Do-Jin Lee

In vitro induction of tetraploids in an interspecific hybrid of Calanthe (Calanthe discolor × Calanthe sieboldii) through colchicine and oryzalin treatments

Tetraploids were successfully produced from diploid seeds obtained through interspecific crossing between Calanthe discolor and Calanthe sieboldii by treating with colchicine or oryzalin. Colchicine was tested at concentrations of 0.05 and 0.1xa0% for 0, 3, or 7xa0days and oryzalin was tested at a concentration of 0.003xa0% for 1, 2, 4, and 7xa0days, and the ploidy of the seedlings was determined by flow cytometry. Tetraploids (4×) were obtained from the interspecific hybrid seeds treated with all colchicine and oryzalin concentrations. The most efficient condition for inducing tetraploids seemed to be treated with 0.003xa0% oryzalin for 1 or 2xa0days. Cytological and morphological evidence confirmed the results of flow cytometric analysis. The stomatal density and sizes of the tetraploid plants were significantly higher and larger than those of the diploid plants. Differences in leaf shape were found between the tetraploid and diploid plants under the same growing conditions: the leaves of the diploids were elongated and those of the tetraploids were round.

Genome-Wide Identification, Characterization and Expression Profiling of ADF Family Genes in Solanum lycopersicum L.

The actin depolymerizing factor (ADF) proteins have growth, development, defense-related and growth regulatory functions in plants. The present study used genome-wide analysis to investigate ADF family genes in tomato. Eleven tomato ADF genes were identified and differential expression patterns were found in different organs. SlADF6 was preferentially expressed in roots, suggesting its function in root development. SlADF1, SlADF3 and SlADF10 were predominately expressed in the flowers compared to the other organs and specifically in the stamen compared to other flower parts, indicating their potential roles in pollen development. The comparatively higher expression of SlADF3 and SlADF11 at early fruit developmental stages might implicate them in determining final fruit size. SlADF5 and SlADF8 had relatively higher levels of expression five days after the breaker stage of fruit development, suggesting their possible role in fruit ripening. Notably, six genes were induced by cold and heat, seven by drought, five by NaCl, and four each by abscisic acid (ABA), jasmonic acid (JA) and wounding treatments. The differential expression patterns of the SlADF genes under different types of stresses suggested their function in stress tolerance in tomato plants. Our results will be helpful for the functional characterization of ADF genes during organ and fruit development of tomato under different stresses.

Photo-catalytic destruction of ethylene using microwave discharge electrodeless lamp

A double tube type microwave discharge electrodeless lamp was employed to investigate the photo-catalytic decomposition of ethylene gas, an important VOC species. The anatase TiO2 film photo-catalyst balls prepared by a low pressure metal organic chemical vapor deposition method were used. In addition, the advantages of microwave/UV/TiO2 photo-catalysts hybrid process were analyzed. The removal performance was examined under different conditions with different initial ethylene concentrations, gas residence times and oxygen concentrations. At all microwave powers tested, UV-C exhibited much larger irradiance than UV-A and UV-B. The degradation efficiency of ethylene increased with increasing microwave intensity, with decreasing inlet concentration, and with decreasing reaction gas flow rate. Taking the energy cost into account, residence time should be determined considering inlet concentration, volume of degradation, capacity of devices, and admitted costs. Microwave intensity was shown to be a critical operation variable for the photo-catalytic degradation of ethylene, required to be determined depending on initial ethylene concentration.

Genome-wide identification, characterization and expression profiling of LIM family genes in Solanum lycopersicum L.

LIM domain proteins, some of which have been shown to be actin binding proteins, are involved in various developmental activities and cellular processes in plants. To date, the molecular defense-related functions of LIM family genes have not been investigated in any solanaceous vegetable crop species. In this study, we identified 15 LIM family genes in tomato (Solanum lycopersicum L.) through genome-wide analysis and performed expression profiling in different organs of tomato, including fruits at six different developmental stages. We also performed expression profiling of selected tomato LIM genes in plants under ABA, drought, cold, NaCl and heat stress treatment. The encoded proteins of the 15 tomato LIM genes were classified into two main groups, i.e., proteins similar to cysteine-rich proteins and plant-specific DAR proteins, based on differences in functional domains and variability in their C-terminal regions. The DAR proteins contain a so far poorly characterized zinc-finger-like motif that we propose to call DAR-ZF. Six of the 15 LIM genes were expressed only in flowers, indicating that they play flower-specific roles in plants. The other nine genes were expressed in all organs and at various stages of fruit development. SlβLIM1b was expressed relatively highly at the later stage of fruit development, but three other genes, SlWLIM2a, SlDAR2 and SlDAR4, were expressed at the early stage of fruit development. Seven genes were induced by ABA, five by cold, seven by drought, eight by NaCl and seven by heat treatment respectively, indicating their possible roles in abiotic stress tolerance. Our results will be useful for functional analysis of LIM genes during fruit development in tomato plants under different abiotic stresses.

Effect of ultra-fine gold particle addition to metal oxides in ethylene oxidation

Oxidation of ethylene was carried out over alumina-supported metal oxide catalysts and highly dispersed gold catalysts, respectively, under atmospheric pressure. The ethylene was completely oxidized to produce carbon dioxide and water with both metal oxide and gold catalysts. The activity of gold catalyst prepared by deposition method was much higher than that of supported metal oxide catalysts. Ultra-fine gold particles on Co3O4 were more active than on Al2O3. Fe2O3/Al2O3 and MnO2/Al2O3 catalysts were more active than MoO3/Al2O3 catalyst. The activity of the supported metal oxide catalysts was greatly enhanced by addition of gold particles. It was therefore considered that gold particles promote dissociative adsorption of oxygen and the adsorbed oxygen reacts with adsorbed ethylene on support adjacent to the active site.

Genome-wide analysis and expression profiling of zinc finger homeodomain ( ZHD ) family genes reveal likely roles in organ development and stress responses in tomato

BackgroundZinc finger homeodomain proteins (ZHD) constitute a plant-specific transcription factor family with a conserved DNA binding homeodomain and a zinc finger motif. Members of the ZHD protein family play important roles in plant growth, development, and stress responses. Genome-wide characterization of ZHD genes has been carried out in several model plants, including Arabidopsis thaliana and Oryza sativa, but not yet in tomato (Solanum lycopersicum).ResultsIn this study, we performed the first comprehensive genome-wide characterization and expression profiling of the ZHD gene family in tomato (Solanum lycopersicum). We identified 22 SlZHD genes and classified them into six subfamilies based on phylogeny. The SlZHD genes were generally conserved in each subfamily, with minor variations in gene structure and motif distribution. The 22 SlZHD genes were distributed on six of the 12 tomato chromosomes, with segmental duplication detected in four genes. Analysis of Ka/Ks ratios revealed that the duplicated genes are under negative or purifying selection. Comprehensive expression analysis revealed that the SlZHD genes are widely expressed in various tissues, with most genes preferentially expressed in flower buds compared to other tissues. Moreover, many of the genes are responsive to abiotic stress and phytohormone treatment.ConclusionSystematic analysis revealed structural diversity among tomato ZHD proteins, which indicates the possibility for diverse roles of SlZHD genes in different developmental stages as well as in response to abiotic stresses. Our expression analysis of SlZHD genes in various tissues/organs and under various abiotic stress and phytohormone treatments sheds light on their functional divergence. Our findings represent a valuable resource for further analysis to explore the biological functions of tomato ZHD genes.