Ben W. Thomas

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH

Application of chemical fertilizer or manure can affect soil microorganisms directly by supplying nutrients and indirectly by altering soil pH. However, it remains uncertain which effect mostly shapes microbial community structure. We determined soil bacterial diversity and community structure by 454 pyrosequencing the V1-V3 regions of 16S rRNA genes after 7-years (2007–2014) of applying chemical nitrogen, phosphorus and potassium (NPK) fertilizers, composted manure or their combination to acidic (pH 5.8), near-neutral (pH 6.8) or alkaline (pH 8.4) Eutric Regosol soil in a maize-vegetable rotation in southwest China. In alkaline soil, nutrient sources did not affect bacterial Operational Taxonomic Unit (OTU) richness or Shannon diversity index, despite higher available N, P, K, and soil organic carbon in fertilized than in unfertilized soil. In contrast, bacterial OTU richness and Shannon diversity index were significantly lower in acidic and near-neutral soils under NPK than under manure or their combination, which corresponded with changes in soil pH. Permutational multivariate analysis of variance showed that bacterial community structure was significantly affected across these three soils, but the PCoA ordination patterns indicated the effect was less distinct among nutrient sources in alkaline than in acidic and near-neural soils. Distance-based redundancy analysis showed that bacterial community structures were significantly altered by soil pH in acidic and near-neutral soils, but not by any soil chemical properties in alkaline soil. The relative abundance (%) of most bacterial phyla was higher in near-neutral than in acidic or alkaline soils. The most dominant phyla were Proteobacteria (24.6%), Actinobacteria (19.7%), Chloroflexi (15.3%) and Acidobacteria (12.6%); the medium dominant phyla were Bacterioidetes (5.3%), Planctomycetes (4.8%), Gemmatimonadetes (4.5%), Firmicutes (3.4%), Cyanobacteria (2.1%), Nitrospirae (1.8%), and candidate division TM7 (1.0%); the least abundant phyla were Verrucomicrobia (0.7%), Armatimonadetes (0.6%), candidate division WS3 (0.4%) and Fibrobacteres (0.3%). In addition, Cyanobacteria and candidate division TM7 were more abundant in acidic soil, whereas Gemmatimonadetes, Nitrospirae and candidate division WS3 were more abundant in alkaline soil. We conclude that after 7-years of fertilization, soil bacterial diversity and community structure were shaped more by changes in soil pH rather than the direct effect of nutrient addition.

Effect of difference between day and night temperature on tomato (Lycopersicon esculentum Mill.) root activity and low molecular weight organic acid secretion

ABSTRACT The difference between day and night temperature (DIF) is a major environmental factor affecting crop growth, but the mechanisms are not fully understood. We investigated crop performance, root activity and concentrations of low molecular weight organic acids (LMWOAs) secreted by tomato (Lycopersicon esculentum Mill.) root under different DIF conditions. A fixed daily temperature of 25°C and five DIF treatments (−12, −6, 0, 6 and 12°C) were used to grow tomato in a climate chamber. Root/shoot ratio; leaf maximum photosynthetic rate (Pmax); root activity; total nitrogen (N), phosphorus (P) and potassium (K) concentrations in roots; and types and concentrations of LMWOAs were measured at different growth stages. Results showed that positive and negative DIFs inhibited the dry matter accumulation of aerial parts, while 0°C DIF was conducive to the accumulation. Compared to 0°C DIF, positive DIFs significantly increased root dry weight, Pmax, root activity and total N, P and K concentrations in roots, while negative DIFs had contrary effects. During the whole growth period, tomato root activity decreased in the order of fruit setting stage, mature stage and flowering stage. Tomato roots secreted oxalic acid, formic acid, malic acid, malonic acid, lactic acid, acetic acid, citric acid, succinic acid and propionic acid under positive DIFs, while acetic acid was not detected in the negative DIF treatments. Oxalic acid concentration was significantly higher than other LMWOAs. Furthermore, in the same growth stage, positive DIFs caused more LMWOA secretion than negative DIFs and 0°C DIF. There were significant positive correlations between the total LMWOA concentration and root activity, root/shoot ratio, Pmax and total N, P and K concentrations in roots. Based on the results, more attention should be paid to the potential effect on tomato growth posed by DIFs, positive DIFs have higher positive influence than negative DIFs, and 6°C DIF is best for greenhouse tomato growth.

Nitrous Oxide Emitted from Soil Receiving Anaerobically Digested Solid Cattle Manure

Limited information is available about soil nitrous oxide (NO) fluxes, NO emission factors (EFs), and yield-scaled NO emissions for biogas residues used to fertilize crops in semiarid regions. To address this knowledge gap, a 4-yr field experiment was conducted in a semiarid climate to determine growing season NO fluxes from soil receiving (i) anaerobically digested solid beef cattle manure (digestate), (ii) separated solids from the digestate (separated solids), and (iii) undigested solid beef cattle manure (cattle manure) applied to target one and two times the recommended rates (200 and 400 kg total N ha) for barley ( L.) forage, assuming 50% of N was annually plant available. Nitrous oxide fluxes were determined using vented static chambers. Over the four growing seasons, 95, 80, and 81% of the NO flux occurred within 36 d of applying digestate, separated solids, and cattle manure, respectively. The cumulative NO emissions with digestate were 4.7 and 4.1 times the values of the separated solids and cattle manure, respectively. The digestate NO EF was 13.6 and 10.6 times the values of the separated solids and cattle manure, respectively, but the NO EF based on applied mineral N was similar for all amendments. The yield-scaled NO emissions with digestate were 4.3 and 3.6 times the values of the separated solids and cattle manure, respectively. In the semiarid region of southern Alberta, liquid biogas residues have a higher risk for NO emissions than both the separated solid fraction of the biogas residues and undigested cattle manure.