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Dive into the research topics where Bethany E. Schaffer is active.

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Featured researches published by Bethany E. Schaffer.


Trends in Cell Biology | 2016

AMPK: An Energy-Sensing Pathway with Multiple Inputs and Outputs.

D. Grahame Hardie; Bethany E. Schaffer; Anne Brunet

AMP-activated protein kinase (AMPK) is a key regulator of energy balance expressed ubiquitously in eukaryotic cells. Here we review the canonical adenine nucleotide-dependent mechanism that activates AMPK when cellular energy status is compromised, as well as other, noncanonical activation mechanisms. Once activated, AMPK acts to restore energy homeostasis by promoting catabolic pathways, resulting in ATP generation, and inhibiting anabolic pathways that consume ATP. We also review the various hypothesis-driven and unbiased approaches that have been used to identify AMPK substrates and have revealed substrates involved in both metabolic and non-metabolic processes. We particularly focus on methods for identifying the AMPK target recognition motif and how it can be used to predict new substrates.


Cancer Research | 2010

Loss of p130 Accelerates Tumor Development in a Mouse Model for Human Small-Cell Lung Carcinoma

Bethany E. Schaffer; Kwon-Sik Park; Yiu G; Jamie F. Conklin; Chenwei Lin; Deborah L. Burkhart; Anthony N. Karnezis; Sweet-Cordero Ea; Julien Sage

Small-cell lung carcinoma (SCLC) is a neuroendocrine subtype of lung cancer. Although SCLC patients often initially respond to therapy, tumors nearly always recur, resulting in a 5-year survival rate of less than 10%. A mouse model has been developed based on the fact that the RB and p53 tumor suppressor genes are mutated in more than 90% of human SCLCs. Emerging evidence in patients and mouse models suggests that p130, a gene related to RB, may act as a tumor suppressor in SCLC cells. To test this idea, we used conditional mutant mice to delete p130 in combination with Rb and p53 in adult lung epithelial cells. We found that loss of p130 resulted in increased proliferation and significant acceleration of SCLC development in this triple-knockout mouse model. The histopathologic features of the triple-mutant mouse tumors closely resembled that of human SCLC. Genome-wide expression profiling experiments further showed that Rb/p53/p130-mutant mouse tumors were similar to human SCLC. These findings indicate that p130 plays a key tumor suppressor role in SCLC. Rb/p53/p130-mutant mice provide a novel preclinical mouse model to identify novel therapeutic targets against SCLC.


Cell Cycle | 2011

Characterization of the cell of origin for small cell lung cancer

Kwon-Sik Park; Mei-Chih Liang; David M. Raiser; Raffaella Zamponi; Rebecca R. Roach; Stephen Curtis; Zandra E. Walton; Bethany E. Schaffer; Caitlin M. Roake; Anne-Flore Zmoos; Christina Kriegel; Kwok-Kin Wong; Julien Sage; Carla F. Kim

Small cell lung carcinoma (SCLC) is a neuroendocrine subtype of lung cancer that affects more than 200,000 people worldwide every year with a very high mortality rate. Here, we used a mouse genetics approach to characterize the cell of origin for SCLC; in this mouse model, tumors are initiated by the deletion of the Rb and p53 tumor suppressor genes in the lung epithelium of adult mice. We found that mouse SCLCs often arise in the lung epithelium, where neuroendocrine cells are located, and that the majority of early lesions were composed of proliferating neuroendocrine cells. In addition, mice in which Rb and p53 are deleted in a variety of non-neuroendocrine lung epithelial cells did not develop SCLC. These data indicate that SCLC likely arises from neuroendocrine cells in the lung.


Oncogene | 2009

The retinoblastoma gene Rb and its family member p130 suppress lung adenocarcinoma induced by oncogenic K-Ras

Victoria M. Ho; Bethany E. Schaffer; Anthony N. Karnezis; Kwon-Sik Park; Julien Sage

Mutations of the retinoblastoma tumor suppressor gene RB are frequently observed in human cancers, but rarely in non-small cell lung carcinomas (NSCLCs). Emerging evidence also suggests that the RB-related gene p130 is inactivated in a subset of human NSCLCs. To directly test the specific tumor suppressor roles of RB and p130 in NSCLC, we crossed Rb and p130 conditional mutant mice to mice carrying a conditional oncogenic K-Ras allele. In this model, controlled oncogenic K-Ras activation leads to the development of adenocarcinoma, a major subtype of NSCLC. We found that loss of p130 accelerated the death of mice, providing direct evidence in vivo that p130 is a tumor suppressor gene, albeit a weak one in this context. Loss of Rb increased the efficiency of lung cancer initiation and resulted in the development of high-grade adenocarcinomas and rapid death. Thus, despite the low frequency of RB mutations in human NSCLCs and reports that K-Ras activation and loss of RB function are rarely found in the same human tumors, loss of Rb clearly cooperates with activation of oncogenic K-Ras in lung adenocarcinoma development in mice.


