Dan Sykes

Evolutionary Trade-Off between Vocal Tract and Testes Dimensions in Howler Monkeys

Summary Males often face a trade-off between investments in precopulatory and postcopulatory traits [1], particularly when male-male contest competition determines access to mates [2]. To date, studies of precopulatory strategies have largely focused on visual ornaments (e.g., coloration) or weapon morphology (e.g., antlers, horns, and canines). However, vocalizations can also play an important role in both male competition and female choice [3, 4, 5]. We investigated variation in vocal tract dimensions among male howler monkeys (Alouatta spp.), which produce loud roars using a highly specialized and greatly enlarged hyoid bone and larynx [6]. We examined the relative male investment in hyoids and testes among howler monkey species in relation to the level of male-male competition and analyzed the acoustic consequences of variation in hyoid morphology. Species characterized by single-male groups have large hyoids and small testes, suggesting high levels of vocally mediated competition. Larger hyoids lower formant frequencies, probably increasing the acoustic impression of male body size and playing a role analogous to investment in large body size or weaponry. Across species, as the number of males per group increases, testes volume also increases, indicating higher levels of postcopulatory sperm competition, while hyoid volume decreases. These results provide the first evidence of an evolutionary trade-off between investment in precopulatory vocal characteristics and postcopulatory sperm production.

A Polychaete's powerful punch: venom gland transcriptomics of Glycera reveals a complex cocktail of toxin homologs.

Glycerids are marine annelids commonly known as bloodworms. Bloodworms have an eversible proboscis adorned with jaws connected to venom glands. Bloodworms prey on invertebrates, and it is known that the venom glands produce compounds that can induce toxic effects in animals. Yet, none of these putative toxins has been characterized on a molecular basis. Here we present the transcriptomic profiles of the venom glands of three species of bloodworm, Glycera dibranchiata, Glycera fallax and Glycera tridactyla, as well as the body tissue of G. tridactyla. The venom glands express a complex mixture of transcripts coding for putative toxin precursors. These transcripts represent 20 known toxin classes that have been convergently recruited into animal venoms, as well as transcripts potentially coding for Glycera-specific toxins. The toxins represent five functional categories: Pore-forming and membrane-disrupting toxins, neurotoxins, protease inhibitors, other enzymes, and CAP domain toxins. Many of the transcripts coding for putative Glycera toxins belong to classes that have been widely recruited into venoms, but some are homologs of toxins previously only known from the venoms of scorpaeniform fish and monotremes (stonustoxin-like toxin), turrid gastropods (turripeptide-like peptides), and sea anemones (gigantoxin I-like neurotoxin). This complex mixture of toxin homologs suggests that bloodworms employ venom while predating on macroscopic prey, casting doubt on the previously widespread opinion that G. dibranchiata is a detritivore. Our results further show that researchers should be aware that different assembly methods, as well as different methods of homology prediction, can influence the transcriptomic profiling of venom glands.

Exploring miniature insect brains using micro-CT scanning techniques.

The capacity to explore soft tissue structures in detail is important in understanding animal physiology and how this determines features such as movement, behaviour and the impact of trauma on regular function. Here we use advances in micro-computed tomography (micro-CT) technology to explore the brain of an important insect pollinator and model organism, the bumblebee (Bombus terrestris). Here we present a method for accurate imaging and exploration of insect brains that keeps brain tissue free from trauma and in its natural stereo-geometry, and showcase our 3D reconstructions and analyses of 19 individual brains at high resolution. Development of this protocol allows relatively rapid and cost effective brain reconstructions, making it an accessible methodology to the wider scientific community. The protocol describes the necessary steps for sample preparation, tissue staining, micro-CT scanning and 3D reconstruction, followed by a method for image analysis using the freeware SPIERS. These image analysis methods describe how to virtually extract key composite structures from the insect brain, and we demonstrate the application and precision of this method by calculating structural volumes and investigating the allometric relationships between bumblebee brain structures.

