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Dive into the research topics where Brian Bates is active.

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Featured researches published by Brian Bates.


The Journal of Neuroscience | 2010

Loss of Retrograde Endocannabinoid Signaling and Reduced Adult Neurogenesis in Diacylglycerol Lipase Knock-out Mice

Ying Gao; Dmitry V. Vasilyev; Maria B. Goncalves; Fiona V. Howell; Carl Hobbs; Melina Reisenberg; Ru Shen; Mei-Yi Zhang; Brian W. Strassle; Peimin Lu; Lilly Mark; Michael J. Piesla; Kangwen Deng; Evguenia V. Kouranova; Robert H. Ring; Garth T. Whiteside; Brian Bates; Frank S. Walsh; Gareth Williams; Menelas N. Pangalos; Tarek A. Samad; Patrick Doherty

Endocannabinoids (eCBs) function as retrograde signaling molecules at synapses throughout the brain, regulate axonal growth and guidance during development, and drive adult neurogenesis. There remains a lack of genetic evidence as to the identity of the enzyme(s) responsible for the synthesis of eCBs in the brain. Diacylglycerol lipase-α (DAGLα) and -β (DAGLβ) synthesize 2-arachidonoyl-glycerol (2-AG), the most abundant eCB in the brain. However, their respective contribution to this and to eCB signaling has not been tested. In the present study, we show ∼80% reductions in 2-AG levels in the brain and spinal cord in DAGLα−/− mice and a 50% reduction in the brain in DAGLβ−/− mice. In contrast, DAGLβ plays a more important role than DAGLα in regulating 2-AG levels in the liver, with a 90% reduction seen in DAGLβ−/− mice. Levels of arachidonic acid decrease in parallel with 2-AG, suggesting that DAGL activity controls the steady-state levels of both lipids. In the hippocampus, the postsynaptic release of an eCB results in the transient suppression of GABA-mediated transmission at inhibitory synapses; we now show that this form of synaptic plasticity is completely lost in DAGLα−/− animals and relatively unaffected in DAGLβ−/− animals. Finally, we show that the control of adult neurogenesis in the hippocampus and subventricular zone is compromised in the DAGLα−/− and/or DAGLβ−/− mice. These findings provide the first evidence that DAGLα is the major biosynthetic enzyme for 2-AG in the nervous system and reveal an essential role for this enzyme in regulating retrograde synaptic plasticity and adult neurogenesis.


Nature Genetics | 1999

Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation.

Györgyi Csankovszki; Barbara Panning; Brian Bates; John R. Pehrson; Rudolf Jaenisch

Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation


Molecular Pharmacology | 2010

Monoacylglycerol lipase activity is a critical modulator of the tone and integrity of the endocannabinoid system

Pranab K. Chanda; Ying Gao; Lilly Mark; Joan Btesh; Brian W. Strassle; Peimin Lu; Michael J. Piesla; Mei-Yi Zhang; Brendan Bingham; Albert J. Uveges; Dianne Kowal; David S. Garbe; Evguenia V. Kouranova; Robert H. Ring; Brian Bates; Menelas N. Pangalos; Jeffrey D. Kennedy; Garth T. Whiteside; Tarek A. Samad

Endocannabinoids are lipid molecules that serve as natural ligands for the cannabinoid receptors CB1 and CB2. They modulate a diverse set of physiological processes such as pain, cognition, appetite, and emotional states, and their levels and functions are tightly regulated by enzymatic biosynthesis and degradation. 2-Arachidonoylglycerol (2-AG) is the most abundant endocannabinoid in the brain and is believed to be hydrolyzed primarily by the serine hydrolase monoacylglycerol lipase (MAGL). Although 2-AG binds and activates cannabinoid receptors in vitro, when administered in vivo, it induces only transient cannabimimetic effects as a result of its rapid catabolism. Here we show using a mouse model with a targeted disruption of the MAGL gene that MAGL is the major modulator of 2-AG hydrolysis in vivo. Mice lacking MAGL exhibit dramatically reduced 2-AG hydrolase activity and highly elevated 2-AG levels in the nervous system. A lack of MAGL activity and subsequent long-term elevation of 2-AG levels lead to desensitization of brain CB1 receptors with a significant reduction of cannabimimetic effects of CB1 agonists. Also consistent with CB1 desensitization, MAGL-deficient mice do not show alterations in neuropathic and inflammatory pain sensitivity. These findings provide the first genetic in vivo evidence that MAGL is the major regulator of 2-AG levels and signaling and reveal a pivotal role for 2-AG in modulating CB1 receptor sensitization and endocannabinoid tone.


