arun Kumar De
Small Ruminant Research | 2013
Arun Kumar De; S. Garg; Dinesh Kumar Singhal; H. N. Malik; Ayan Mukherjee; Manoj Kumar Jena; Sudarshan Kumar; Jai K. Kaushik; Ashok Kumar Mohanty; Bikash Chandra Das; Sadhan Bag; Subrata Kumar Bhanja; Dhruba Malakar
Reproduction, Fertility and Development | 2011
S. Garg; Dhruba Malakar; R. Dutta; Manoj Kumar Jena; Arun Kumar De; D. Kumar; S. Sahu