Renan Maestri

Patterns of Species Richness and Turnover for the South American Rodent Fauna

Understanding the spatial distribution of species sheds light on the group’s biogeographical history, offers clues to the drivers of diversity, and helps to guide conservation strategies. Here, we compile geographic range information for South America’s diverse rodents, whose 14 families comprise ~50% of the continent’s mammalian species. The South American rodent fauna is dominated by independent and temporally staggered radiations of caviomorph and sigmodontine groups. We mapped species richness and turnover of all rodents and the principal clades to identify the main predictors of diversity patterns. Species richness was highest in the Andes, with a secondary hotspot in Atlantic Forest and some regions of considerable richness in Amazonia. Differences in richness were evident between the caviomorphs and sigmodontines, the former showing the greatest richness in tropical forests whereas the latter show—and largely determine—the all-rodent pattern. Elevation was the main predictor of sigmodontine richness, whereas temperature was the principal variable correlated with richness of caviomorphs. Across clades, species turnover was highest along the Andes and was best explained by elevational relief. In South America, the effects of the familiar latitudinal gradient in species richness are mixed with a strong longitudinal effect, triggered by the importance of elevation and the position of the Andes. Both latitudinal and elevational effects help explain the complicated distribution of rodent diversity across the continent. The continent’s restricted-range species—those seemingly most vulnerable to localized disturbance—are mostly distributed along the Andes and in Atlantic Forest, with the greatest concentration in Ecuador. Both the Andes and Atlantic Forest are known hotspots for other faunal and floral components. Contrasting patterns of the older caviomorph and younger sigmodontine radiations underscore the interplay of both historical and ecological factors in determining present-day diversity patterns.

Geometric morphometrics meets metacommunity ecology: environment and lineage distribution affects spatial variation in shape

Patterns of univariate trait variation across metacommunities are widely explored, as are searches for their underlying causes. Surprisingly, patterns of multivariate shape remain unknown, and the search for drivers of functional traits of communities often neglect the biogeographical distribution of phylogenetic clades. Our aim was to investigate multivariate shape distribution across metacommunities and to determine the main environmental drivers of shape beyond/taking into account the phylogenetic distribution of lineages. We obtained mean skull and mandible shape for 228 species of Neotropical sigmodontine rodents through geometric morphometrics (GM), and then calculated mean shapes for 1° × 1° cells across the Neotropics based on the incidence of sigmodontines. We investigated the effects of lineage distribution on mean trait variation by using phylogenetic fuzzy weighting to calculate principal coordinates of phylogenetic structure (PCPS). Effects of environmental variables on shape variation incorporating phylogenetic composition were realized through redundancy analysis. We found that the different distributions of major lineages throughout the Neotropics were responsible for much of the mean shape variation. The association of landscape features with tribal groupings (Oryzomyini with Amazonia and Phyllotini and Abrotrichini with the Andes) were standouts. Environmental variables and lineage distribution explain the same (i.e. shared) portion of shape variation, suggesting phylogenetic niche conservatism at the metacommunity level. Seasonality in temperature and land cover were the best environmental predictors of mean shape: larger tympanic bullae, incisive foramina, and check teeth are all associated with highly seasonal and less vegetated areas. Our new approach of using GM shape across metacommunities was demonstrably useful in understanding large-scale biogeographical patterns of shape variation and identifying its underlying causes. The overlap between environmental variables and phylogenetic lineage distribution suggests that a process of niche conservatism is likely: the phenotype–environment correlation is mediated by the differential biogeographical distribution of the main clades.

Niche suitability affects development: skull asymmetry increases in less suitable areas.

For conservation purposes, it is important to take into account the suitability of a species to particular habitats; this information may predict the long-term survival of a species. In this sense, morphological measures of developmental stress, such as fluctuating asymmetry, can be proxies for an individual’s performance in different regions. In this study, we conducted tests to determine whether areas with different levels of suitability for a species (generated by ecological niche models) were congruent with morphological markers that reflect environmental stress and morphological variance. We generated a Maxent niche model and compared the suitability assessments of several areas with the skull morphology data (fluctuating asymmetry and morphological disparity) of populations of the Atlantic forest endemic to Brazil rodent Akodon cursor. Our analyses showed a significant negative relationship between suitability levels and fluctuating asymmetry levels, which indicates that in less suitable areas, the individuals experience numerous disturbances during skull ontogeny. We have not found an association between morphological variance and environmental suitability. As expected, these results suggest that in environments with a lower suitability, developmental stress is increased. Such information is helpful in the understanding of the species evolution and in the selection of priority areas for the conservation of species.