A new fireworm (Amphinomidae) from the Cretaceous of Lebanon identified from three-dimensionally preserved myoanatomy

BackgroundRollinschaeta myoplena gen. et sp. nov is described from the Late Cretaceous (Cenomanian) Konservat-Lagerstätten of Hakel and Hjoula, Lebanon. The myoanatomy of the fossils is preserved in exceptional detail in three dimensions as calcium phosphate, allowing the musculature of the body wall, gut and parapodia to be reconstructed in detail.ResultsThe major muscle groups of polychaetes can be identified in Rollinschaeta, including longitudinal muscle bands, circular muscles, oblique muscles, the parapodial muscle complex and the gut musculature, with a resolution sufficient to preserve individual fibres. To allow meaningful comparison with the phosphatized fossil specimens, extant polychaetes were stained with iodine and visualised using microCT. Rollinschaeta myoplena possesses two pairs of dorsal longitudinal muscles, dorsal and ventral circular muscles and a single pair of ventral longitudinal muscles. While six longitudinal muscle bands are known from other polychaete groups, their presence in combination with circular muscles is unique to Amphinomidae, allowing these fossils to be diagnosed to family level based solely on their myoanatomy. The elongate, rectilinear body and equally sized, laterally projecting parapodia of Rollinschaeta are found only within Amphinominae, demonstrating that the Cretaceous species is derived amongst Amphinomida.ConclusionThe uniquely preserved myoanatomy of Rollinschaeta has allowed diagnosis of a fossil annelid to subfamily level using microCT as a comparative tool for exploring myoanatomy in fossil and extant polychaetes. Our results demonstrate that fossilized muscles can provide systematically informative anatomical detail and that they should be studied when preserved.

A quantitative comparison of micro-CT preparations in Dipteran flies

X-ray-based 3D-imaging techniques have gained fundamental significance in research areas ranging from taxonomy to bioengineering. There is demand for the characterisation of species-specific morphological adaptations, micro-CT (μCT) being the method of choice in small-scale animals. This has driven the development of suitable staining techniques to improve absorption-based tissue contrast. A quantitative account on the limits of current staining protocols for preparing μCT specimen, however, is still missing. Here we present a study that quantifies results obtained by combining a variety of different contrast agents and fixative treatments that provides general guidance for μCT applications, particularly suitable for insect species. Using a blowfly model system (Calliphora), we enhanced effective spatial resolution and, in particular, optimised tissue contrast enabling semi-automated segmentation of soft and hard tissue from μCT data. We introduce a novel probabilistic measure of the contrast between tissues: PTC. Our results show that a strong iodine solution provides the greatest overall increase in tissue contrast, however phosphotungstic acid offers better inter-tissue discriminability. We further show that using paraformaldehyde as a fixative as opposed to ethanol, slows down the uptake of a staining solution by approximately a factor of two.

Mineral weathering and soil development in the earliest land plant ecosystems

Land colonization by plants and their fungal and bacterial symbionts during the Paleozoic was fundamental to the evolution of terrestrial ecosystems, but how these early communities influenced mineral weathering and soil development remains largely unknown. We investigated cryptogamic ground covers (CGCs) in Iceland to identify modern analogous communities and to characterize soil structure and biologically mediated weathering features. Using a novel application of X-ray microcomputed tomography, we show that moss-dominated CGCs and their soils are not adequate analogues of early communities. Comparisons with the 407 Ma Rhynie Chert (Scotland) biota indicate that modern CGCs dominated by lichens, liverworts, and their associated symbionts (fungi, cyanobacteria) are more representative of early soil-forming communities. Liverwort and lichen soils are thin, and their depth and complexity are constrained by the size and growth form of the dominant plants or lichens. They are aggregated and stabilized by cyanobacteria, mycorrhizal and lichenized fungi, rhizoids, and associated exudates. Smectite was associated with liverwort but not with moss CGC soils. Soil grain dissolution features are diverse and attributable to different organisms (e.g., bacteria, fungi) and types of interaction (e.g., symbiosis). We postulate that such features provide a novel indirect means of inferring biotic interactions in paleosols.

A eukaryote assemblage intercalated with Marinoan glacial deposits in South Australia

Composite hematite–silica structures recovered from a siltstone bed in the Elatina Formation of South Australia include (1) sub-circular to whorl-shaped forms, (2) elongate to half-moon-shaped forms and (3) and lozenge-shaped forms locally linked into chains. They range from 200 to 500 µm in diameter and are interpreted as eukaryote tests. Evidence for internal etching of a calcite core of some tests indicates that at least some of the hematite–silica fabrics were acquired through replacement. Carbon isotope values of −20‰ δ13C are suggestive of precipitation by microbial activity, and imply a change in ambient fluid chemistry associated with a pH reduction. The tests occur within sandstone beds that were deposited on a tidally modulated braidplain during the Marinoan glaciation at the end of the Cryogenian. The quartz grains in the sandstone sample lack the typical textures (surface striae, internal fractures or irregular grain boundaries) expected for glacially transported material. Thus, on textural grounds we argue that the eukaryote tests represent a proglacial ecosystem during a late Cryogenian snowball Earth event. Supplementary material: Video files of digital X-ray tomographs (μCT) in the longitudinal and transverse planes are available at: https://doi.org/10.6084/m9.figshare.c.2209723.

