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Dive into the research topics where Daniel E. Warren is active.

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Featured researches published by Daniel E. Warren.


Redox biology | 2014

Role of GLUT1 in regulation of reactive oxygen species.

Stanley Andrisse; Rikki M. Koehler; Joseph E. Chen; Gaytri Patel; Vivek Vallurupalli; Benjamin Ratliff; Daniel E. Warren; Jonathan S. Fisher

In skeletal muscle cells, GLUT1 is responsible for a large portion of basal uptake of glucose and dehydroascorbic acid, both of which play roles in antioxidant defense. We hypothesized that conditions that would decrease GLUT1-mediated transport would cause increased reactive oxygen species (ROS) levels in L6 myoblasts, while conditions that would increase GLUT1-mediated transport would result in decreased ROS levels. We found that the GLUT1 inhibitors fasentin and phloretin increased the ROS levels induced by antimycin A and the superoxide generator pyrogallol. However, indinavir, which inhibits GLUT4 but not GLUT1, had no effect on ROS levels. Ataxia telangiectasia mutated (ATM) inhibitors and activators, previously shown to inhibit and augment GLUT1-mediated transport, increased and decreased ROS levels, respectively. Mutation of an ATM target site on GLUT1 (GLUT1-S490A) increased ROS levels and prevented the ROS-lowering effect of the ATM activator doxorubicin. In contrast, expression of GLUT1-S490D lowered ROS levels during challenge with pyrogallol, prevented an increase in ROS when ATM was inhibited, and prevented the pyrogallol-induced decrease in insulin signaling and insulin-stimulated glucose transport. Taken together, the data suggest that GLUT1 plays a role in regulation of ROS and could contribute to maintenance of insulin action in the presence of ROS.


PLOS ONE | 2015

Transcriptomic Responses of the Heart and Brain to Anoxia in the Western Painted Turtle

Sarah W. Keenan; Craig A. Hill; Cyriac Kandoth; Leslie Thomas Buck; Daniel E. Warren

Painted turtles are the most anoxia-tolerant tetrapods known, capable of surviving without oxygen for more than four months at 3°C and 30 hours at 20°C. To investigate the transcriptomic basis of this ability, we used RNA-seq to quantify mRNA expression in the painted turtle ventricle and telencephalon after 24 hours of anoxia at 19°C. Reads were obtained from 22,174 different genes, 13,236 of which were compared statistically between treatments for each tissue. Total tissue RNA contents decreased by 16% in telencephalon and 53% in ventricle. The telencephalon and ventricle showed ≥ 2x expression (increased expression) in 19 and 23 genes, respectively, while only four genes in ventricle showed ≤ 0.5x changes (decreased expression). When treatment effects were compared between anoxic and normoxic conditions in the two tissue types, 31 genes were increased (≥ 2x change) and 2 were decreased (≤ 0.5x change). Most of the effected genes were immediate early genes and transcription factors that regulate cellular growth and development; changes that would seem to promote transcriptional, translational, and metabolic arrest. No genes related to ion channels, synaptic transmission, cardiac contractility or excitation-contraction coupling changed. The generalized expression pattern in telencephalon and across tissues, but not in ventricle, correlated with the predicted metabolic cost of transcription, with the shortest genes and those with the fewest exons showing the largest increases in expression.


Frontiers in Genetics | 2018

Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance

Claire L. Riggs; Amanda Summers; Daniel E. Warren; Göran E. Nilsson; Sjannie Lefevre; W. Wesley Dowd; Sarah L. Milton; Jason E. Podrabsky

Background: Extreme anoxia tolerance requires a metabolic depression whose modulation could involve small non-coding RNAs (small ncRNAs), which are specific, rapid, and reversible regulators of gene expression. A previous study of small ncRNA expression in embryos of the annual killifish Austrofundulus limnaeus, the most anoxia-tolerant vertebrate known, revealed a specific expression pattern of small ncRNAs that could play important roles in anoxia tolerance. Here, we conduct a comparative study on the presence and expression of small ncRNAs in the most anoxia-tolerant representatives of several major vertebrate lineages, to investigate the evolution of and mechanisms supporting extreme anoxia tolerance. The epaulette shark (Hemiscyllium ocellatum), crucian carp (Carassius carassius), western painted turtle (Chrysemys picta bellii), and leopard frog (Rana pipiens) were exposed to anoxia and recovery, and small ncRNAs were sequenced from the brain (one of the most anoxia-sensitive tissues) prior to, during, and following exposure to anoxia. Results: Small ncRNA profiles were broadly conserved among species under normoxic conditions, and these expression patterns were largely conserved during exposure to anoxia. In contrast, differentially expressed genes are mostly unique to each species, suggesting that each species may have evolved distinct small ncRNA expression patterns in response to anoxia. Mitochondria-derived small ncRNAs (mitosRNAs) which have a robust response to anoxia in A. limnaeus embryos, were identified in the other anoxia tolerant vertebrates here but did not display a similarly robust response to anoxia. Conclusion: These findings support an overall stabilization of the small ncRNA transcriptome during exposure to anoxic insults, but also suggest that multiple small ncRNA expression pathways may support anoxia tolerance, as no conserved small ncRNA response was identified among the anoxia-tolerant vertebrates studied. This may reflect divergent strategies to achieve the same endpoint: anoxia tolerance. However, it may also indicate that there are multiple cellular pathways that can trigger the same cellular and physiological survival processes, including hypometabolism.


