Ashley M. Wright

Charge Transfer and Blue Shifting of Vibrational Frequencies in a Hydrogen Bond Acceptor

A comprehensive Raman spectroscopic/electronic structure study of hydrogen bonding by pyrimidine with eight different polar solvents is presented. Raman spectra of binary mixtures of pyrimidine with methanol and ethylene glycol are reported, and shifts in ν1, ν3, ν6a, ν6b, ν8a, ν8b, ν9a, ν15, ν16a, and ν16b are compared to earlier results obtained for water. Large shifts to higher vibrational energy, often referred to as blue shifts, are observed for ν1, ν6b, and ν8b (by as much as 14 cm(-1)). While gradual blue shifts with increasing hydrogen bond donor concentration are observed for ν6b and ν8b, ν1 exhibits three distinct spectral components whose relative intensities vary with concentration. The blue shift of ν1 is further examined in binary mixtures of pyrimidine with acetic acid, thioglycol, phenylmethanol, hexylamine, and acetonitrile. Electronic structure computations for more than 100 microsolvated structures reveal a significant dependence of the magnitude of the ν1 blue shift on the local microsolvation geometry. Results from natural bond orbital (NBO) calculations also reveal a strong correlation between charge transfer and blue shifting of pyrimidines normal modes. Although charge transfer has previously been linked to blue shifting of the X-H stretching frequency in hydrogen bond donors, here, a similar trend in a hydrogen bond acceptor is demonstrated.

Vibrational Spectroscopy of N -Methyliminodiacetic Acid (MIDA)-Protected Boronate Ester: Examination of the B–N Dative Bond

N-methyliminodiacetic acid (MIDA)-protected boronate esters are a new class of reagents that offer great promise in iterative Suzuki-Miyaura cross-coupling reactions. Compared to earlier reagents, MIDA esters are easily handled and are benchtop stable under air indefinitely. The success of this new species is tied to its unique molecular architecture. Compared to the simpler B-N containing molecules ammonia borane and trimethylamine borane, MIDA esters are much larger, and the sp(3) hybridized boron atom is secured by two five membered rings, making this molecular class stable for spectroscopic study. Here, we present infrared, Raman, and surface enhanced Raman (SERS) spectra of methylboronic acid MIDA ester. Comparisons of the spectroscopic results to those from electronic structure calculations suggest that the B-N stretching mode in this molecule lies in the range 560-650 cm(-1), making it among the lowest energy vibrations observed to date that can be primarily attributed to B-N stretching.

Understanding the Role of Hyponitrite in Nitric Oxide Reduction

Herein, we review the preparation and coordination chemistry of cis and trans isomers of hyponitrite, [N2O2](2-). Hyponitrite is known to bind to metals via a variety of bonding modes. In fact, at least eight different bonding modes have been observed, which is remarkable for such a simple ligand. More importantly, it is apparent that the cis isomer of hyponitrite is more reactive than the trans isomer because the barrier of N2O elimination from cis-hyponitrite is lower than that of trans-hyponitrite. This observation may have important mechanistic implications for both heterogeneous NOx reduction catalysts and NO reductase. However, our understanding of the hyponitrite ligand has been limited by the lack of a general route to this fragment, and most instances of its formation have been serendipitous.

Oxidation of alcohols and activated alkanes with lewis acid-activated tempo

The reactivity of MCl3(η(1)-TEMPO) (M = Fe, 1; Al, 2; TEMPO = 2,2,6,6-tetramethylpiperidine-N-oxyl) with a variety of alcohols, including 3,4-dimethoxybenzyl alcohol, 1-phenyl-2-phenoxyethanol, and 1,2-diphenyl-2-methoxyethanol, was investigated using NMR spectroscopy and mass spectrometry. Complex 1 was effective in cleanly converting these substrates to the corresponding aldehyde or ketone. Complex 2 was also able to oxidize these substrates; however, in a few instances the products of overoxidation were also observed. Oxidation of activated alkanes, such as xanthene, by 1 or 2 suggests that the reactions proceed via an initial 1-electron concerted proton-electron transfer (CPET) event. Finally, reaction of TEMPO with FeBr3 in Et2O results in the formation of a mixture of FeBr3(η(1)-TEMPOH) (23) and [FeBr2(η(1)-TEMPOH)]2(μ-O) (24), via oxidation of the solvent, Et2O.

