Brendan C. Ebner

Tracking animals in freshwater with electronic tags: past, present and future

Considerable technical developments over the past half century have enabled widespread application of electronic tags to the study of animals in the wild, including in freshwater environments. We review the constraints associated with freshwater telemetry and biologging and the technical developments relevant to their use. Technical constraints for tracking animals are often influenced by the characteristics of the animals being studied and the environment they inhabit. Collectively, they influence which and how technologies can be used and their relative effectiveness. Although radio telemetry has historically been the most commonly used technology in freshwater, passive integrated transponder (PIT) technology, acoustic telemetry and biologgers are becoming more popular. Most telemetry studies have focused on fish, although an increasing number have focused on other taxa, such as turtles, crustaceans and molluscs. Key technical developments for freshwater systems include: miniaturization of tags for tracking small-size life stages and species, fixed stations and coded tags for tracking large samples of animals over long distances and large temporal scales, inexpensive PIT systems that enable mass tagging to yield population- and community-level relevant sample sizes, incorporation of sensors into electronic tags, validation of tag attachment procedures with a focus on maintaining animal welfare, incorporation of different techniques (for example, genetics, stable isotopes) and peripheral technologies (for example, geographic information systems, hydroacoustics), development of novel analytical techniques, and extensive international collaboration. Innovations are still needed in tag miniaturization, data analysis and visualization, and in tracking animals over larger spatial scales (for example, pelagic areas of lakes) and in challenging environments (for example, large dynamic floodplain systems, under ice). There seems to be a particular need for adapting various global positioning system and satellite tagging approaches to freshwater. Electronic tagging provides a mechanism to collect detailed information from imperilled animals and species that have no direct economic value. Current and future advances will continue to improve our knowledge of the natural history of aquatic animals and ecological processes in freshwater ecosystems while facilitating evidence-based resource management and conservation.

Monitoring by telemetry reveals differences in movement and survival following hatchery or wild rearing of an endangered fish

Species reintroduction is a management strategy used to conserve endemic fish biodiversity. The present study investigated stocking on-grown endangered trout cod (Maccullochella macquariensis) in the Murrumbidgee River, Australia. The hypothesis that post-juvenile dispersal underpins the long-term scarcity of adults recorded at fingerling stocking locations was also tested. Radio-tracking was used to quantify dispersal of stocked sub-adults (2-year old hatchery fish, n = 27) compared with fish originally stocked as fingerlings (unknown-age wild fish, n = 31), but we encountered poor survivorship of the former group (survivorship = 9% and 95%, respectively, at 13 months post release). The hatchery group exhibited both limited dispersal and large-scale dispersal (up to 55 km) downstream from the release site. Wild fish exhibited limited net dispersal, occupying home-ranges within a 13-km reach and occasionally undertook large-scale excursions (10-70 km). It is concluded that (1) re-establishment of cod populations based on release of on-grown fish is not straightforward, and (2) adults of this species have an ability to disperse away from stocking sites. The study demonstrates the benefit of using radio-tracking to monitor the movement and survivorship of stocked threatened fish and indicates a need to consider the effects of hatchery rearing when conducting fish reintroductions.

Amphidromy links a newly documented fish community of continental Australian streams, to oceanic islands of the West Pacific

Background Indo-Pacific high island streams experience extreme hydrological variation, and are characterised by freshwater fish species with an amphidromous life history. Amphidromy is a likely adaptation for colonisation of island streams following stochastic events that lead to local extirpation. In the Wet Tropics of north-eastern Australia, steep coastal mountain streams share similar physical characteristics to island systems. These streams are poorly surveyed, but may provide suitable habitat for amphidromous species. However, due to their ephemeral nature, common non-diadromous freshwater species of continental Australia are unlikely to persist. Consequently, we hypothesise that coastal Wet Tropics streams are faunally more similar, to distant Pacific island communities, than to nearby faunas of large continental rivers. Methods/Principal Findings Surveys of coastal Wet Tropics streams recorded 26 species, 10 of which are first records for Australia, with three species undescribed. This fish community is unique in an Australian context in that it contains mostly amphidromous species, including sicydiine gobies of the genera Sicyopterus, Sicyopus, Smilosicyopus and Stiphodon. Species presence/absence data of coastal Wet Tropics streams were compared to both Wet Tropics river networks and Pacific island faunas. ANOSIM indicated the fish fauna of north-eastern Australian coastal streams were more similar to distant Pacific islands (R = 0.76), than to nearby continental rivers (R = 0.98). Main Conclusions/Significance Coastal Wet Tropics streams are faunally more similar to distant Pacific islands (79% of species shared), than to nearby continental fauna due to two factors. First, coastal Wet Tropics streams lack many non-diadromous freshwater fish which are common in nearby large rivers. Second, many amphidromous species found in coastal Wet Tropics streams and Indo-Pacific islands remain absent from large rivers of the Wet Tropics. The evolutionary and conservation significance of this newly discovered Australian fauna requires clarification in the context of the wider amphidromous fish community of the Pacific.