Nature Neuroscience | 1999

Neurotrophin–3 is required for proper cerebellar development

Brian Bates; Maribel Rios; A. Trumpp; C. Chen; Guoping Fan; J. M. Bishop; Rudolf Jaenisch

Neurotrophin–3 (NT–3) is a member of the neurotrophin family, which includes nerve growth factor (NGF), brain–derived neurotrophic factor (BDNF) and neurotrophin–4/5 (NT–4/5). These factors are crucial for development of the peripheral nervous system, but not the central nervous system (CNS), except that NT–3 and BDNF have been implicated in the postnatal development of the cerebellum. Here we created a conditional NT–3–deficient mutant, which showed abnormal cerebellar morphology.


Molecular Psychiatry | 2011

The psychiatric disease risk factors DISC1 and TNIK interact to regulate synapse composition and function

Qi Wang; Ei Charych; Vl Pulito; Janine B. Lee; Nicholas M. Graziane; Ra Crozier; Raquel Revilla-Sanchez; Mp Kelly; Allan J. Dunlop; Hannah Murdoch; N Taylor; Y Xie; M Pausch; Akiko Hayashi-Takagi; Koko Ishizuka; Saurav Seshadri; Brian Bates; Ken-ichi Kariya; Akira Sawa; Rj Weinberg; Stephen J. Moss; Houslay; Zhen Yan; Nicholas J. Brandon

Disrupted in schizophrenia 1 (DISC1), a genetic risk factor for multiple serious psychiatric diseases including schizophrenia, bipolar disorder and autism, is a key regulator of multiple neuronal functions linked to both normal development and disease processes. As these diseases are thought to share a common deficit in synaptic function and architecture, we have analyzed the role of DISC1 using an approach that focuses on understanding the protein–protein interactions of DISC1 specifically at synapses. We identify the Traf2 and Nck-interacting kinase (TNIK), an emerging risk factor itself for disease, as a key synaptic partner for DISC1, and provide evidence that the DISC1–TNIK interaction regulates synaptic composition and activity by stabilizing the levels of key postsynaptic density proteins. Understanding the novel DISC1–TNIK interaction is likely to provide insights into the etiology and underlying synaptic deficits found in major psychiatric diseases.


PLOS ONE | 2011

Dynamic Changes in the MicroRNA Expression Profile Reveal Multiple Regulatory Mechanisms in the Spinal Nerve Ligation Model of Neuropathic Pain

David von Schack; Michael J. Agostino; B. Stuart Murray; Yizheng Li; Padmalatha S. Reddy; Jin An Chen; Sung E. Choe; Brian W. Strassle; Christine Li; Brian Bates; Lynn Zhang; Huijuan Hu; Smita Kotnis; Brendan Bingham; Wei Liu; Garth T. Whiteside; Tarek A. Samad; Jeffrey D. Kennedy; Seena K. Ajit

