Daniel Galiano

DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents

Closely related sympatric species commonly develop different ecological strategies to avoid competition. Ctenomys minutus and C. flamarioni are subterranean rodents parapatrically distributed in the southern Brazilian coastal plain, showing a narrow sympatric zone. To gain understanding on food preferences and possible competition for food resources, we evaluated their diet composition performing DNA metabarcoding analyzes of 67 C. minutus and 100 C. flamarioni scat samples, collected along the species geographical ranges. Thirteen plant families, mainly represented by Poaceae, Araliaceae, Asteraceae and Fabaceae, were identified in the diet of C. minutus. For C. flamarioni, 10 families were recovered, with a predominance of Poaceae, Araliaceae and Asteraceae. A significant correlation between diet composition and geographical distance was detected in C. minutus, whereas the diet of C. flamarioni was quite homogeneous throughout its geographical distribution. No significant differences were observed between males and females of each species. However, differences in diet composition between species were evident according to multivariate analysis. Our results suggest some level of diet partitioning between C. flamarioni and C. minutus in the sympatric region. While the first species is more specialized on few plant items, the second showed a more varied and heterogeneous diet pattern among individuals. These differences might have been developed to avoid competition in the region of co-occurrence. Resource availability in the environment also seems to influence food choices. Our data indicate that C. minutus and C. flamarioni are generalist species, but that some preference for Poaceae, Asteraceae and Araliaceae families can be suggested for both rodents.

Population dynamics of Akodon montensis and Oligoryzomys nigripes in an Araucaria forest of Southern Brazil

Abstract We investigated the demographic parameters and the relationships between population density and extrinsic factors (temperature, rainfall, humidity and insolation) of two sigmodontine rodents (Akodon montensis and Oligoryzomys nigripes) in an Araucaria forest of southern Brazil. We followed the Cormarck-Jolly-Seber (CJS) method to estimate population parameters and density for each trapping session from November 2008 to August 2009. The relationships between density and extrinsic factors for each month were tested by simple linear regressions. Akodon montensis displayed the highest population size in three of the eight samples and showed no associations with any of the extrinsic factors analyzed. This species had higher estimated mortality than recruitment for all the seasons. Oligoryzomys nigripes presented higher population size in four of the eight samples, and density was associated with low temperatures and higher rainfall. The species showed similar estimated mortality and recruitment during the seasons, and the population size increased substantially during winter. The sex ratio was not biased in any of the species. In general, these rodents could be highly variable in time, and the observed abundance variations between seasons are in accordance with patterns described in other studies.

Genetic pool information reflects highly suitable areas: the case of two parapatric endangered species of Tuco-tucos (Rodentia: Ctenomiydae).

Conservation of small mammals requires knowledge of the genetically and ecologically meaningful spatial scales at which species respond to habitat modifications. Conservation strategies can be improved through the use of ecological niche models and genetic data to classify areas of high environmental suitability. In this study, we applied a Maxent model integrated with genetic information (nucleotide diversity, haplotype diversity and Fus Fs neutrality tests) to evaluate potential genetic pool populations with highly suitable areas for two parapatric endangered species of tuco-tucos (Ctenomys minutus and C. lami). Our results demonstrated that both species were largely influenced by vegetation and soil variables at a landscape scale and inhabit a highly specific niche. Ctenomys minutus was also influenced by the variable altitude; the species was associated with low altitudes (sea level). Our model of genetic data associated with environmental suitability indicate that the genetic pool data were associated with highly suitable areas for C. minutus. This pattern was not evident for C. lami, but this outcome could be a consequence of the restricted range of the species. The preservation of species requires not only detailed knowledge of their natural history and genetic structure but also information on the availability of suitable areas where species can survive, and such knowledge can aid significantly in conservation planning. This finding reinforces the use of these two techniques for planning conservation actions.

