Dianne L. McLean

Similarities between Line Fishing and Baited Stereo-Video Estimations of Length-Frequency: Novel Application of Kernel Density Estimates

Age structure data is essential for single species stock assessments but length-frequency data can provide complementary information. In south-western Australia, the majority of these data for exploited species are derived from line caught fish. However, baited remote underwater stereo-video systems (stereo-BRUVS) surveys have also been found to provide accurate length measurements. Given that line fishing tends to be biased towards larger fish, we predicted that, stereo-BRUVS would yield length-frequency data with a smaller mean length and skewed towards smaller fish than that collected by fisheries-independent line fishing. To assess the biases and selectivity of stereo-BRUVS and line fishing we compared the length-frequencies obtained for three commonly fished species, using a novel application of the Kernel Density Estimate (KDE) method and the established Kolmogorov–Smirnov (KS) test. The shape of the length-frequency distribution obtained for the labrid Choerodon rubescens by stereo-BRUVS and line fishing did not differ significantly, but, as predicted, the mean length estimated from stereo-BRUVS was 17% smaller. Contrary to our predictions, the mean length and shape of the length-frequency distribution for the epinephelid Epinephelides armatus did not differ significantly between line fishing and stereo-BRUVS. For the sparid Pagrus auratus, the length frequency distribution derived from the stereo-BRUVS method was bi-modal, while that from line fishing was uni-modal. However, the location of the first modal length class for P. auratus observed by each sampling method was similar. No differences were found between the results of the KS and KDE tests, however, KDE provided a data-driven method for approximating length-frequency data to a probability function and a useful way of describing and testing any differences between length-frequency samples. This study found the overall size selectivity of line fishing and stereo-BRUVS were unexpectedly similar.

Response of diurnal and nocturnal coral reef fish to protection from fishing: an assessment using baited remote underwater video

Diel variation is known to alter the composition and structure of reef fish assemblages. What is unknown is how nocturnal fish assemblages respond to closed fishery area management. Diurnal and nocturnal reef fish assemblages at the Houtman Abrolhos Islands, Western Australia, were studied using baited remote underwater stereo-video systems (stereo-BRUVs). Surveys were conducted during the day and at night (using blue illumination) from three sites inside and three sites outside a closed fishery area (CFA). The relative abundance of 116 fish species from 41 families was recorded. Significant changes were observed in fish assemblage structure from day to night (driven by high dispersion at night) and in areas open versus closed to fishing (driven by increased abundance within the CFA). The effect of protection from fishing was consistent for both diurnal and nocturnal fish assemblages. Closer examination of six targeted fish species showed that their response to diel changes and the absence of fishing pressure varied from species to species. The targeted fishes Pagrus auratus and Glaucosoma hebraicum were sampled during the day and at night with both species responding positively to protection from fishing. Results suggest that the inclusion of diurnal and nocturnal fish assemblage data will provide an improved ability to assess the effectiveness of closed fishery area management.

Coastal fish assemblages reflect geological and oceanographic gradients within an Australian zootone

Distributions of mobile animals have been shown to be heavily influenced by habitat and climate. We address the historical and contemporary context of fish habitats within a major zootone: the Recherche Archipelago, southern western Australia. Baited remote underwater video systems were set in nine habitat types within three regions to determine the species diversity and relative abundance of bony fishes, sharks and rays. Constrained ordinations and multivariate prediction and regression trees were used to examine the effects of gradients in longitude, depth, distance from islands and coast, and epibenthic habitat on fish assemblage composition. A total of 90 species from 43 families were recorded from a wide range of functional groups. Ordination accounted for 19% of the variation in the assemblage composition when constrained by spatial and epibenthic covariates, and identified redundancy in the use of distance from the nearest emergent island as a predictor. A spatial hierarchy of fourteen fish assemblages was identified using multivariate prediction and regression trees, with the primary split between assemblages on macroalgal reefs, and those on bare or sandy habitats supporting seagrass beds. The characterisation of indicator species for assemblages within the hierarchy revealed important faunal break in fish assemblages at 122.30 East at Cape Le Grand and subtle niche partitioning amongst species within the labrids and monacanthids. For example, some species of monacanthids were habitat specialists and predominantly found on seagrass (Acanthaluteres vittiger, Scobinichthys granulatus), reef (Meuschenia galii, Meuschenia hippocrepis) or sand habitats (Nelusetta ayraudi). Predatory fish that consume molluscs, crustaceans and cephalopods were dominant with evidence of habitat generalisation in reef species to cope with local disturbances by wave action. Niche separation within major genera, and a sub-regional faunal break, indicate future zootone mapping should recognise both cross-shelf and longshore environmental gradients.

