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Dive into the research topics where Donald R. Kobayashi is active.

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Featured researches published by Donald R. Kobayashi.


Progress in Oceanography | 2001

The transition zone chlorophyll front, a dynamic global feature defining migration and forage habitat for marine resources

Jeffrey J. Polovina; Evan A. Howell; Donald R. Kobayashi; Michael P. Seki

Abstract Pelagic ecosystem dynamics on all temporal scales may be driven by the dynamics of very specialized oceanic habitats. One such habitat is the basin-wide chlorophyll front located at the boundary between the low chlorophyll subtropical gyres and the high chlorophyll subarctic gyres. Global satellite maps of surface chlorophyll clearly show this feature in all oceans. In the North Pacific, the front is over 8000 km long and seasonally migrates north and south about 1000 km. In the winter this front is located at about 30–35°N latitude and in the summer at about 40–45°N. It is a zone of surface convergence where cool, vertically mixed, high chlorophyll, surface water on the north side sinks beneath warm, stratified, low chlorophyll water on the south side. Satellite telemetry data on movements of loggerhead turtles and detailed fisheries data for albacore tuna show that both apex predators travel along this front as they migrate across the North Pacific. The front is easily monitored with ocean color satellite remote sensing. A change in the position of the TZCF between 1997 and 1998 appears to have altered the spatial distribution of loggerhead turtles. The position and dynamics of the front varied substantially between the 1998 El Nino and the 1999 La Nina. For example, from May to July 1999 the transition zone chlorophyll front (TZCF) remained between about 35°N and 40°N latitude showing very little meandering, whereas in 1998, during the same period, the TZCF exhibited considerable meandering and greater monthly latitudinal movement. Catch rates for albacore were considerably higher in 1998 than in 1999, and we hypothesize that a meandering TZCF creates regions of convergence, which enhances the foraging habitat for apex predators along the front.


Journal of Marine Biology | 2011

Genetic Analyses and Simulations of Larval Dispersal Reveal Distinct Populations and Directional Connectivity across the Range of the Hawaiian Grouper (Epinephelus quernus)

Malia Ana J. Rivera; Kimberly R. Andrews; Donald R. Kobayashi; Johanna L. K. Wren; Christopher Kelley; George K. Roderick; Robert J. Toonen

Integration of ecological and genetic data to study patterns of biological connectivity can aid in ecosystem-based management. Here we investigated connectivity of the Hawaiian grouper Epinephelus quernus, a species of management concern within the Main Hawaiian Islands (MHI), by comparing genetic analyses with simulated larval dispersal patterns across the species range in the Hawaiian Archipelago and Johnston Atoll. Larval simulations revealed higher dispersal from the MHI to the Northwestern Hawaiian Islands (NWHI) than in the opposite direction and evidence for a dispersal corridor between Johnston and the middle of the Hawaiian Archipelago. Genetic analyses using mitochondrial DNA (mtDNA) control region sequences and microsatellites revealed relatively high connectivity across the Hawaiian Archipelago, with the exception of genetically distinct populations and higher mtDNA diversity in the mid-Archipelago. These analyses support the preservation of the mid-archipelago as a source of genetic diversity and a region of connectivity with locations outside the Hawaiian Archipelago. Additionally, our evidence for directional dispersal away from the MHI lends caution to any management decisions that would rely on the NWHI replenishing depleted MHI stocks.


Fisheries Science | 2007

Comparison of three seabird bycatch avoidance methods in Hawaii-based pelagic longline fisheries

Eric Gilman; Donald R. Kobayashi

Capture in longline fisheries is a critical threat to most albatross and large petrel species. Blackfooted Phoebastria nigripes and Laysan P. immutabilis albatrosses are the predominant seabird species incidentally caught in Hawaii longline fisheries. This study reports results of a trial in the Hawaii pelagic longline tuna and swordfish fisheries comparing four experimental treatments’ seabird capture rates and commercial viability. Two research fishing trips were conducted between 1 April and 17 May 2003 on a Hawaii-based pelagic longline vessel, at traditional fishing grounds south of the Northwestern Hawaiian Islands, between 21° 41′N and 25° 08′N, 173° 58′W and 167° 43′W.


Fisheries Research | 1995

Evaluation of shark, dolphin and monk seal interactions with Northwestern Hawaiian Island bottomfishing activity: a comparison of two time periods and an estimate of economic impacts

Donald R. Kobayashi; Kurt E. Kawamoto

Abstract The incidence rates of bottomfish damaged by sharks, dolphins, and monk seals were compared from two sources of observer data taken aboard commercial bottomfishing vessels in the Northwestern Hawaiian Islands. The current (1990–1993) shark damage rate is significantly different from, and nearly six times higher than, the rate measured in 1981–1982. The dolphin and monk seal damage rates are also currently higher than the earlier rates. These temporal differences could be indicative of an increasing trend in interaction rates. A theoretical model is developed to estimate unobservable losses of fish based on the amount of fishing gear lost. The current economic impact is estimated to be approximately


PLOS ONE | 2014

“Going with the Flow” or Not: Evidence of Positive Rheotaxis in Oceanic Juvenile Loggerhead Turtles ( Caretta caretta ) in the South Pacific Ocean Using Satellite Tags and Ocean Circulation Data

Donald R. Kobayashi; Richard Farman; Jeffrey J. Polovina; Denise M. Parker; Marc Rice; George H. Balazs

700,000 annually (or approximately


Journal of Geophysical Research | 2016

Bomb-produced radiocarbon in the western tropical Pacific Ocean: Guam coral reveals operation-specific signals from the Pacific Proving Grounds

Allen H. Andrews; Ryuji Asami; Yasufumi Iryu; Donald R. Kobayashi; Frank Camacho

7000 of lost revenue per trip on average) considering all sources of losses.