Neuropathic pain resulting from nerve lesions or dysfunction represents one of the most challenging neurological diseases to treat. A better understanding of the molecular mechanisms responsible for causing these maladaptive responses can help develop novel therapeutic strategies and biomarkers for neuropathic pain. We performed a miRNA expression profiling study of dorsal root ganglion (DRG) tissue from rats four weeks post spinal nerve ligation (SNL), a model of neuropathic pain. TaqMan low density arrays identified 63 miRNAs whose level of expression was significantly altered following SNL surgery. Of these, 59 were downregulated and the ipsilateral L4 DRG, not the injured L5 DRG, showed the most significant downregulation suggesting that miRNA changes in the uninjured afferents may underlie the development and maintenance of neuropathic pain. TargetScan was used to predict mRNA targets for these miRNAs and it was found that the transcripts with multiple predicted target sites belong to neurologically important pathways. By employing different bioinformatic approaches we identified neurite remodeling as a significantly regulated biological pathway, and some of these predictions were confirmed by siRNA knockdown for genes that regulate neurite growth in differentiated Neuro2A cells. In vitro validation for predicted target sites in the 3′-UTR of voltage-gated sodium channel Scn11a, alpha 2/delta1 subunit of voltage-dependent Ca-channel, and purinergic receptor P2rx ligand-gated ion channel 4 using luciferase reporter assays showed that identified miRNAs modulated gene expression significantly. Our results suggest the potential for miRNAs to play a direct role in neuropathic pain.


PLOS ONE | 2010

Identification and Characterization of a Leucine-Rich Repeat Kinase 2 (LRRK2) Consensus Phosphorylation Motif

Pooja Pungaliya; Yuchen Bai; Kerri K Lipinski; Vasanti S. Anand; Saurabh Sen; Eugene L. Brown; Brian Bates; Peter H. Reinhart; Andrew B. West; Warren D. Hirst; Steven P. Braithwaite

Mutations in LRRK2 (leucine-rich repeat kinase 2) have been identified as major genetic determinants of Parkinsons disease (PD). The most prevalent mutation, G2019S, increases LRRK2s kinase activity, therefore understanding the sites and substrates that LRRK2 phosphorylates is critical to understanding its role in disease aetiology. Since the physiological substrates of this kinase are unknown, we set out to reveal potential targets of LRRK2 G2019S by identifying its favored phosphorylation motif. A non-biased screen of an oriented peptide library elucidated F/Y-x-T-x-R/K as the core dependent substrate sequence. Bioinformatic analysis of the consensus phosphorylation motif identified several novel candidate substrates that potentially function in neuronal pathophysiology. Peptides corresponding to the most PD relevant proteins were efficiently phosphorylated by LRRK2 in vitro. Interestingly, the phosphomotif was also identified within LRRK2 itself. Autophosphorylation was detected by mass spectrometry and biochemical means at the only F-x-T-x-R site (Thr 1410) within LRRK2. The relevance of this site was assessed by measuring effects of mutations on autophosphorylation, kinase activity, GTP binding, GTP hydrolysis, and LRRK2 multimerization. These studies indicate that modification of Thr1410 subtly regulates GTP hydrolysis by LRRK2, but with minimal effects on other parameters measured. Together the identification of LRRK2s phosphorylation consensus motif, and the functional consequences of its phosphorylation, provide insights into downstream LRRK2-signaling pathways.


Molecular and Cellular Neuroscience | 2009

The orphan GPCR, GPR88, modulates function of the striatal dopamine system: a possible therapeutic target for psychiatric disorders?

Sheree F. Logue; Steven M. Grauer; Janet E. Paulsen; Radka Graf; Noel Taylor; M. Amy Sung; Lynn Zhang; Zoë A. Hughes; Virginia L. Pulito; Feng Liu; Sharon Rosenzweig-Lipson; Nicholas J. Brandon; Karen L. Marquis; Brian Bates; Mark H. Pausch