The Journal of Experimental Biology | 2017

The effects of pH and Pi on tension and Ca2+ sensitivity of ventricular myofilaments from the anoxia-tolerant painted turtle

Cornelia E. Fanter; Kenneth S. Campbell; Daniel E. Warren

ABSTRACT We aimed to determine how increases in intracellular H+ and inorganic phosphate (Pi) to levels observed during anoxic submergence affect contractility in ventricular muscle of the anoxia-tolerant Western painted turtle, Chrysemys picta bellii. Skinned multicellular preparations were exposed to six treatments with physiologically relevant levels of pH (7.4, 7.0, 6.6) and Pi (3 and 8 mmol l−1). Each preparation was tested in a range of calcium concentrations (pCa 9.0–4.5) to determine the pCa–tension relationship for each treatment. Acidosis significantly decreased contractility by decreasing Ca2+ sensitivity (pCa50) and tension development (P<0.001). Increasing [Pi] also decreased contractility by decreasing tension development at every pH level (P<0.001) but, alone, did not affect Ca2+ sensitivity (P=0.689). Simultaneous increases in [H+] and [Pi] interacted to attenuate the decreased tension development and Ca2+ sensitivity (P<0.001), possibly reflecting a decreased sensitivity to Pi when it is present as the dihydrogen phosphate form, which increases as pH decreases. Compared with that of mammals, the ventricle of turtles exhibits higher Ca2+ sensitivity, which is consistent with previous studies of ectothermic vertebrates. Summary: Myofilament contractility of turtle ventricle is more sensitive to physiological levels of acidosis than to increased inorganic phosphate. The myofilament calcium sensitivities of ventricles from turtles and other ectotherms are similar.


Herpetologica | 2014

Buoyancy Control in Cold-Submerged Painted Turtles: Implications for Overwintering Physiology and Behavior

Elizabeth A. Cantrell; Caroline M.Dong; Craig A. Hill; Daniel E. Warren

Abstract:  Western Painted Turtles (Chrysemys picta bellii) are the most anoxia-tolerant tetrapods known, capable of surviving anaerobically at 3°C for nearly 5 mo. In the northernmost latitudes of their range, adult painted turtles can experience winters lasting 6–7 mo. During this time, the pond surface is covered with ice and snow, denying the turtles access to air and trapping them in water that can become severely hypoxic or anoxic. Previous studies have reported that turtles overwinter near the bottom of ponds, either buried in mud or on top of the substrate, where oxygen levels are hypoxic or anoxic. The oxygen is depleted by other respiring biomass within the mud, but why the turtles are found on or within it is not understood. To better understand the overwintering behavior of painted turtles, we conducted a series of laboratory experiments to determine how a turtles buoyancy is affected by temperature, depth, and access to air. Acclimating turtles to 3°C resulted in a large variation in turtle buoyancy, but preventing access to air caused all turtles to become negatively buoyant. We suggest that painted turtles overwinter in the mud or on the pond bottom not necessarily because of any particular behavioral adaptation, but simply because they become negatively buoyant while overwintering without access to air.


Genome Biology | 2013

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

H. Bradley Shaffer; Patrick Minx; Daniel E. Warren; Andrew M. Shedlock; Robert C. Thomson; Nicole Valenzuela; John Abramyan; Chris T. Amemiya; Daleen Badenhorst; Kyle K. Biggar; Glen M. Borchert; Rachel M. Bowden; Edward L. Braun; Anne M. Bronikowski; Benoit G. Bruneau; Leslie Thomas Buck; Blanche Capel; Todd A. Castoe; Mike Czerwinski; Kim D. Delehaunty; Scott V. Edwards; Catrina C. Fronick; Matthew K. Fujita; Lucinda Fulton; Tina Graves; Richard E. Green; Wilfried Haerty; Ramkumar Hariharan; Omar Hernandez; LaDeana W. Hillier


The FASEB Journal | 2015

Cardiac pH Regulation and Buffering of the Western Painted Turtle (Chrysemys picta belli)

Michael Oxendine; Daniel E. Warren


The FASEB Journal | 2014

Regulation of reactive oxygen species in L6 myoblasts by glucose transporter 1 (693.5)

Stanley Andrisse; Rikki M. Koehler; Joseph E. Chen; Gaytri Patel; Vivek Vallurupalli; Benjamin Ratliff; Daniel E. Warren; Jonathan S. Fisher


The FASEB Journal | 2014

Insights into kidney function during recovery from anoxia in the painted turtle (1099.2)

Craig A. Hill; Daniel E. Warren


The FASEB Journal | 2013

RNA-seq reveals a robust transcriptomic response during anoxia in the Western painted turtle

Daniel E. Warren; Craig A. Hill; Cyriac Kandoth; Leslie Thomas Buck

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Catrina C. Fronick

Washington University in St. Louis

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Cyriac Kandoth

Washington University in St. Louis

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Glen M. Borchert

University of South Alabama

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