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Dive into the research topics where Daniel Reid is active.

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Featured researches published by Daniel Reid.


Nature Communications | 2016

Age and structure of a model vapour-deposited glass

Daniel Reid; Ivan Lyubimov; M. D. Ediger; Juan J. de Pablo

Glass films prepared by a process of physical vapour deposition have been shown to have thermodynamic and kinetic stability comparable to those of ordinary glasses aged for thousands of years. A central question in the study of vapour-deposited glasses, particularly in light of new knowledge regarding anisotropy in these materials, is whether the ultra-stable glassy films formed by vapour deposition are ever equivalent to those obtained by liquid cooling. Here we present a computational study of vapour deposition for a two-dimensional glass forming liquid using a methodology, which closely mimics experiment. We find that for the model considered here, structures that arise in vapour-deposited materials are statistically identical to those observed in ordinary glasses, provided the two are compared at the same inherent structure energy. We also find that newly deposited hot molecules produce cascades of hot particles that propagate far into the film, possibly influencing the relaxation of the material.


Physical Chemistry Chemical Physics | 2016

Planarity and multiple components promote organic photovoltaic efficiency by improving electronic transport.

Matthew Goldey; Daniel Reid; Juan J. de Pablo; Giulia Galli

Establishing how the conformation of organic photovoltaic (OPV) polymers affects their electronic and transport properties is critical in order to determine design rules for new OPV materials and in particular to understand the performance enhancements recently reported for ternary blends. We report coupled classical and ab initio molecular dynamics simulations showing that polymer linkage twisting significantly reduces optical absorption efficiency, as well as hole transport rates in donor polymers. We predict that blends with components favoring planar geometries contribute to the enhancement of the overall efficiency of ternary OPVs. Furthermore, our electronic structure calculations for the PTB7-PID2-PC71BM system show that hole transfer rates are enhanced in ternary blends with respect to their binary counterpart. Finally, our results point at thermal disorder in the blend as a key reason responsible for device voltage losses and at the need to carry out electronic structure calculations at finite temperature to reliably compare with experiments.


Proceedings of the National Academy of Sciences of the United States of America | 2018

Auxetic metamaterials from disordered networks

Daniel Reid; Nidhi Pashine; Justin M Wozniak; Heinrich M. Jaeger; Andrea J. Liu; Sidney R. Nagel; Juan J. de Pablo

Significance Recent work indicates that selective pruning of disordered networks of nodes connected by bonds can generate materials with nontrivial mechanical properties, including auxetic networks having a negative Poisson’s ratio ν. Until now, auxetic networks created based on this strategy have not been successfully realized in experiment. Here a model that includes angle-bending forces and the experimental boundary conditions is introduced for pruning-based design of auxetic materials. By pruning the appropriate bonds, ν can be tuned to values approaching the lower mechanical limit of −1, and the corresponding laboratory networks exhibit good agreement with model predictions. Optimization algorithms are then used to show that highly auxetic materials can be engineered from inhomogeneous bonds and nodes that exhibit distinct mechanical characteristics. Recent theoretical work suggests that systematic pruning of disordered networks consisting of nodes connected by springs can lead to materials that exhibit a host of unusual mechanical properties. In particular, global properties such as Poisson’s ratio or local responses related to deformation can be precisely altered. Tunable mechanical responses would be useful in areas ranging from impact mitigation to robotics and, more generally, for creation of metamaterials with engineered properties. However, experimental attempts to create auxetic materials based on pruning-based theoretical ideas have not been successful. Here we introduce a more realistic model of the networks, which incorporates angle-bending forces and the appropriate experimental boundary conditions. A sequential pruning strategy of select bonds in this model is then devised and implemented that enables engineering of specific mechanical behaviors upon deformation, both in the linear and in the nonlinear regimes. In particular, it is shown that Poisson’s ratio can be tuned to arbitrary values. The model and concepts discussed here are validated by preparing physical realizations of the networks designed in this manner, which are produced by laser cutting 2D sheets and are found to behave as predicted. Furthermore, by relying on optimization algorithms, we exploit the networks’ susceptibility to tuning to design networks that possess a distribution of stiffer and more compliant bonds and whose auxetic behavior is even greater than that of homogeneous networks. Taken together, the findings reported here serve to establish that pruned networks represent a promising platform for the creation of unique mechanical metamaterials.


