Aviv Dombrovsky

Light- induced electron transfer and ATP synthesis in a carotene synthesizing insect

A singular adaptive phenotype of a parthenogenetic insect species (Acyrthosiphon pisum) was selected in cold conditions and is characterized by a remarkable apparition of a greenish colour. The aphid pigments involve carotenoid genes well defined in chloroplasts and cyanobacteria and amazingly present in the aphid genome, likely by lateral transfer during evolution. The abundant carotenoid synthesis in aphids suggests strongly that a major and unknown physiological role is related to these compounds beyond their canonical anti-oxidant properties. We report here that the capture of light energy in living aphids results in the photo induced electron transfer from excited chromophores to acceptor molecules. The redox potentials of molecules involved in this process would be compatible with the reduction of the NAD+ coenzyme. This appears as an archaic photosynthetic system consisting of photo-emitted electrons that are in fine funnelled into the mitochondrial reducing power in order to synthesize ATP molecules.

Genome Assembly of Bell Pepper Endornavirus from Small RNA

ABSTRACT The family Endornaviridae infects diverse hosts, including plants, fungi, and oomycetes. Here we report for the first time the assembly of bell pepper endornavirus by next-generation sequencing of viral small RNA. Such a population of small RNA indicates the activation of the viral immunity silencing machinery by this cryptic virus, which probably encodes a novel silencing suppressor.

Profiling the repertoire of phenotypes influenced by environmental cues that occur during asexual reproduction

The aphid Acyrthosiphon pisum population is composed of different morphs, such as winged and wingless parthenogens, males, and sexual females. The combined effect of reduced photoperiodicity and cold in fall triggers the apparition of sexual morphs. In contrast they reproduce asexually in spring and summer. In our current study, we provide evidence that clonal individuals display phenotypic variability within asexual morph categories. We describe that clones sharing the same morphological features, which arose from the same founder mother, constitute a repertoire of variants with distinct behavioral and physiological traits. Our results suggest that the prevailing environmental conditions influence the recruitment of adaptive phenotypes from a cohort of clonal individuals exhibiting considerable molecular diversity. However, we observed that the variability might be reduced or enhanced by external factors, but is never abolished in accordance with a model of stochastically produced phenotypes. This overall mechanism allows the renewal of colonies from a few adapted individuals that survive drastic episodic changes in a fluctuating environment.

Eggplant mild leaf mottle virus (EMLMV), a new putative member of the genus Ipomovirus that harbors an HC-Pro gene.

Since 2003, a new viral disease of eggplant (Solanum melongena L.) has been spreading in fields in the Jordan and Arava Valleys, Israel. The symptoms of this disease include mild leaf mottling and varying degrees of fruit distortion. This disease can be transmitted by mechanical sap inoculation, as well as by the whitefly Bemisia tabaci (Homoptera, Aleyrodidae) and has been tentatively named eggplant mild leaf mottle virus (EMLMV). Our study aimed to determine the complete sequence and genome organization of EMLMV. The extracted viral RNA was subjected to SOLiD next-generation sequence analysis and used as a template for reverse transcription synthesis, which was followed by ds-cDNA synthesis or PCR amplification. The ssRNA genome of EMLMV includes 9,280 nucleotides, excluding a 3′ terminal poly-adenylated tail. The genome includes a putative single, large open reading frame (ORF) that encodes a polyprotein of 3,011 amino acids, a short overlapping ORF of PIPO protein comprised of 71 amino acids and 5′ and 3′ non-coding regions of 108 and 136 nucleotides, respectively. The deduced amino acid sequence of the EMLMV polyprotein is relatively close to that of sweet potato mild mottle virus (SPMMV), with 37% shared sequence identity. Among the four ipomoviruses, only SPMMV and the putative genus member EMLMV contain a helper component-proteinase (HC-Pro) gene. Like SPMMV-HC-Pro, EMLMV-HC-Pro also contains the highly conserved PTK domain that is thought to be involved in the aphid-assisted transmission of potyviruses.

Robotic Disease Detection in Greenhouses: Combined Detection of Powdery Mildew and Tomato Spotted Wilt Virus

Robotic systems for disease detection in greenhouses are expected to improve disease control, increase yield, and reduce pesticide application. We present a robotic detection system for combined detection of two major threats of greenhouse bell peppers: Powdery mildew (PM) and Tomato spotted wilt virus (TSWV). The system is based on a manipulator, which facilitates reaching multiple detection poses. Several detection algorithms are developed based on principal component analysis (PCA) and the coefficient of variation (CV). Tests ascertain the system can successfully detect the plant and reach the detection pose required for PM (along the side of the plant), yet it has difficulties in reaching the TSWV detection pose (above the plant). Increasing manipulator work-volume is expected to solve this issue. For TSWV, PCA-based classification with leaf vein removal, achieved the highest classification accuracy (90%) while the accuracy of the CV methods was also high (85% and 87%). For PM, PCA-based pixel-level classification was high (95.2%) while leaf condition classification accuracy was low (64.3%) since it was determined based on the upper side of the leaf while disease symptoms start on its lower side. Exposure of the lower side of the leaf during detection is expected to improve PM condition detection.

