Ashok Bankar

Environmental and industrial applications of Yarrowia lipolytica

Yarrowia lipolytica is a fungus that degrades hydrophobic substrates very efficiently. The fungus displays several important characteristics that have encouraged researchers to study various basic biological and biotechnological applications in detail. Although the organism has been used as model system for studying dimorphism, salt tolerance, heterologous protein expression, and lipid accumulation, there are no recent reviews on the environmental and industrial applications of this organism. Included here are applications in bioremediation of environments contaminated with aliphatic and aromatic compounds, organic pollutants, 2,4,6-trinitrotoluene, and metals. A variety of industrially important recent processes for the synthesis of β-hydroxy butyrate, l-dopa, and emulsifiers have also been reviewed. Production of unique inherent enzymes (inulinases, α-mannosidases), novel applications of esterases and lipases, and the use of the fungus for heterologous expression of biotechnologically relevant products have also been highlighted. The review while entailing a general overview focuses critically on some of the recent advances on the applications of this yeast. The examples cited here demonstrate the use of wild-type, mutant as well as genetically manipulated strains of Y. lipolytica for the development of different products, processes, and technologies. This also throws light on how a single organism can be versatile with respect to its metabolic abilities and how it can be exploited for a variety of purposes. This review will thus form a base for future developments in this field.

Removal of chromium (VI) ions from aqueous solution by adsorption onto two marine isolates of Yarrowia lipolytica.

The removal of chromium (VI) ions from aqueous solutions by the biomass of two marine strains of Yarrowia lipolytica (NCIM 3589 and 3590) was studied with respect to pH, temperature, biomass, sea salt concentration, agitation speed, contact time and initial concentration of chromium (VI) ions. Maximum biosorption was observed at pH 1.0 and at a temperature of 35 degrees C. Increase in biomass and sea salts resulted in a decreased metal uptake. With an agitation speed of 130 rpm, equilibrium was attained within 2h. Under optimum conditions, biosorption was enhanced with increasing concentrations of Cr (VI) ions. NCIM 3589 and 3590 displayed a specific uptake of Cr (VI) ions of 63.73+/-1.3 mg g(-1) at a concentration of 950 ppm and 46.09+/-0.23 mg g(-1) at 955 ppm, respectively. Scatchard plot analysis revealed a straight line allowing the data to be fitted in the Langmuir model. The adsorption data obtained also fitted well to the Freundlich isotherm. The surface sequestration of Cr (VI) by Y. lipolytica was investigated with a scanning electron microscope equipped with an energy dispersive spectrometer (SEM-EDS) as well as with ED-X-ray fluorescence (ED-XRF). Fourier transform infrared (FTIR) spectroscopy revealed the involvement of carboxyl, hydroxyl and amide groups on the cell surfaces in chromium binding.

3, 4-dihydroxy-L-phenylalanine-derived melanin from Yarrowia lipolytica mediates the synthesis of silver and gold nanostructures.

BackgroundNanobiotechnology applies the capabilities of biological systems in generating a variety of nano-sized structures. Plants, algae, fungi and bacteria are some systems mediating such reactions. In fungi, the synthesis of melanin is an important strategy for cell-survival under metal-stressed conditions. Yarrowia lipolytica, the biotechnologically significant yeast also produces melanin that sequesters heavy metal ions. The content of this cell-associated melanin is often low and precursors such as L-tyrosine or 3, 4-dihydroxy-L-phenylalanine (L-DOPA) can enhance its production. The induced melanin has not been exploited for the synthesis of nanostructures. In this investigation, we have employed L-DOPA-melanin for the facile synthesis of silver and gold nanostructures. The former have been used for the development of anti-fungal paints.MethodsYarrowia lipolytica NCIM 3590 cells were incubated with L-DOPA for 18 h and the resultant dark pigment was subjected to physical and chemical analysis. This biopolymer was used as a reducing and stabilizing agent for the synthesis of silver and gold nanostructures. These nanoparticles were characterized by UV-Visible spectra, X-ray diffraction (XRD) studies, and electron microscopy. Silver nanoparticles were evaluated for anti-fungal activity.ResultsThe pigment isolated from Y. lipolytica was identified as melanin. The induced pigment reduced silver nitrate and chloroauric acid to silver and gold nanostructures, respectively. The silver nanoparticles were smaller in size (7 nm) and displayed excellent anti-fungal properties towards an Aspergillus sp. isolated from a wall surface. An application of these nanoparticles as effective paint-additives has been demonstrated.ConclusionThe yeast mediated enhanced production of the metal-ion-reducing pigment, melanin. A simple and rapid method for the extracellular synthesis of nanoparticles with paint-additive-application was developed.