Journal of Cell Biology | 2010

G1 arrest and differentiation can occur independently of Rb family function

Stacey E. Wirt; Adam S. Adler; Véronique Gebala; James M. Weimann; Bethany E. Schaffer; Louis A. Saddic; Patrick Viatour; Hannes Vogel; Howard Y. Chang; Alex Meissner; Julien Sage

Repression of E2F target genes is required for cell cycle arrest in Rb family (Rb, p107, and p130)-deficient cells.


The EMBO Journal | 2017

AMPKα1-LDH pathway regulates muscle stem cell self-renewal by controlling metabolic homeostasis.

Marine Théret; Linda Gsaier; Bethany E. Schaffer; Gaëtan Juban; Sabrina Ben Larbi; Michèle Weiss-Gayet; Collodet Caterina; Marc Foretz; Dominique Desplanches; Pascual Sanz; Zizhao Zang; Lin Yang; Guillaume Vial; Benoit Viollet; Kei Sakamoto; Anne Brunet; Bénédicte Chazaud; Rémi Mounier

Control of stem cell fate to either enter terminal differentiation versus returning to quiescence (self‐renewal) is crucial for tissue repair. Here, we showed that AMP‐activated protein kinase (AMPK), the master metabolic regulator of the cell, controls muscle stem cell (MuSC) self‐renewal. AMPKα1−/− MuSCs displayed a high self‐renewal rate, which impairs muscle regeneration. AMPKα1−/− MuSCs showed a Warburg‐like switch of their metabolism to higher glycolysis. We identified lactate dehydrogenase (LDH) as a new functional target of AMPKα1. LDH, which is a non‐limiting enzyme of glycolysis in differentiated cells, was tightly regulated in stem cells. In functional experiments, LDH overexpression phenocopied AMPKα1−/− phenotype, that is shifted MuSC metabolism toward glycolysis triggering their return to quiescence, while inhibition of LDH activity rescued AMPKα1−/− MuSC self‐renewal. Finally, providing specific nutrients (galactose/glucose) to MuSCs directly controlled their fate through the AMPKα1/LDH pathway, emphasizing the importance of metabolism in stem cell fate.


Molecular Cell | 2011

Chemical genetic screen for AMPKα2 substrates uncovers a network of proteins involved in mitosis

Max R. Banko; Jasmina J. Allen; Bethany E. Schaffer; Erik W. Wilker; Peiling P. Tsou; Jamie L. White; Judit Villén; Beatrice Wang; Sara R. Kim; Kei Sakamoto; Steven P. Gygi; Lewis C. Cantley; Michael B. Yaffe; Kevan M. Shokat; Anne Brunet


Cell Metabolism | 2015

Identification of AMPK Phosphorylation Sites Reveals a Network of Proteins Involved in Cell Invasion and Facilitates Large-Scale Substrate Prediction

Bethany E. Schaffer; Rebecca S. Levin; Nicholas T. Hertz; Travis J. Maures; Michael L. Schoof; Pablo E. Hollstein; Bérénice A. Benayoun; Max R. Banko; Reuben J. Shaw; Kevan M. Shokat; Anne Brunet


Journal of Cell Biology | 2011

Notch signaling inhibits hepatocellular carcinoma following inactivation of the RB pathway

Patrick Viatour; Ursula Ehmer; Louis A. Saddic; Craig Dorrell; Jesper B. Andersen; Chenwei Lin; Anne-Flore Zmoos; Pawel K. Mazur; Bethany E. Schaffer; Austin Ostermeier; Hannes Vogel; Karl G. Sylvester; Snorri S. Thorgeirsson; Markus Grompe; Julien Sage


Elsevier | 2011

Chemical Genetic Screen for AMPKα2 Substrates Uncovers a Network of Proteins Involved in Mitosis

Max R. Banko; Jasmina J. Allen; Bethany E. Schaffer; Erik W. Wilker; Peiling Tsou; Jamie L. White; Judit Villén; Beatrice Wang; Sara R. Kim; Kei Sakamoto; Steven P. Gygi; Lewis C. Cantley; Michael B. Yaffe; Kevan M. Shokat; Anne Brunet

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Beatrice Wang

University of California

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Erik W. Wilker

Massachusetts Institute of Technology

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