X-ray micro-computed tomography (Micro-CT) of pyrite-permineralized fruits and seeds from the London clay formation (Ypresian) conserved in silicone oil: A critical evaluation

Pyrite-permineralized fruits and seeds from the London Clay Formation (Ypresian; England) in the NHMUK are stored in silicone oil to retard decay processes. X-ray micro-computed tomography (micro-CT) has revealed internal morphology for multiple holotypes (including severely cracked and encrusted specimens) scanned in the protective fluid. Silicone oil alone has a similar X-ray attenuation to parts of the specimens, causing minor uncertainty for digitally rendered surfaces, but key systematic characters are readily visualized. Further work is needed to optimize visualization of fine-scale cellular detail. Labelling and segmentation to visualize important structures is achievable with these micro-CT datasets. However, manual labelling of individual slices is required, and defining boundaries between features can be difficult due to differential pyritization and silicone oil permeation. Digital sections through specimens can be made in any orientation and digital locule casts can be produced for studies in ...

Complex flow in the nasal region of guitarfishes.

Scent detection in an aquatic environment is dependent on the movement of water. We set out to determine the mechanisms for moving water through the olfactory organ of guitarfishes (Rhinobatidae, Chondrichthyes) with open nasal cavities. We found at least two. In the first mechanism, which we identified by observing dye movement in the nasal region of a life-sized physical model of the head of Rhinobatos lentiginosus mounted in a flume, olfactory flow is generated by the guitarfishs motion relative to water, e.g. when it swims. We suggest that the pressure difference responsible for motion-driven olfactory flow is caused by the guitarfishs nasal flaps, which create a region of high pressure at the incurrent nostril, and a region of low pressure in and behind the nasal cavity. Vortical structures in the nasal region associated with motion-driven flow may encourage passage of water through the nasal cavity and its sensory channels, and may also reduce the cost of swimming. The arrangement of vortical structures is reminiscent of aircraft wing vortices. In the second mechanism, which we identified by observing dye movement in the nasal regions of living specimens of Glaucostegus typus, the guitarfishs respiratory pump draws flow through the olfactory organ in a rhythmic (0.5-2 Hz), but continuous, fashion. Consequently, the respiratory pump will maintain olfactory flow whether the guitarfish is swimming or at rest. Based on our results, we propose a model for olfactory flow in guitarfishes with open nasal cavities, and suggest other neoselachians which this model might apply to.

Homologous Fruit Characters in Geographically Separated Genera of Extant and Fossil Torricelliaceae (Apiales)

Recognition of Torricellia DC, Melanophylla Baker, and Aralidium Miq. as members of the same angiosperm family, Torricelliaceae, has come relatively recently, bolstered by analyses of molecular sequence data. Fruits of all three genera, endemic to eastern Asia, Madagascar, and Malesia, respectively, were compared morphologically and anatomically as a basis for evaluating systematic relationships among extant and fossil representatives. Application of X-ray tomography to fossil and extant fruits has augmented traditional approaches of physical sectioning and LM to facilitate more thorough systematic comparisons. The fruits vary from subglobose (Torricellia) to boat shaped (Melanophylla) to elongate-ellipsoidal (Aralidium) but are consistent in being tricarpellate and trilocular but with only one fertile locule. In Torricellia and Melanophylla the sterile lateral locules become larger than the central seed-bearing locule, but in Aralidium the pair of sterile locules becomes enveloped within the greatly enlarged fertile locule. In all three genera, the sterile lateral carpels each contain a prominent circular to elliptical aperture in the endocarp wall. A germination valve is located near the apex of the fertile locule in Torricellia and runs the length of the fertile locule in Melanophylla and Aralidium fruits. This work shows that the fruits of these three genera are distinctive in their morphology and anatomy, allowing for identification of fossils to the generic level, and supports the previous recognition of Torricellia from the middle Eocene of North America and from the middle Eocene to middle Miocene of Europe.