Mechanistic Insights into the Formation of N2O by a Nickel Nitrosyl Complex

Reaction of [Ni(NO)(bipy)(Me2phen)][PF6] with 1 equiv of nitric oxide (NO) in CH2Cl2 results in the formation of N2O and [{(Me2phen)Ni(NO)}2(μ-η(1)-N:η(1)-O)-NO2)][PF6] (3), along with the known complex, [Ni(bipy)3][PF6]2 (4). The isolation of complex 3, which contains a nitrite ligand, demonstrates that the reaction of [Ni(NO)(bipy)(Me2phen)][PF6] with exogenous NO results in NO disproportionation and not NO reduction. Complex 3 could also be accessed by reaction of [Ni(NO)(Me2phen)][PF6] (5) with (Me2phen)Ni(NO)(NO2) (7) in good yield. Complexes 3, 5, and 7 were fully characterized, including analysis by X-ray crystallography in the case of 3 and 7. Furthermore, addition of 0.5 equiv of bipy to [Ni(NO)(bipy)][PF6] results in formation of the hyponitrite complex, [{(bipy)Ni(κ(2)-O2N2)}η(1):η(1)-N,N-{Ni(NO)(bipy)}2][PF6]2 (9), in modest yield. Importantly, the hyponitrite ligand in 9 is thought to form via coupling of two NO(-) ligands and not by coupling of a nucleophilic nitrosyl ligand (NO(-)) with an electrophilic nitrosyl ligand (NO(+)). X-ray crystallography reveals that complex 9 features a new binding mode of the cis-hyponitrite ligand.

Competition between Hydrophilic and Argyrophilic Interactions in Surface Enhanced Raman Spectroscopy.

The competition for binding and charge-transfer (CT) from the nitrogen containing heterocycle pyrimidine to either silver or to water in surface enhanced Raman spectroscopy (SERS) is discussed. The correlation between the shifting observed for vibrational normal modes and CT is analyzed both experimentally using Raman spectroscopy and theoretically using electronic structure theory. Discrete features in the Raman spectrum correspond to the binding of either water or silver to each of pyrimidines nitrogen atoms with comparable frequency shifts. Natural bond orbital (NBO) calculations in each chemical environment reveal that the magnitude of charge transfer from pyrimidine to adjacent silver atoms is only about twice that for water alone. These results suggest that the choice of solvent plays a role in determining the vibrational frequencies of nitrogen containing molecules in SERS experiments.

Probing Dative and Dihydrogen Bonding in Ammonia Borane with Electronic Structure Computations and Raman under Nitrogen Spectroscopy

Although ammonia borane is isoelectronic with ethane and they have similar structures, BH3NH3 exhibits rather atypical bonding compared to that in CH3CH3. The central bond in ammonia borane is actually a coordinate covalent or dative bond rather than the conventional covalent C-C bond in ethane where each atom donates one electron. In addition, strong intermolecular dihydrogen bonds can form between two or more ammonia borane molecules compared to the relatively weak dispersion forces between ethane molecules. As a result, ammonia boranes physical properties are very sensitive to the environment. For example, gas-phase and solid-state ammonia borane have very different BN bond lengths and BN stretching frequencies, which led to much debate in the literature. It has been demonstrated that the use of cluster models based on experimental crystal structures led to better agreement between theory and experiment. Here, we employ a variety of cluster models to track how the interaction energies, bond lengths, and vibrational normal modes evolve with the size and structural characteristics of the clusters. The M06-2X/6-311++G(2df,2pd) level of theory was selected for this analysis on the basis of favorable comparison with CCSD(T)/aug-cc-pVTZ data for the ammonia borane monomer and dimer. Fourteen unique fully optimized molecular cluster geometries, (BH3NH3)n≤12, and nine crystal models, (BH3NH3)n≤19, were used to elucidate how the local environment impacts ammonia boranes physical properties. Computational results for the BN stretching frequencies are also compared directly to the Raman spectrum of solid ammonia borane at 77 K using Raman under liquid nitrogen spectroscopy (RUNS). A strong linear correlation was found to exist between the BN bond length and stretching frequency, from an isolated monomer to the most distorted BH3NH3 unit in a cluster or crystal structure model. Excellent agreement was seen between the frequencies computed for the largest crystal model and the RUNS experimental spectra (typically within a few wavenumbers).