In rodents, the orphan G protein-coupled receptor, Gpr88, is highly expressed in brain regions implicated in the pathophysiology of and is modulated by treatments for schizophrenia. We compared striatal function of Gpr88 knockout mice (Gpr88KOs) to wild-type mice using molecular, neurochemical and behavioral tests. Gpr88KOs lacked expression of Gpr88 in striatum, nucleus accumbens and layer IV of cortex. Gpr88KOs had normal striatal dopamine D2 receptor density and affinity and DARPP-32 expression but Gpr88KOs had higher basal striatal phosphorylated DARPP-32 Thr-34. In vivo microdialysis detected lower basal dopamine in Gpr88KOs while amphetamine-induced dopamine release was normal. Behaviorally, Gpr88KOs demonstrated disrupted prepulse inhibition of startle (PPI) and increased sensitivity to apomorphine-induced climbing and stereotypy (AICS) and amphetamine-stimulated locomotor activity. Antipsychotic administration to Gpr88KOs normalized the PPI deficit and blocked AICS. The modulatory role of Gpr88 in striatal dopamine function suggests it may be a new target for treatments for psychiatric disorders.


Biomarkers | 2012

Identification and quantification of osteopontin splice variants in the plasma of lung cancer patients using immunoaffinity capture and targeted mass spectrometry

Jiang Wu; Pooja Pungaliya; Eugenia Kraynov; Brian Bates

The expression patterns and functional roles of three osteopontin splice variants (OPNa, b, and c) in cancer metastasis and progression are not well understood due to the lack of reliable assays to differentiate the isoforms. We have developed a mass spectrometric method to quantify OPN isoforms in human plasma. The method is based on the immunocapture of all OPN isoforms, followed by MRM–MS analysis of isoform-specific tryptic peptides. We were able to simultaneously identify and quantify all three isoforms in the plasma of 10 healthy individuals and 10 non-small cell lung cancer (NSCLC) patients. Our results show that none of the OPN splice variants is cancer specific. However, OPNa, the major isoform in healthy and NSCLC plasma, is substantially elevated in NSCLC patients, whereas OPNb and OPNc are at equivalent levels in two populations.


Journal of Biological Chemistry | 2008

Ganglioside inhibition of neurite outgrowth requires Nogo receptor function - Identification of interaction sites and development of novel antagonists

Gareth Williams; Andrew J. Wood; Emma-Jane Williams; Ying Gao; Mary Lynn T. Mercado; Alan Katz; Diane Joseph-McCarthy; Brian Bates; Huai-Ping Ling; Ann Aulabaugh; Joe Zaccardi; Yuhong Xie; Menelas N. Pangalos; Frank S. Walsh; Patrick Doherty

Gangliosides are key players in neuronal inhibition, with antibody-mediated clustering of gangliosides blocking neurite outgrowth in cultures and axonal regeneration post injury. In this study we show that the ganglioside GT1b can form a complex with the Nogo-66 receptor NgR1. The interaction is shown by analytical ultracentrifugation sedimentation and is mediated by the sialic acid moiety on GT1b, with mutations in FRG motifs on NgR1 attenuating the interaction. One FRG motif was developed into a cyclic peptide (N-AcCLQKFRGSSC-NH2) antagonist of GT1b, reversing the GT1b antibody inhibition of cerebellar granule cell neurite outgrowth. Interestingly, the peptide also antagonizes neurite outgrowth inhibition mediated by soluble forms of the myelin-associated glycoprotein (MAG). Structure function analysis of the peptide point to the conserved FRG triplet being the minimal functional motif, and mutations within this motif inhibit NgR1 binding to both GT1b and MAG. Finally, using gene ablation, we show that the cerebellar neuron response to GT1b antibodies and soluble MAG is indeed dependent on NgR1 function. The results suggest that gangliosides inhibit neurite outgrowth by interacting with FRG motifs in the NgR1 and that this interaction can also facilitate the binding of MAG to the NgR1. Furthermore, the results point to a rational strategy for developing novel ganglioside antagonists.

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Rudolf Jaenisch

Massachusetts Institute of Technology

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Mark H. Pausch

National Institutes of Health

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Guoping Fan

University of California

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Ying Gao

Princeton University

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