Sharing the Space: Distribution, Habitat Segregation and Delimitation of a New Sympatric Area of Subterranean Rodents

Subterranean rodents of the genus Ctenomys usually present an allopatric or parapatric distribution. Currently, two cases of sympatry have been recognized for the genus in the coastal dunes of southern Argentina and southern Brazil. In this context, they are ideal models to test hypotheses about the factors that delimit the patterns of space use and to understand interspecific interactions in small mammals. We investigated the vegetation structure, plant biomass and soil hardness selected by two species of subterranean rodents (Ctenomys flamarioni and C. minutus) when distributed in sympatry and allopatry from nine different areas along the line of coastal dunes in southern Brazil. In addition, our work presents a new record of a third area of sympatry for the genus Ctenomys. Ctenomys flamarioni and C. minutus show habitat segregation in the area where they occur in sympatry. These species show segregation in their selection of microhabitats, differing in relation to soil hardness, plant biomass, and plant cover. Ctenomys flamarioni showed a distinction in habitat selection when occurring in allopatry and sympatry, whereas C. minutus selected the same habitat characteristics under both conditions. A possible explanation to the observed pattern is that these species have acquired different adaptations over time which allows them the ability to exploit different resources and thus avoid competitive interactions all together.

Wet soils affect habitat selection of a solitary subterranean rodent (Ctenomys minutus) in a Neotropical region

Subterranean rodents are characterized by limited individual mobility and patchy distribution of local populations. Habitat patches where the species is absent may either be unoccupied, but suitable patches, or in fact unsuitable as habitat due to specific habitat features. In the coastal plain of southern Brazil, Ctenomys minutus (Ctenomyidae) inhabits sandy grasslands and dunes. The aim of our study was to analyze the relationship between the distribution of this subterranean rodent and its environment. We considered vegetation and soil features. Our results showed that habitat occupancy patterns of C. minutus are determined by soil moisture and vegetation (food supply), but there might be other habitat features that regulate the habitat choice of this mammal. Habitat discontinuities in the coastal plain of southern Brazil, with numerous barriers to dispersal, are responsible for restricting individuals to their natal areas. This might result in increased intraspecific competition within each population and, consequently, in inbreeding.

Medium- and large-sized mammals in a steppic savanna area of the Brazilian Pampa: survey and conservation issues of a poorly known fauna

The wildlife of the Brazilian Pampa is threatened by large-scale habitat loss, due in particular to the expansion of soybean cultivation and the conversion of grasslands areas into extensive areas of silviculture. It is essential to study how the mammal fauna copes with the highly fragmented, human-influenced, non-protected landscape. Our study presents the results of a survey of the large- and medium-sized mammals of a typical human-influenced steppic savanna area of the Pampa biome. The survey was conducted exclusively with the use of camera traps over a period of 16 months. The relative frequencies of species in the area were evaluated. We recorded 18 species, some of them locally threatened (Tamandua tetradactyla, Alouatta caraya, Leopardus colocolo, Leopardus geoffroyi, Leopardus wiedii, Puma yagouaroundi, Mazama gouazoubira and Cuniculus paca). Several species were found to thrive in the area; however, many species were considered rare, and undoubtedly new species could be recorded if we continued the sampling. Our results contribute to the knowledge of faunal diversity in the Pampa biome and associated habitats, warn about threats and provide support for conservation measures.

Niche suitability affects development: skull asymmetry increases in less suitable areas.

For conservation purposes, it is important to take into account the suitability of a species to particular habitats; this information may predict the long-term survival of a species. In this sense, morphological measures of developmental stress, such as fluctuating asymmetry, can be proxies for an individual’s performance in different regions. In this study, we conducted tests to determine whether areas with different levels of suitability for a species (generated by ecological niche models) were congruent with morphological markers that reflect environmental stress and morphological variance. We generated a Maxent niche model and compared the suitability assessments of several areas with the skull morphology data (fluctuating asymmetry and morphological disparity) of populations of the Atlantic forest endemic to Brazil rodent Akodon cursor. Our analyses showed a significant negative relationship between suitability levels and fluctuating asymmetry levels, which indicates that in less suitable areas, the individuals experience numerous disturbances during skull ontogeny. We have not found an association between morphological variance and environmental suitability. As expected, these results suggest that in environments with a lower suitability, developmental stress is increased. Such information is helpful in the understanding of the species evolution and in the selection of priority areas for the conservation of species.

