Demetrios Gatziolis

3D Tree Dimensionality Assessment Using Photogrammetry and Small Unmanned Aerial Vehicles

Detailed, precise, three-dimensional (3D) representations of individual trees are a prerequisite for an accurate assessment of tree competition, growth, and morphological plasticity. Until recently, our ability to measure the dimensionality, spatial arrangement, shape of trees, and shape of tree components with precision has been constrained by technological and logistical limitations and cost. Traditional methods of forest biometrics provide only partial measurements and are labor intensive. Active remote technologies such as LiDAR operated from airborne platforms provide only partial crown reconstructions. The use of terrestrial LiDAR is laborious, has portability limitations and high cost. In this work we capitalized on recent improvements in the capabilities and availability of small unmanned aerial vehicles (UAVs), light and inexpensive cameras, and developed an affordable method for obtaining precise and comprehensive 3D models of trees and small groups of trees. The method employs slow-moving UAVs that acquire images along predefined trajectories near and around targeted trees, and computer vision-based approaches that process the images to obtain detailed tree reconstructions. After we confirmed the potential of the methodology via simulation we evaluated several UAV platforms, strategies for image acquisition, and image processing algorithms. We present an original, step-by-step workflow which utilizes open source programs and original software. We anticipate that future development and applications of our method will improve our understanding of forest self-organization emerging from the competition among trees, and will lead to a refined generation of individual-tree-based forest models.

Is tree loss associated with cardiovascular-disease risk in the Women's Health Initiative? A natural experiment.

Data from the Womens Health Initiative were used to quantify the relationship between the loss of trees to an invasive forest pest-the emerald ash borer-and cardiovascular disease. We estimated a semi-parametric Cox proportional hazards model of time to cardiovascular disease, adjusting for confounders. We defined the incidence of cardiovascular disease as acute myocardial infarction requiring overnight hospitalization, silent MI determined from serial electrocardiograms, ischemic or hemorrhagic stroke, or death from coronary heart disease. Women living in a county infested with emerald ash borer had an increased risk of cardiovascular disease (HR=1.25, 95% CI: 1.20-1.31).

Using an epiphytic moss to identify previously unknown sources of atmospheric cadmium pollution.

Urban networks of air-quality monitors are often too widely spaced to identify sources of air pollutants, especially if they do not disperse far from emission sources. The objectives of this study were to test the use of moss bio-indicators to develop a fine-scale map of atmospherically-derived cadmium and to identify the sources of cadmium in a complex urban setting. We collected 346 samples of the moss Orthotrichum lyellii from deciduous trees in December, 2013 using a modified randomized grid-based sampling strategy across Portland, Oregon. We estimated a spatial linear model of moss cadmium levels and predicted cadmium on a 50m grid across the city. Cadmium levels in moss were positively correlated with proximity to two stained-glass manufacturers, proximity to the Oregon-Washington border, and percent industrial land in a 500m buffer, and negatively correlated with percent residential land in a 500m buffer. The maps showed very high concentrations of cadmium around the two stained-glass manufacturers, neither of which were known to environmental regulators as cadmium emitters. In addition, in response to our findings, the Oregon Department of Environmental Quality placed an instrumental monitor 120m from the larger stained-glass manufacturer in October, 2015. The monthly average atmospheric cadmium concentration was 29.4ng/m(3), which is 49 times higher than Oregons benchmark of 0.6ng/m(3), and high enough to pose a health risk from even short-term exposure. Both stained-glass manufacturers voluntarily stopped using cadmium after the monitoring results were made public, and the monthly average cadmium levels precipitously dropped to 1.1ng/m(3) for stained-glass manufacturer #1 and 0.67ng/m(3) for stained-glass manufacturer #2.