The honeybee Apis mellifera contributes to Cucumber green mottle mosaic virus spread via pollination

The tobamovirus Cucumber green mottle mosaic virus (CGMMV) is efficiently transmitted between plants by mechanical contact. So far, no clear evidence has been reported regarding the transmission potential of the virus by beneficial pollinator insects. This study examined the capability of the well-known pollinator honeybee Apis mellifera to transmit CGMMV in cucurbits using melon and cucumber plants as a model. In order to provide a clear answer to that question, five experiments were designed on various scales performed under three environmental conditions. The results show that under protected cropping conditions, CGMMV is transmitted by the honeybees. The location of the beehive in relation to both the CGMMV primary inoculum source and the healthy plants during honeybee foraging plays an important role in the efficiency of CGMMV spread. Furthermore, in the presence of early stage CGMMV-inoculated plants, the efficiency of CGMMV spread to uninoculated plants placed on the honeybees’ path to the beehive may increase. To the authors’ knowledge, CGMMV transmission by honeybees has not yet been shown, and this study can be adopted for other tobamovirus related research.

A New Israeli Tobamovirus Isolate Infects Tomato Plants Harboring Tm-22 Resistance Genes

An outbreak of a new disease infecting tomatoes occurred in October-November 2014 at the Ohad village in Southern Israel. Symptomatic plants showed a mosaic pattern on leaves accompanied occasionally by narrowing of leaves and yellow spotted fruit. The disease spread mechanically and rapidly reminiscent of tobamovirus infection. Epidemiological studies showed the spread of the disease in various growing areas, in the South and towards the Southeast and Northern parts of the country within a year. Transmission electron microscope (TEM) analysis showed a single rod-like form characteristic to the Tobamovirus genus. We confirmed Koch’s postulates for the disease followed by partial host range determination and revealed that tomato cultivars certified to harbor the Tm-22 resistance gene are susceptible to the new viral disease. We further characterized the viral source of the disease using a range of antisera for serological detection and analyzed various virus genera and families for cross-reactivity with the virus. In addition, next generation sequencing of total small RNA was performed on two cultivars grown in two different locations. In samples collected from commercial cultivars across Israel, we found a single virus that caused the disease. The complete genome sequence of the new Israeli tobamovirus showed high sequence identity to the Jordanian isolate of tomato brown rugose fruit virus.

New weed hosts for Cucumber green mottle mosaic virus in wild Mediterranean vegetation

The Tobamovirus Cucumber green mottle mosaic virus (CGMMV) is considered a major risk for cucurbit crop production. In 2013, an outbreak of CGMMV in watermelon fields occurred in Israel causing severe crop damage. This event raised concern regarding the virus preservation potential in weeds within and surrounding cultivated cucurbit crops. Out of 11 surveyed weed species, six were ELISA-positive for CGMMV, although they were asymptomatic: Moluccella laevis, Withania somnifera, Amaranthus graecizans, A. muricatus, Ecballium elaterium and Chrozophora tinctoria. The presence of CGMMV in the weed species was verified by RT-PCR analysis and by bioassay to healthy melon, cucumber and Nicotiana benthamiana plants and to non-infected weed species. These results add species inside the Solanaceae, Euphorbiaceae and Lamiaceae families to CGMMV host range in weeds. Thus, weeds reservoir within and surrounding infected fields needs to be considered as a potential source for CGMMV infection of cultivated plants.

Using genomic analysis to identify tomato Tm-2 resistance-breaking mutations and their underlying evolutionary path in a new and emerging tobamovirus

AbstractIn September 2014, a new tobamovirus was discovered in Israel that was able to break Tm-2-mediated resistance in tomato that had lasted 55 years. The virus was isolated, and sequencing of its genome showed it to be tomato brown rugose fruit virus (ToBRFV), a new tobamovirus recently identified in Jordan. Previous studies on mutant viruses that cause resistance breaking, including Tm-2-mediated resistance, demonstrated that this phenotype had resulted from only a few mutations. Identification of important residues in resistance breakers is hindered by significant background variation, with 9–15% variability in the genomic sequences of known isolates. To understand the evolutionary path leading to the emergence of this resistance breaker, we performed a comprehensive phylogenetic analysis and genomic comparison of different tobamoviruses, followed by molecular modeling of the viral helicase. The phylogenetic location of the resistance-breaking genes was found to be among host-shifting clades, and this, together with the observation of a relatively low mutation rate, suggests that a host shift contributed to the emergence of this new virus. Our comparative genomic analysis identified twelve potential resistance-breaking mutations in the viral movement protein (MP), the primary target of the related Tm-2 resistance, and nine in its replicase. Finally, molecular modeling of the helicase enabled the identification of three additional potential resistance-breaking mutations.

Full-genome sequence of hibiscus chlorotic ringspot virus from Israel.

ABSTRACT Hibiscus rosa-sinensis is one of the most prevalent ornamental plants grown in private and public gardens. Hibiscus chlorotic ringspot virus (HCRSV) is a member of the Carmovirus genus, with a positive single-strand RNA that putatively encodes seven proteins. The complete genome of the first Israeli isolate of HCRSV, HCRSV-IL, comprises 3,908 nucleotides and shows 93% nucleotide sequence identity to the Singapore isolate and 87% identity to the Taiwanese isolate.