A novel stereo-video method to investigate fish–habitat relationships

Habitat complexity is known to influence the structure of fish assemblages. A number of techniques have previously been used to measure complexity, including quantitative in-situ methods, that can be time consuming and labour intensive, and more rapid semi-quantitative visual scoring methods. This study investigated the utility of a novel method for estimating complexity, whereby habitat height was measured using stereo photogrammetry from diver operated stereo-video, traditionally used to sample fish assemblages. This ‘stereo-height’ method was compared to established in-situ and visual scoring techniques and found to produce similar estimates of complexity. To determine how relevant the proposed method is for assessing ecological relationships, it was then used in conjunction with visual scoring of relief and point-intercept samples of benthic composition to model fish-habitat associations in the Pilbara region of Western Australia. Visual scores of relief were marginally stronger predictors of fish assemblage parameters and functional groups than the stereo-height measurements, providing support for the visual scoring approach. The only exception was for corallivorous fishes, which were more strongly correlated with stereo-height measurements. This study has presented a method for assessing habitat complexity using video imagery that is both comparable to traditional in-situ techniques and useful for investigating fish-habitat relationships. We suggest that future studies interested in collecting habitat complexity data from new or existing stereo-video samples use both the stereo-height and visual scoring methods presented here. Together these methods enable studies to rapidly and effectively assess fish-habitat relationships across a range of habitats without the need for in-situ methods or solely relying on field observers trained in visual scoring techniques. This article is protected by copyright. All rights reserved.

Shark depredation in commercial and recreational fisheries

Shark depredation, where a shark partially or completely consumes an animal caught by fishing gear before it can be retrieved to the fishing vessel, occurs in commercial and recreational fisheries worldwide, causing a range of negative biological and economic impacts. Despite this, it remains relatively understudied compared to other fisheries issues. This is the first review of the literature relating to shark depredation, which also includes an overview of the potential mechanisms underlying its occurrence and options for mitigation. Furthermore, this review highlights key research gaps that remain to be investigated, thereby providing impetus for future research. In total, 61 studies have been published between 1955 and 2018, which include information on shark depredation. These studies recorded quantitative rates of depredation between 0.9 and 26% in commercial and recreational fisheries and during research fishing, identified 27 shark species from seven families that were responsible for depredation and discussed potential factors influencing its occurrence. Information from research into bycatch mitigation and the testing of shark deterrent approaches and technologies is also presented, in the context of applying these approaches to the reduction of shark depredation. This review presents an holistic overview of shark depredation in fisheries globally and, in doing so, provides a central resource for fisheries researchers and managers focusing on this topic to stimulate further collaborative research on this important fisheries issue.

Understanding the Global Scientific Value of Industry ROV Data, to Quantify Marine Ecology and Guide Offshore Decommissioning Strategies

This paper describes the potential global scientific value of video and other data collected by Remotely Operated Vehicles (ROVs). ROVs are used worldwide, primarily by the offshore oil and gas industry, to monitor the integrity of subsea infrastructure and, in doing so, collect terabytes of video and in situ physical data from inaccessible regions and poorly understood marine environments. The paper begins by describing how recent ROV surveys for projects in Australia have gained a new dimension by involving marine scientists in their interpretation. A previously unrecognised influence of marine life on oil and gas pipelines was uncovered, triggering new collaborations between industry and marine science. This new collaboration prompted a team of international engineers and marine scientists to gather together with West Australian based members of the oil and gas sector and ROV operators, to examine the global scientific value of ROV-collected data. If made available for research, these data have immense value for science to quantify the marine ecology and assist good stewardship of this environment by industry. It was found that most ROV operations are conducted by industry in a way that fulfils immediate industry requirements but which can confound scientific interpretation of the data. For example, there is variation in video resolution, ROV speed, distance above substrate and time (e.g. both seasonal and time of day), and these variations can limit the quantitative conclusions that can be drawn about marine ecology. We examined potential cost-effective, simple enhancements to standard ROV hardware and operational procedures that will increase the value of future industrial ROV operational data, without disrupting the primary focus of these operations. The ecological value of existing ROV data represents an immense and under-utilized resource with worldwide coverage. We describe how ROVs can unravel the mysteries of our oceans, yield scientific discoveries, and provide examples of how these data can allow quantification of the ecological value of