New record and distribution extension of the rare Atlantic Forest endemic Abrawayaomys ruschii Cunha & Cruz, 1979 (Rodentia, Sigmodontinae)

We recorded three individuals of Abrawayaomys ruschii Cunha & Cruz, 1979 in Chapeco, Santa Catarina state, expanding the known geographic distribution of the species in approximately 370 km west from its nearest locality. It is the second record of the species in this type of physiognomy, characterized by the transition of Seasonal Deciduous and Mixed Ombrophilous forests. Additionally, this is the closest record, about 200 km east, from the recently described Abrawayaomys chebezi Pardinas, Teta & D’Elia, 2009.

Diversity of small land mammals in a subtropical Atlantic forest in the western region of the state of Santa Catarina, southern Brazil

Small land mammals possess features that significantly influence the dynamics of ecosystems and participate in various levels of the food web. In the Brazilian Atlantic Forest the richness of these animals is high, which makes them even more ecologically and numerically relevant in this environment. In this context, we investigated the species composition of small mammals in an unexplored area of southern Brazil, and compared the species composition of this area with other Atlantic Forest regions in order to understand how this community is related to others. The study area was located in an interior Atlantic forest formation, at a transition region between deciduous and Araucaria forests. Small mammals were captured at five collection points using pitfall traps. We compared the species composition found in our studied area with the composition of other 11 studies in different regions by a cluster analysis, and we investigated the presence of spatial autocorrelation between communities with a Mantel test. We recorded 779 individuals from 21 species of small rodents (15 species) and marsupials (six species) during the 13 months of the collection period. This richness was high compared to other studies conducted in the Atlantic Forest formations near to coastline and in interior forest formations. This may be a result of the conditions provided by this transition area (deciduous and Araucaria forests), where could be found elements of the both forests formations, which probably allows the establishment of small mammal species from both forest types. Despite differences in sampling effort of the studies, our results suggest that the interior forest formations may harbor a number of species comparable to the formations near the coast. The species composition of this area was similar to those found in other interior forest formations with the same phytophysiognomy characteristics and at nearby regions, and it was less similar to the distant formations located in southeastern and northeastern Brazil and nearby to the coastline. This can be a result of both the spatial autocorrelation (i.e. more nearby communities tend to have more similar species composition) and the differences of forest characteristics among regions.

Pleistocene climatic oscillations in Neotropical open areas: Refuge isolation in the rodent Oxymycterus nasutus endemic to grasslands

Pleistocene climatic oscillations favoured the expansion of grassland ecosystems and open vegetation landscapes throughout the Neotropics, and influenced the evolutionary history of species adapted to such environments. In this study, we sampled populations of the rodent Oxymycterus nasutus endemic to open areas in the Pampas and Atlantic Forest biomes to assess the tempo and mode of population divergence using an integrative approach, including coalescence theory, ecological niche models, and morphometry. Our results indicated that these O. nasutus populations exhibited high levels of genetic structure. Six major mtDNA clades were found, structuring these biomes into distinct groups. Estimates of their divergence times was indicated to be 0.571 myr. The high degree of genetic structure is reflected in the analyses of geometric morphometric; skull differences between lineages in the two ecoregions were detected. During the last glacial maximum, there was a strong increase in suitable abiotic conditions for O. nasutus. Distinct molecular markers revealed a population expansion over time, with a possible demographic retraction during the post-glacial period. Considering that all clades coalesce with the last interglacial maximum, our results indicated that reduction in suitable conditions during this period may have resulted in a possible vicariance associated with refuge isolation.