Bobbi L. Helgason

Toward Improved Coefficients for Predicting Direct N2O Emissions from Soil in Canadian Agroecosystems

Agricultural soils emit nitrous oxide (N2O), a potent greenhouse gas. Predicting and mitigating N2O emissions is not easy. To derive national coefficients for N2O emissions from soil, we collated over 400 treatment evaluations (measurements) of N2O fluxes from farming systems in various ecoregions across Canada. A simple linear coefficient for fertilizer-induced emission of N2O in non-manured soils (1.18% of N applied) was comparable to that used by the Intergovernmental Panel on Climate Change (IPCC) (1.25% of N applied). Emissions were correlated to soil and crop management practices (manure addition, N fertilizer addition and inclusion of legumes in the rotation) as well as to annual precipitation. The effect of tillage on emissions was inconsistent, varying among experiments and even within experiments from year to year. In humid regions (e.g., Eastern Canada) no-tillage tended to enhance N2O emissions; in arid regions (e.g., Western Prairies) no-tillage sometimes reduced emissions. The variability of N2O fluxes shows that we cannot yet always distinguish between potential mitigation practices with small (e.g., <10%) differences in emission. Our analysis also emphasizes the need for developing consistent experimental approaches (e.g., ‘control’ treatments) and methodologies (i.e. measurement period lengths) for estimating N2O emissions.

Nitrogen dynamics in soil amended with composted cattle manure

The amount and pattern of plant-available nitrogen (N) release from composts are variable and not well-defined. We used a 425-d canola (Brassica napus L.) bioassay to follow the release of N from eight composted cattle manures applied to soil at 20 g kg-1. Two stockpiled manures, one inorganic fertilizer and an unamended control were also included for comparison. Eight consecutive 30-d growth cycles were conducted in a controlled environment chamber (20°C) and plant N uptake was measured. Total N uptake was greatest from the N fertilizer and least from the wood-chip bedded manure. Addition of compost increased N uptake by 27–99% compared with that in the control. Nitrogen uptake from compost was directly proportional to its inorganic N content (r2 = 0.98; P < 0.0001) showing that the initial inorganic N content of compost, analyzed prior to its application can be used to predict plant available N. In seven of the eight composts studied, less than 5% of organic N was mineralized over 425 d, suggesting that...

Estimating carbon retention in soils amended with composted beef cattle manure

Composted cattle manure is often used as a soil amendment to replenish nutrient pools and to supply a source of stable C. Compost composition affects the availability of nutrients and the stability of C following the addition of compost to soil. We investigated C mineralization in a loamy sand and a loam soil amended with nine composts, two fresh manures and alfalfa (Medicago sativa L.) hay at a target rate of 10 mg total C g-1 soil. Soils were incubated at 25°C for 168 d. There was a significant interaction between amendment and soil type on C mineralization but generally, the effect of soil texture on amendment decomposition was small. The composts were very dissimilar in composition and resulted in substantial differences in the amount of C retained in the soils (2-39% C added evolved as CO2). Total C evolved during the incubation period could be predicted from the NH4-N content and the NH4-N/NO3-N ratio of the composted manures (R2 = 0.91–0.93). Estimation of the C retained in soils amended with compo...

Endophytic root bacteria associated with the natural vegetation growing at the hydrocarbon contaminated Bitumount Provincial Historic site.

The Bitumount Provincial Historic site is the location of 2 of the worlds first oil-extracting and -refining operations. Despite hydrocarbon levels ranging from 330 to 24 700 mg·(kg soil)-1, plants have been able to recolonize the site through means of natural revegetation. This study was designed to achieve a better understanding of the plant-root-associated bacterial partnerships occurring within naturally revegetated hydrocarbon-contaminated soils. Root endophytic bacterial communities were characterized from representative plant species throughout the site by both high-throughput sequencing and culturing techniques. Population abundance of rhizosphere and root endosphere bacteria was significantly influenced (p < 0.05) by plant species and sampling location. In general, members of the Actinomycetales, Rhizobiales, Pseudomonadales, Burkholderiales, and Sphingomonadales orders were the most commonly identified orders. Community structure of root-associated bacteria was influenced by both plant species and sampling location. Quantitative real-time polymerase chain reaction was used to determine the potential functional diversity of the root endophytic bacteria. The gene copy numbers of 16S rRNA and 2 hydrocarbon-degrading genes (CYP153 and alkB) were significantly affected (p < 0.05) by the interaction of plant species and sampling location. Our findings suggest that some of the bacterial communities detected are known to exhibit plant growth promotion characteristics.

Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use

Long-term contrasts in agricultural management can shift soil resource availability with potential consequences to microbial carbon (C) use efficiency (CUE) and the fate of C in soils. Isothermal calorimetry was combined with 13C-labeled glucose stable isotope probing (SIP) of 16S rRNA genes to test the hypothesis that organically managed soils would support microbial communities with greater thermodynamic efficiency compared to conventional soils due to a legacy of lower resource availability and a resultant shift toward communities supportive of more oligotrophic taxa. Resource availability was greater in conventionally managed soils, with 3.5 times higher available phosphorus, 5% more nitrate, and 36% more dissolved organic C. The two management systems harbored distinct glucose-utilizing populations of Proteobacteria and Actinobacteria, with a higher Proteobacteria:Actinobacteria ratio (2.4 vs. 0.7) in conventional soils. Organically managed soils also harbored notable activity of Firmicutes. Thermodynamic efficiency indices were similar between soils, indicating that glucose was metabolized at similar energetic cost. However, differentially abundant glucose utilizers in organically managed soils were positively correlated with soil organic matter (SOM) priming and negatively correlated to soil nutrient and carbon availability, respiration, and heat production. These correlation patterns were strongly reversed in the conventionally managed soils indicating clear differentiation of microbial functioning related to soil resource availability. Fresh C addition caused proportionally more priming of SOM decomposition (57 vs. 51%) in organically managed soils likely due to mineralization of organic nutrients to satisfy microbial demands during glucose utilization in these more resource deprived soils. The additional heat released from SOM oxidation may explain the similar community level thermodynamic efficiencies between management systems. Restoring fertility to soils with a legacy of nutrient limitation requires a balanced supply of both nutrients and energy to protect stable SOM from microbial degradation. These results highlight the need to consider managing C for the energy it provides to ıcritical biological processes that underpin soil health.