Golden perch Macquaria ambigua are flexible spawners in the Darling River, Australia

Abstract The role of flow and floodplains for the recruitment of fishes in the Murray‐Darling Basin, Australia, remains a contentious issue. In this context, the reproductive ecology of golden perch Macquaria ambigua, a widespread, high‐profile angling species with a propensity to produce large numbers of semi‐pelagic eggs remains to be resolved. Back‐calculation of spawning dates from otoliths of juvenile golden perch (Macquaria ambigua) collected in August and November 1997 from the Menindee Lakes on the floodplain of the Darling River, in western New South Wales, Australia, advances understanding of spawning of this species in three ways: (1) golden perch spawned at lower temperatures (≤18.8°C) than has previously been reported from the Murray‐Darling Basin; (2) golden perch in the Menindee Lakes can be derived from spawning in all seasons of the year in contrast to what is apparent in more southerly locations of the Murray‐Darling Basin; and (3) spawning can occur in the absence of floods.

A cautionary tale: surrogates for radio-tagging practice do not always simulate the responses of closely related species

Telemetry is useful for monitoring rare and threatened species if they can be effectively tagged. Relatively abundant, closely related species are sometimes used as surrogates in refining tagging methods or testing the suitability of methods before transfer to rare and threatened species. A decision framework for developing a radio-tagging method of an endangered fish (Macquaria australasica; Percichthyidae) is presented based on experiences with tagging a closely related, surrogate species (Macquaria ambigua). Aquaria and field-based trials demonstrated the suitability of internally implanting a radio-tag with an externally exited antenna on the surrogate species. However, transferring this method to the endangered species under field conditions was unsuccessful in terms of mortality and/or radio-tag rejection. In this case, a surrogate species served to refine radio-tagging methods, but did not successfully indicate the suitability of these methods for a closely related species. This cautionary tale illustrates that surrogate species are not always effective and extrapolation of methods, even across closely related species, may be perilous.

Radio-tagging and tracking of translocated trout cod (Maccullochella macquariensis: Percichthyidae) in an upland river

Radio-tracking provides an effective means of studying the spatial ecology of threatened fishes where almost inaccessible habitats and species rarity render conventional mark-recapture methods impractical. Initially, validation of an effective radio-tagging method is required; in the present study, an aquaria trial based on nine hatchery-reared, adult male Maccullochella maquariensis (Percichthyidae) was conducted. Fish resumed feeding within days of being internally implanted with a radio-tag, and tag rejection was not observed (0%, n = 9) based on a 2-month observational period. Following release into an upland stream, individual-specific movements resulted in upstream (n = 1) and downstream (n = 6) dispersal as well as fidelity to the release site (n = 2) at the completion of the study. Individuals established small home-ranges (mean length of river used by an individual per diel period ranged from 47 to 292 m) and were most active in the early morning and evening (n = 6). Complete survivorship of individuals bearing active radio-transmitters (n = 8) was recorded up until 4 months after release. However, an estimated zero or one individual was alive when the last active radio-tag expired 11 months after release (n = 8). The present study highlights the use of radio-tracking in monitoring the dispersal and survivorship of small numbers of hatchery-reared threatened fish released into natural habitats as part of species re-introduction programs.