New record and distribution extension of the rare Atlantic Forest endemic Abrawayaomys ruschii Cunha & Cruz, 1979 (Rodentia, Sigmodontinae)

We recorded three individuals of Abrawayaomys ruschii Cunha & Cruz, 1979 in Chapeco, Santa Catarina state, expanding the known geographic distribution of the species in approximately 370 km west from its nearest locality. It is the second record of the species in this type of physiognomy, characterized by the transition of Seasonal Deciduous and Mixed Ombrophilous forests. Additionally, this is the closest record, about 200 km east, from the recently described Abrawayaomys chebezi Pardinas, Teta & D’Elia, 2009.

Diversity of small land mammals in a subtropical Atlantic forest in the western region of the state of Santa Catarina, southern Brazil

Small land mammals possess features that significantly influence the dynamics of ecosystems and participate in various levels of the food web. In the Brazilian Atlantic Forest the richness of these animals is high, which makes them even more ecologically and numerically relevant in this environment. In this context, we investigated the species composition of small mammals in an unexplored area of southern Brazil, and compared the species composition of this area with other Atlantic Forest regions in order to understand how this community is related to others. The study area was located in an interior Atlantic forest formation, at a transition region between deciduous and Araucaria forests. Small mammals were captured at five collection points using pitfall traps. We compared the species composition found in our studied area with the composition of other 11 studies in different regions by a cluster analysis, and we investigated the presence of spatial autocorrelation between communities with a Mantel test. We recorded 779 individuals from 21 species of small rodents (15 species) and marsupials (six species) during the 13 months of the collection period. This richness was high compared to other studies conducted in the Atlantic Forest formations near to coastline and in interior forest formations. This may be a result of the conditions provided by this transition area (deciduous and Araucaria forests), where could be found elements of the both forests formations, which probably allows the establishment of small mammal species from both forest types. Despite differences in sampling effort of the studies, our results suggest that the interior forest formations may harbor a number of species comparable to the formations near the coast. The species composition of this area was similar to those found in other interior forest formations with the same phytophysiognomy characteristics and at nearby regions, and it was less similar to the distant formations located in southeastern and northeastern Brazil and nearby to the coastline. This can be a result of both the spatial autocorrelation (i.e. more nearby communities tend to have more similar species composition) and the differences of forest characteristics among regions.

Pleistocene climatic oscillations in Neotropical open areas: Refuge isolation in the rodent Oxymycterus nasutus endemic to grasslands

Pleistocene climatic oscillations favoured the expansion of grassland ecosystems and open vegetation landscapes throughout the Neotropics, and influenced the evolutionary history of species adapted to such environments. In this study, we sampled populations of the rodent Oxymycterus nasutus endemic to open areas in the Pampas and Atlantic Forest biomes to assess the tempo and mode of population divergence using an integrative approach, including coalescence theory, ecological niche models, and morphometry. Our results indicated that these O. nasutus populations exhibited high levels of genetic structure. Six major mtDNA clades were found, structuring these biomes into distinct groups. Estimates of their divergence times was indicated to be 0.571 myr. The high degree of genetic structure is reflected in the analyses of geometric morphometric; skull differences between lineages in the two ecoregions were detected. During the last glacial maximum, there was a strong increase in suitable abiotic conditions for O. nasutus. Distinct molecular markers revealed a population expansion over time, with a possible demographic retraction during the post-glacial period. Considering that all clades coalesce with the last interglacial maximum, our results indicated that reduction in suitable conditions during this period may have resulted in a possible vicariance associated with refuge isolation.