Vegetation diversity protects against childhood asthma: results from a large New Zealand birth cohort

We assessed the association between the natural environment and asthma in 49,956 New Zealand children born in 1998 and followed up until 2016 using routinely collected data. Children who lived in greener areas, as measured by the normalized difference vegetation index, were less likely to be asthmatic: a 1 s.d. increase in normalized difference vegetation index was associated with a 6.0% (95% CI 1.9–9.9%) lower risk of asthma. Vegetation diversity was also protective: a 1 s.d. increase in the number of natural land-cover types in a child’s residential meshblock was associated with a 6.7% (95% CI 1.5–11.5%) lower risk. However, not all land-cover types were protective. A 1 s.d. increase in the area covered by gorse (Ulex europaeus) or exotic conifers, both non-native, low-biodiversity land-cover types, was associated with a 3.2% (95% CI 0.0–6.0%) and 4.2% (95% CI 0.9–7.5%) increased risk of asthma, respectively. The results suggest that exposure to greenness and vegetation diversity may be protective of asthma.Study over 18 years of nearly 50,000 children in New Zealand, measuring the impact of vegetation diversity on the incidence and prevalence of childhood asthma. An increase in the diversity of vegetation in a child’s residential neighbourhood is associated with a lower risk of developing asthma.

Intercomparison of photogrammetry software for three-dimensional vegetation modelling

Photogrammetry-based three-dimensional reconstruction of objects is becoming increasingly appealing in research areas unrelated to computer vision. It has the potential to facilitate the assessment of forest inventory-related parameters by enabling or expediting resource measurements in the field. We hereby compare several implementations of photogrammetric algorithms (CMVS/PMVS, CMPMVS, MVE, OpenMVS, SURE and Agisoft PhotoScan) with respect to their performance in vegetation assessment. The evaluation is based on (i) a virtual scene where the precise location and dimensionality of objects is known a priori and is thus conducive to a quantitative comparison and (ii) using series of in situ acquired photographs of vegetation with overlapping field of view where the photogrammetric outcomes are compared qualitatively. Performance is quantified by computing receiver operating characteristic curves that summarize the type-I and type-II errors between the reference and reconstructed tree models. Similar artefacts are observed in synthetic- and in situ-based reconstructions.

Correction to: ‘Intercomparison of photogrammetry software for three-dimensional vegetation modelling’

[This corrects the article DOI: 10.1098/rsos.172192.].

Augmentation of Traditional Forest Inventory and Airborne Laser Scanning with Unmanned Aerial Systems and Photogrammetry for Forest Monitoring

Forest inventories are constrained by resource-intensive fieldwork, while unmanned aerial systems (UASs) offer rapid, reliable, and replicable data collection and processing. This research leverages advancements in photogrammetry and market sensors and platforms to incorporate a UAS-based approach into existing forestry monitoring schemes. Digital imagery from a UAS was collected, photogrammetrically processed, and compared to in situ and aerial laser scanning (ALS)-derived plot tree counts and heights on a subsample of national forest plots in Oregon. UASand ALS-estimated tree counts agreed with each other (r2 = 0.96) and with field data (ALS r2 = 0.93, UAS r2 = 0.84). UAS photogrammetry also reasonably approximated mean plot tree height achieved by the field inventory (r2 = 0.82, RMSE = 2.92 m) and by ALS (r2 = 0.97, RMSE = 1.04 m). The use of both nadir-oriented and oblique UAS imagery as well as the availability of ALS-derived terrain descriptions likely sustain a robust performance of our approach across classes of canopy cover and tree height. It is possible to draw similar conclusions from any of the methods, suggesting that the efficient and responsive UAS method can enhance field measurement and ALS in longitudinal inventories. Additionally, advancing UAS technology and photogrammetry allows diverse users access to forest data and integrates updated methodologies with traditional forest monitoring.

The Relationship Between the Natural Environment and Individual-Level Academic Performance in Portland, Oregon

We tested the hypothesis that exposure to the natural environment is associated with improved academic performance. Specifically, we examined the association between individual-level standardized math and reading test scores and exposure to the natural environment using data from Portland Public Schools (17,918 students attending 83 schools for the math model and 19,459 students attending 90 schools for the reading model). We found that a 1-SD increase in tree cover within 200 m of a child’s home was associated with moving from the 50th percentile to the 51st percentile on math tests. A 1-SD increase in tree cover within 100 m of a child’s school was associated with moving from the 50th percentile to the 56th percentile on reading tests. Finally, a 1-SD increase in road density within 100 m of a child’s home was associated with moving from the 50th percentile to the 47th percentile on reading tests.