Journal of Chemical Physics | 2018

SSAGES: Software Suite for Advanced General Ensemble Simulations

Hythem Sidky; Yamil J. Colón; Julian Helfferich; Benjamin J. Sikora; Cody Bezik; Weiwei Chu; Federico Giberti; Ashley Guo; Xikai Jiang; Joshua Lequieu; Jiyuan Li; Joshua Moller; Michael J. Quevillon; Mohammad Rahimi; Hadi Ramezani-Dakhel; Vikramjit S. Rathee; Daniel Reid; Emre Sevgen; Vikram Thapar; Michael A. Webb; Jonathan K. Whitmer; Juan J. de Pablo

Molecular simulation has emerged as an essential tool for modern-day research, but obtaining proper results and making reliable conclusions from simulations requires adequate sampling of the system under consideration. To this end, a variety of methods exist in the literature that can enhance sampling considerably, and increasingly sophisticated, effective algorithms continue to be developed at a rapid pace. Implementation of these techniques, however, can be challenging for experts and non-experts alike. There is a clear need for software that provides rapid, reliable, and easy access to a wide range of advanced sampling methods and that facilitates implementation of new techniques as they emerge. Here we present SSAGES, a publicly available Software Suite for Advanced General Ensemble Simulations designed to interface with multiple widely used molecular dynamics simulations packages. SSAGES allows facile application of a variety of enhanced sampling techniques-including adaptive biasing force, string methods, and forward flux sampling-that extract meaningful free energy and transition path data from all-atom and coarse-grained simulations. A noteworthy feature of SSAGES is a user-friendly framework that facilitates further development and implementation of new methods and collective variables. In this work, the use of SSAGES is illustrated in the context of simple representative applications involving distinct methods and different collective variables that are available in the current release of the suite. The code may be found at: https://github.com/MICCoM/SSAGES-public.


Journal of Physical Chemistry Letters | 2018

Aggregation and Solubility of a Model Conjugated Donor-Acceptor Polymer

Daniel Reid; Nicholas E. Jackson; Alexander J. Bourque; Chad R. Snyder; Ronald L. Jones; Juan J. de Pablo

In conjugated polymers, solution-phase structure and aggregation exert a strong influence on device morphology and performance, making understanding solubility crucial for rational design. Using atomistic molecular dynamics (MD) and free-energy sampling algorithms, we examine the aggregation and solubility of the polymer PTB7, studying how side-chain structure can be modified to control aggregation. We demonstrate that free-energy sampling can be used to effectively screen polymer solubility in a variety of solvents but that solubility parameters derived from MD are not predictive. We then study the aggregation of variants of PTB7 including those with linear (octyl), branched (2-ethylhexyl), and cleaved (methyl) side chains, in a selection of explicit solvents and additives. Energetic analysis demonstrates that while side chains do disrupt polymer backbone stacking, solvent exclusion is a critical factor controlling polymer solubility.


Soft Matter | 2016

Inherent structure energy is a good indicator of molecular mobility in glasses

Julian Helfferich; Ivan Lyubimov; Daniel Reid; Juan J. de Pablo


Physical Review Materials | 2018

Low-temperature anomalies of a vapor deposited glass

B. Seoane; Daniel Reid; Juan J. de Pablo; Francesco Zamponi


Bulletin of the American Physical Society | 2018

Pruning bright bonds to engineer smart networks

Nidhi Pashine; Daniel Hexner; Jason W. Rocks; Daniel Reid; Irmgard Bischofberger; Carl P. Goodrich; Justin M. Wozniak; Heinrich M. Jaeger; Andrea J. Liu; Juan J. de Pablo; Sidney R. Nagel


APS March Meeting 2018 | 2018

Mapping Electronic Structure to Coarse-Grained Degrees of Freedom via Supervised Machine Learning

Nicholas E. Jackson; Alec S. Bowen; Daniel Reid; Venkatram Vishwanath; Juan J. de Pablo


Bulletin of the American Physical Society | 2017

Auxetic metamaterials with additive manufacturing from jammed networks

Daniel Reid; Nidhi Pashine; Justin M. Wozniak; Sidney R. Nagel; Juan J. de Pablo

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Andrea J. Liu

University of Pennsylvania

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Jason W. Rocks

University of Pennsylvania

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Justin M. Wozniak

Argonne National Laboratory

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