Interspecific interactions may not influence home range size in subterranean rodents: a case study of two tuco-tuco species (Rodentia: Ctenomyidae)

Coexistence between species with similar niche requirements is often facilitated by displacement of morphological, behavioral, or physiological characteristics. Experiments comparing treatments with and without the presence of potential competitors are ideal for testing hypotheses of interspecific competition. Here, we investigate a fundamental aspect in the natural history of a species: the home range. We determined whether co-occurrence can influence the home range size of 2 subterranean rodent species, Ctenomys flamarioni and C. minutus. We evaluated home range size in populations of both species in allopatry and sympatry along the coastal plain of southern Brazil. Animals were radiotracked, and the home range size of each individual was estimated using grid cells and minimum convex polygon methods. We found no significant differences in home range size between sites or species, and the interaction was nonsignificant. We also found no relationship between home range size and body mass or sex. Our results suggest that co-occurrence may not influence home range size in these species, perhaps due to environmental adaptations that facilitate coexistence (e.g., microhabitat segregation and dietary modifications). Further, the characteristics of the sandy dune habitat may act as environmental filters, favoring similar home range sizes for both species.

Ontogenetic allometry in the foot size of Oligoryzomys flavescens (Waterhouse, 1837) (Rodentia, Sigmodontinae)

Ontogenetic allometry is the study of how the size or shape of certain structures changes over the course of an animals development. In this study, using Huxleys formula of allometric growth (1932), we assessed the changes in the rate of growth of the feet size of the sigmodontine rodent Oligoryzomys flavescens during its ontogeny and compared differences between males and females. We find evidence of a change of polarity during the ontogenetic development of the species, with the presence of positive allometry during pregnancy and negative allometry in adulthood. Moreover, we note the presence of sexual dimorphism in the size of the feet, in which males of the species have a higher rate of growth than females. This growth pattern is positively related to escape from predators in childhood in both sexes and, in adulthood, provides a higher encounter rate of females by males, due to the larger displacement of the latter. We suggest that both the forces of natural selection and sexual selection have acted to shape the evolution of foot size in this species.

HaploVectors: an integrative analytical tool for phylogeography

Phylogeographic approaches are commonly used to understand historical-biogeographic patterns in the distribution of haplotypes. However, the emphasis of most tools lies on describing spatial patterns of genetic variation and assess how large are haplotypic differences among populations. An evaluation of the relative influence of environmental factors compared to pure neutral process of haplotypic distribution - a question of great interest for molecular ecologists - is less investigated, in part because appropriate tools are lacking. Here, we introduce HaploVectors, a flexible tool that allows exploring phylogeographical patterns and discriminating biogeographic, neutral and environmental factors acting to shape genetic distribution across space. Haplovectors are variables that summarize the major gradients of haplotypic distribution across a set of localities and allow weighting haplotypic frequencies by the number of mutational steps using a fuzzy weighting approach. HaploVectors is presented as an R package for computing haplotypic eigenvectors and performing null model- based tests. Investigation of HaploVectors using empirical datasets showed that the method is useful to uncover hidden patterns of haplotypic distribution, not easily detected using traditional methods. Using a plant species as study case, we demonstrate by means of HaploVectors that, even though the distribution of plant haplotypes was associated with different biogeographic regions of the Brazilian Cerrado biome, such association was not mediated by evolutionary relationships among haplotypes. The applicability of HaploVectors is broad, ranging from the pure pattern exploration and discrimination of genetic populations, to a hypothesis-testing framework that uses null-models to understand the influence of environmental factors on haplotypic distribution.

Divergent genetic mechanisms lead to spiny hair in mammals

In humans, a single amino acid change (V370A) in the Ecdysoplasin A receptor (Edar) gene is associated with a unique hair phenotype in East Asian populations. Transgenic experiments in mouse show that this mutation enhances Edar signaling in vitro, which in turn alters multiple aspects of hair morphology. Here we tested whether this substitution contributes to the spiny hair observed in six families of rodents. We first measured hair traits, focusing on guard hairs and their physical properties, such as tension and deformation, and compared the morphology between spiny and non-spiny sister lineages. Two distinct hair morphologies were repeatedly observed in spiny rodent lineages: hairs with a grooved cross-section and a second near cylindrical form, which differ in their cross-section shape as well as their tensiometric properties. Next, we sequenced a portion of the Edar locus in these same species. Most species surveyed have the common amino acid valine at position 370, but the kangaroo rat and spiny pocket mouse have an isoleucine. We also found one additional amino acid variant: tree rats have a Leu422Val polymorphism. However, none of these variants are associated with changes in hair morphology. Together these data suggest that the specific Edar mutation associated with variation in human hair morphology does not play a role in modifying hairs in wild rodents, highlighting that different evolutionary pathways can produce similar spiny hair morphology.