Dennis D. Fernandes
University of Toronto
Network
Latest external collaboration on country level. Dive into details by clicking on the dots.
Publication
Featured researches published by Dennis D. Fernandes.
Langmuir | 2016
Donald A. Fernandes; Dennis D. Fernandes; Yuchong Li; Yan Wang; Zhenfu Zhang; Dérick Rousseau; Claudiu C. Gradinaru; Michael C. Kolios
Nanotechnology provides a promising platform for drug-delivery in medicine. Nanostructured materials can be designed with desired superparamagnetic or fluorescent properties in conjunction with biochemically functionalized moieties (i.e., antibodies, peptides, and small molecules) to actively bind to target sites. These multifunctional properties make them suitable agents for multimodal imaging, diagnosis, and therapy. Perfluorohexane nanoemulsions (PFH-NEs) are novel drug-delivery vehicles and contrast agents for ultrasound and photoacoustic imaging of cancer in vivo, offering higher spatial resolution and deeper penetration of tissue when compared to conventional optical techniques. Compared to other theranostic agents, our PFH-NEs are one of the smallest of their kind (<100 nm), exhibit minimal aggregation, long-term stability at physiological conditions, and provide a noninvasive cancer imaging and therapy alternative for patients. Here, we show, using high-resolution imaging and correlative techniques, that our PFH-NEs, when in tandem with silica-coated gold nanoparticles (scAuNPs), can be used as a drug-loaded therapeutic via endocytosis and as a multimodal imaging agent for photoacoustic, ultrasound, and fluorescence imaging of tumor growth.
Journal of the American Chemical Society | 2016
Rabindra V. Shivnaraine; Dennis D. Fernandes; Huiqiao Ji; Yuchong Li; Brendan Kelly; Zhenfu Zhang; Yi Rang Han; Fei Huang; Krishana S. Sankar; David N. Dubins; Jonathan V. Rocheleau; James W. Wells; Claudiu C. Gradinaru
G protein-coupled receptors constitute the largest family of transmembrane signaling proteins and the largest pool of drug targets, yet their mechanism of action remains obscure. That uncertainty relates to unresolved questions regarding the supramolecular nature of the signaling complex formed by receptor and G protein. We therefore have characterized the oligomeric status of eGFP-tagged M2 muscarinic receptor (M2R) and Gi1 by single-particle photobleaching of immobilized complexes. The method was calibrated with multiplexed controls comprising 1-4 copies of fused eGFP. The photobleaching patterns of eGFP-M2R were indicative of a tetramer and unaffected by muscarinic ligands; those of eGFP-Gi1 were indicative of a hexamer and unaffected by GTPγS. A complex of M2R and Gi1 was tetrameric in both, and activation by a full agonist plus GTPγS reduced the oligomeric size of Gi1 without affecting that of the receptor. A similar reduction was observed upon activation of eGFP-Gαi1 by the receptor-mimic mastoparan plus GTPγS, and constitutively active eGFP-Gαi1 was predominantly dimeric. The oligomeric nature of Gi1 in live CHO cells was demonstrated by means of Förster resonance energy transfer and dual-color fluorescence correlation spectroscopy in studies with eGFP- and mCherry-labeled Gαi1; stochastic FRET was ruled out by means of non-interacting pairs. These results suggest that the complex between M2R and holo-Gi1 is an octamer comprising four copies of each, and that activation is accompanied by a decrease in the oligomeric size of Gi1. The structural feasibility of such a complex was demonstrated in molecular dynamics simulations.
Proceedings of SPIE | 2015
Donald A. Fernandes; Dennis D. Fernandes; Yan J. Wang; Yuchong Li; Claudiu C. Gradinaru; Dérick Rousseau; Michael C. Kolios
There is currently interest in the development of nanoemulsions as imaging and therapeutic agents, particularly perfluorohexane (PFH) droplets, whose amphiphilic shell protects drugs against physico-chemical and enzymatic degradation. When delivered to their target sites, these perfluorocarbon (PFC) droplets can vaporize upon laser excitation, efficiently releasing their drug payload and/or imaging tracers. Due to the optical properties of gold, coupling PFC droplets with gold nanoparticles significantly reduces the energy required for vaporization. In this work, nanoemulsions with a PFC core and Zonyl FSP surfactant shell were produced using sonication. Droplets were characterized in terms of size and morphology using high resolution fluorescence microscopy (i.e. total internal reflection fluorescence microscopy, TIRFM), fluorescence correlation spectroscopy (FCS), transmission electron microscopy (TEM), and light scattering techniques (i.e. dynamic light scattering, DLS). The ability of PFC droplets to vaporize was demonstrated using optical light microscopy.
Scientific Reports | 2017
Dennis D. Fernandes; Jasbir Bamrah; Senthilkumar Kailasam; Gregory-Neal Gomes; Yuchong Li; Hans-Joachim Wieden; Claudiu C. Gradinaru
In recent years, new labelling strategies have been developed that involve the genetic insertion of small amino-acid sequences for specific attachment of small organic fluorophores. Here, we focus on the tetracysteine FCM motif (FLNCCPGCCMEP), which binds to fluorescein arsenical hairpin (FlAsH), and the ybbR motif (TVLDSLEFIASKLA) which binds fluorophores conjugated to Coenzyme A (CoA) via a phosphoryl transfer reaction. We designed a peptide containing both motifs for orthogonal labelling with FlAsH and Alexa647 (AF647). Molecular dynamics simulations showed that both motifs remain solvent-accessible for labelling reactions. Fluorescence spectra, correlation spectroscopy and anisotropy decay were used to characterize labelling and to obtain photophysical parameters of free and peptide-bound FlAsH. The data demonstrates that FlAsH is a viable probe for single-molecule studies. Single-molecule imaging confirmed dual labeling of the peptide with FlAsH and AF647. Multiparameter single-molecule Förster Resonance Energy Transfer (smFRET) measurements were performed on freely diffusing peptides in solution. The smFRET histogram showed different peaks corresponding to different backbone and dye orientations, in agreement with the molecular dynamics simulations. The tandem of fluorophores and the labelling strategy described here are a promising alternative to bulky fusion fluorescent proteins for smFRET and single-molecule tracking studies of membrane proteins.
Biophysical Journal | 2018
Dennis D. Fernandes; Jasbir Bamrah; Senthilkumar Kailasam; Gregory-Neal Gomes; Yuchong Li; Hans-Joachim Wieden; Claudiu C. Gradinaru
Biophysical Journal | 2017
Dennis D. Fernandes; Libin Ye; Yuchong Li; Zhenfu Zhang; Gregory-Neal Gomes; R. Scott Prosser; Claudiu C. Gradinaru
Biophysical Journal | 2017
Claudiu C. Gradinaru; Dennis D. Fernandes; Rabindra V. Shivnaraine; James W. Wells
Biophysical Journal | 2016
Dennis D. Fernandes; Rabindra V. Shivnaraine; Yuchong Li; Ji Huiqiao; Zhenfu Zhang; Brendan Kelly; Nellie Han; Fei Huang; Krishana S. Sankar; Jonathon V. Rocheleau; James W. Wells; Claudiu C. Gradinaru
Biophysical Journal | 2016
Donald A. Fernandes; Dennis D. Fernandes; Claudiu C. Gradinaru; Michael C. Kolios
Biophysical Journal | 2015
Donald A. Fernandes; Dennis D. Fernandes; Yan J. Wang; Yuchong Li; Claudiu C. Gradinaru; Dérick Rousseau; Michael C. Kolios