Removal of hexavalent chromium ions by Yarrowia lipolytica cells modified with phyto-inspired Fe0/Fe3O4 nanoparticles

The removal of hexavalent chromium [Cr (VI)], an important ground water pollutant by phyto-inspired Fe(0)/Fe(3)O(4) nanocomposite-modified cells of Yarrowia lipolytica (NCIM 3589 and NCIM 3590), was investigated. Electron microscopy and magnetometer studies indicated an effective modification of yeast cell surfaces by the nanocomposites. The effect of pH, temperature, agitation speed, contact time and initial metal ion concentration on the removal of Cr (VI) was determined. The specific uptake values at pH 2.0 were 186.32±3.17 and 137.31±4.53 mg g(-1) for NCIM 3589 and NCIM 3590, respectively, when 1000 mg L(-1) of metal ion concentrations were used. The equilibrium data fitted to Scatchard, Langmuir and linearized Freundlich models suggesting that adsorption played a role in the removal of Cr (VI) ions. The surface modified yeast cells displayed higher values of Langmuir and Scatchard coefficients than the unmodified cells indicating that the former were more efficient in Cr (VI) removal. The enhanced detoxification of Cr (VI) ions by this composite material could be attributed to the reductive power of the Fe(0)/Fe(3)O(4) nanocomposites as well the yeast cell surface functional groups.

Psychrotrophic yeast Yarrowia lipolytica NCYC 789 mediates the synthesis of antimicrobial silver nanoparticles via cell-associated melanin

A psychrotrophic marine strain of the ascomycetous yeast Yarrowia lipolytica (NCYC 789) synthesized silver nanoparticles (AgNPs) in a cell-associated manner. These nanostructures were characterized by UV-Visible spectroscopy and scanning electron microscope-energy dispersive spectrometer (SEM-EDS) analysis. The brown pigment (melanin) involved in metal-interactions was obtained from the cells. This extracted pigment also mediated the synthesis of silver nanoparticles that were characterized by a variety of analytical techniques. The melanin-derived nanoparticles displayed antibiofilm activity. This paper thus reports the synthesis of AgNPs by the biotechnologically important yeast Y. lipolytica; proposes a possible mechanism involved in the synthetic process and describes the use of the bio-inspired nanoparticles as antibiofilm agents.

Phyto-inspired silica nanowires: characterization and application in lipase immobilization.

Silica nanostructures were phyto-fabricated on different surfaces by using pomegranate (Punica granatum) leaf extracts. On zinc films, nanowires were obtained. On other surfaces such as silica, alumina, zinc oxide, and glass, spherical aggregates, cubic assemblies, microflakes, and acicular structures, respectively, were observed. The nanowires developed on Zn surfaces were characterized by scanning electron microscope-energy dispersive spectrometer (SEM-EDS), X-ray diffraction (XRD), photoluminescence, and Fourier transform infrared (FTIR) spectroscopic analysis. XRD profiles displayed peaks at 2.4, 4.9, and 12.1° indicating the presence of silica nanostructures. When excited at 340 nm, the reaction mixtures displayed a characteristic blue luminescence at 404 nm. FTIR spectra showed the existence of Si-OH and Si-O-Si bonds. The nanowires were functionalized with amine groups and used for the covalent immobilization of Candida rugosa lipase. The immobilized enzyme displayed better pH and temperature stability and retained 80% activity after 20 cycles. This paper highlights a novel route for the phyto-mediated growth of silica nanowires on Zn surfaces, their characterization and effective use as a matrix for enzyme immobilization.