Effects of radio-tagging on two-year-old, endangered Macquarie perch (Macquaria australasica: Percichthyidae)

Radio-telemetry provides an effective means of studying the habitat use of threatened fishes where repeated recapture of individuals is undesirable. In these circumstances, it is especially important to ensure that radio-tagging methods are appropriate for the particular species of interest. An aquaria-based evaluation of three methods for radio-tagging two-year-old Macquaria australasica was conducted until 28 days post-surgery. Successful radio-tagging was determined from three indicators: (1) survival; (2) healing of the surgical incision or tag attachment site; and (3) resumption of feeding. Internal-coil radio-tags proved to be the most suitable radio-tag type, with complete survivorship and tag retention for the duration of the trial and fish commonly resuming normal feeding behaviour within two days post-surgery. In contrast, implanting a radio-tag internally and exiting a whip antenna is unsuitable for M. australasica on the basis of poor survivorship, rejection of radio-tags, and prolonged alteration of feeding behaviour. No mortality or radio-tag rejection was observed in association with externally attached whip-antenna radio-tags, and post-surgery resumption of feeding was comparable with that of fish with internal-coil radio-tags. However, external radio-tags caused substantial abrasion of the epidermis and loss of scales. Internal-coil tags should be applied in radio-tracking studies of this species.

Using remote underwater video to estimate freshwater fish species richness

Species richness records from replicated deployments of baited remote underwater video stations (BRUVS) and unbaited remote underwater video stations (UBRUVS) in shallow (<1 m) and deep (>1 m) water were compared with those obtained from using fyke nets, gillnets and beach seines. Maximum species richness (14 species) was achieved through a combination of conventional netting and camera-based techniques. Chanos chanos was the only species not recorded on camera, whereas Lutjanus argentimaculatus, Selenotoca multifasciata and Gerres filamentosus were recorded on camera in all three waterholes but were not detected by netting. BRUVSs and UBRUVSs provided versatile techniques that were effective at a range of depths and microhabitats. It is concluded that cameras warrant application in aquatic areas of high conservation value with high visibility. Non-extractive video methods are particularly desirable where threatened species are a focus of monitoring or might be encountered as by-catch in net meshes.

Radio-tagging flexible-bodied fish: temporary confinement enhances radio-tag retention

Animals that occupy holes or squeeze into interstitial spaces often have particularly flexible bodies and can be difficult to tag effectively. The present study evaluated three methods for radio-tagging the cryptic, eel-like fish Gadopsis bispinosus, a species that inhabits interstitial spaces among cobbles and boulders in streams. The three methods were an externally attached radio-tag with a whip antenna, an internally implanted coil radio-tag (internal coil) and an internally implanted radio-tag with an externally exited whip antenna (internal-external). Successful radio-tagging was determined in aquaria trials based on a combination of four indicators: (1) survival; (2) retention of the radio-tag; (3) healing of the surgical incision; and (4) rapid resumption of feeding. Externally attached radio-tags were shed and proved to be unsuitable (100%). Three of nine individuals with internal-external tagging completed the study with regular feeding, healed incisions and retained radio-tags. Conversely, five of nine individuals with internal coils were successful. This included two of three individuals held in either a simple environment for 3 days or for the duration of the trial and one of three individuals held in a complex environment. Temporary confinement following implantation with coil radio-tags offers a viable means of radio-tagging G. bispinosus. Temporary confinement following radio-tagging may also be useful for reducing radio-tag rejection and mortality for other fish species with similar body morphs and habitat use (e.g. eel species and sculpin).

A possible false negative: lack of evidence for trout predation on a remnant population of the endangered Macquarie perch, Macquaria australasica, in Cotter Reservoir, Australia

Abstract To investigate possible predation on a remnant population of the endangered Macquaria australasica in Cotter Reservoir, ACT, Australia, stomach content analysis was conducted on 63 rainbow trout Oncorhynchus mykiss and 24 brown trout Salmo trutta. Both predators were found to be piscivorous, with the frequency of piscivory generally increasing with body size. Goldfish Carassius auratus were the only fish species identified in stomach contents. That gape‐limitan on prevented trout from feeding on juvenile M. australasica was eliminated as a possibility based on: (1) the body depth of prey and the mouth‐size of predators; and (2) evidence that another species of similar dimensions was ingested by trout. Whether or not trout predation on M. australasica is an important process in Cotter Reservoir remains to be clarified. Juvenile M. austalasica do not reside in the parts of the reservoir from which most trout were actually sampled in the current study. Therefore, it is proposed that the lack of evidence for predation on M. australasica is potentially a false‐negative result.