Management of Heavy Metal Pollution by Using Yeast Biomass

In recent years, the management of heavy metal pollution has become a major issue. Toxic heavy metals pose a serious threat to the environment and living forms. A number of conventional methods have been developed for the recovery of toxic heavy metals. On account of some disadvantages associated with these methods, biosorption onto microbial biomass has become an attractive alternative. Among microorganisms, yeasts have received considerable attention on account of yeast biomass being easily obtainable from inexpensive media. This is also abundantly generated as a by-product from the fermentation industry. Based on the published literature, the principles, methodologies and techniques involved in the management of heavy metals by yeast systems are summarized in this chapter. Adsorption capacities of different yeasts for a variety of heavy metals have been compared. Dependence of yeast biomass metal-binding capacities on parameters such as pH, temperature, contact time, competitive metal ions, agitation, initial metal ions and biomass concentrations have been explained. Isotherms, equilibrium models and kinetics have also been extensively discussed. Mechanisms involved in the biosorption by yeasts and the future prospects of this biotechnologically relevant topic have been highlighted.

Isolation and characterization of a rare waterborne lytic phage of Salmonella enterica serovar Paratyphi B

A lytic phage of Salmonella serovar Paratyphi B, named φSPB, was isolated from surface waters of the Pavana River in India. Phage φSPB is a member of the Podoviridae family and is morphologically similar to the 7-11 phages of the C3 morphotype of tailed phages, characterized by a very long, cigar-shaped head. The head measured approximately 153 × 57 nm, and the tail size was 12 × 7 nm. The phage was stable over a wide range of pH (4-9) and temperature (4-40 °C). The adsorption rate constant was 4.7 × 10(-10). Latent and eclipse periods were 10 and 15 min, respectively, and the burst size was 100 plaque-forming units/infected cell after 25 min at 37 °C. The phage DNA was 59 kb in size. Ten major proteins were observed on SDS-PAGE, although some of these proteins could be bacterial contaminants. This is the first report of Salmonella enterica subsp. enterica serovar Paratyphi B phage of C3 morphotype from India that has many unique features, such as high replication potential, short replication time, and stability over a wide range of pH and temperature, making it a promising biocontrol agent against the drug-resistant strains of Salmonella Paratyphi B.

Recent Trends in Biosorption of Heavy Metals by Actinobacteria

Abstract Recently, biosorption processes have received considerable attention for the removal of heavy metals from the aqueous environment. Thus, the selection of biomass for biosorption is a major challenge for developing cheaper and more effective technology. Actinobacteria are directly involved in plant growth promotion, by stimulating hormones and improving nutrient acquisition in plants. Also, Actinobacteria are reported to alleviate biotic/abiotic stress in plants. The biomass of Actinobacteria has been considered as efficient, eco-friendly, and cost-effective potential candidate for biosorption of heavy metals as they have the potency to produce secondary metabolites and enzymes, the main factors essential for environmental stress tolerance. They are reported to possess metal detoxification capabilities such as soil acidification and production of metal mobilizing/immobilizing substances, and are hence considered as a bio-tool for phytoremediation. The principles and methodologies used in management of heavy metals by using the Actinobacteria system are summarized in this book chapter. Adsorption capacities, mechanisms, isotherms, equilibrium models, and kinetics are described in this chapter.

Heavy metal tolerance in marine strains of Yarrowia lipolytica

Heavy metal tolerance of two marine strains of Yarrowia lipolytica was tested on solid yeast extract peptone dextrose agar plates. Based on minimum inhibitory concentration esteems, it is inferred that the two strains of Y. lipolytica were tolerant to heavy metals such as Pb(II), Cr(III), Zn(II), Cu(II), As(V), and Ni(II) ions. The impact of various heavy metal concentrations on the growth kinetics of Y. lipolytica was likewise assessed. With increased heavy metal concentration, the specific growth rate was reduced with delayed doubling time. Furthermore, biofilm development of both yeasts on the glass surfaces and in microtitre plates was assessed in presence of different heavy metals. In microtitre plates, a short lag phase of biofilm formation was noticed without the addition of heavy metals in yeast nitrogen base liquid media. A lag phase was extended over increasing metal concentrations of media. Heavy metals like Cr(VI), Cd(II), and As(V) are contrastingly influenced on biofilms’ formation of microtitre plates. Other heavy metals did not much influence on biofilms development. Thus, biofilm formation is a strategy of Y. lipolytica under stress of heavy metals has significance in bioremediation process for recovery of heavy metals from contaminated environment.