PLOS ONE | 2016

Modeled Population Connectivity across the Hawaiian Archipelago

Johanna L. K. Wren; Donald R. Kobayashi; Yanli Jia; Robert J. Toonen

The movement of juvenile loggerhead turtles (n = 42) out-fitted with satellite tags and released in oceanic waters off New Caledonia was examined and compared with ocean circulation data. Merging of the daily turtle movement data with drifter buoy movements, OSCAR (Ocean Surface Current Analyses - Real time) circulation data, and three different vertical strata (0–5 m, 0–40 m, 0–100 m) of HYCOM (HYbrid Coordinate Ocean Model) circulation data indicated the turtles were swimming against the prevailing current in a statistically significant pattern. This was not an artifact of prevailing directions of current and swimming, nor was it an artifact of frictional slippage. Generalized additive modeling was used to decompose the pattern of swimming into spatial and temporal components. The findings are indicative of a positive rheotaxis whereby an organism is able to detect the current flow and orient itself to swim into the current flow direction or otherwise slow down its movement. Potential mechanisms for the means and adaptive significance of rheotaxis in oceanic juvenile loggerhead turtles are discussed.


PeerJ | 2016

Exploration of the “larval pool”: development and ground-truthing of a larval transport model off leeward Hawai‘i

Johanna L. K. Wren; Donald R. Kobayashi

High-resolution radiocarbon (14C) analyses on a coral core extracted from Guam, a western tropical Pacific island, revealed a series of early bomb-produced 14C spikes. The typical marine bomb 14C signal—phase lagged and attenuated relative to atmospheric records—is present in the coral and is consistent with other regional coral records. However, 14C levels well above what can be attributed to air-sea diffusion alone punctuate this pattern. This anomaly was observed in other Indo-Pacific coral records, but the Guam record is unmatched in magnitude and temporal resolution. The Guam coral Δ14C record provided three spikes in 1954–1955, 1956–1957, and 1958–1959 that are superimposed on a normal 14C record. Relative to mean prebomb levels, the first peak rises an incredible ∼700‰ and remained elevated for ∼1.2 years. A follow up assay with finer resolution increased the peak by ∼300‰. Subsequent spikes were less intense with a rise of ∼35 and ∼70‰. Each can be linked to thermonuclear testing in the Pacific Proving Grounds at Bikini and Enewetak atolls in Operations Castle (1954), Redwing (1956), and Hardtack I (1958). These 14C signals can be explained by vaporization of coral reef material in the nuclear fireball, coupled with neutron activation of atmospheric nitrogen (14C production), and subsequent absorption of 14CO2 to form particulate carbonates of close-in fallout. The lag time in reaching Guam and other coral records abroad was tied to ocean surface currents and modeling provided validation of 14C arrival observations.


Pacific Science | 2018

Nocturnal Visual Census of Pelagic Fauna Using Scuba near Kona, Hawai‘i

Jeffrey W. Milisen; Sarah A. Matye; Donald R. Kobayashi

We present the first comprehensive estimate of connectivity of passive pelagic particles released from coral reef habitat throughout the Hawaiian Archipelago. Potential connectivity is calculated using a Lagrangian particle transport model coupled offline with currents generated by an oceanographic circulation model, MITgcm. The connectivity matrices show a surprising degree of self-recruitment and directional dispersal towards the northwest, from the Main Hawaiian Islands (MHI) to the northwestern Hawaiian Islands (NWHI). We identify three predicted connectivity breaks in the archipelago, that is, areas in the mid and northern part of the archipelago that have limited connections with surrounding islands and reefs. Predicted regions of limited connectivity generally match observed patterns of genetic structure reported for coral reef species in the uninhabited NWHI, but multiple genetic breaks observed in the inhabited MHI are not explained by passive dispersal. The better congruence in our modeling results based on physical transport of passive particles in the low-lying atolls of the uninhabited NWHI, but not in the anthropogenically impacted high islands of the MHI begs the question: what ultimately controls connectivity in this system?


Fisheries Oceanography | 2000

Turtles on the edge: movement of loggerhead turtles (Caretta caretta) along oceanic fronts, spanning longline fishing grounds in the central North Pacific, 1997–1998

Jeffrey J. Polovina; Donald R. Kobayashi; Denise M. Parker; Michael P. Seki; George H. Balazs

Most adult reef fish show site fidelity thus dispersal is limited to the mobile larval stage of the fish, and effective management of such species requires an understanding of the patterns of larval dispersal. In this study, we assess larval reef fish distributions in the waters west of the Big Island of Hawai‘i using both in situ and model data. Catches from Cobb midwater trawls off west Hawai‘i show that reef fish larvae are most numerous in offshore waters deeper than 3,000 m and consist largely of pre-settlement Pomacanthids, Acanthurids and Chaetodontids. Utilizing a Lagrangian larval dispersal model, we were able to replicate the observed shore fish distributions from the trawl data and we identified the 100 m depth strata as the most likely depth of occupancy. Additionally, our model showed that for larval shore fish with a pelagic larval duration longer than 40 days there was no significant change in settlement success in our model. By creating a general additive model (GAM) incorporating lunar phase and angle we were able to explain 67.5% of the variance between modeled and in situ Acanthurid abundances. We took steps towards creating a predictive larval distribution model that will greatly aid in understanding the spatiotemporal nature of the larval pool in west Hawai‘i, and the dispersal of larvae throughout the Hawaiian archipelago.

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Jeffrey J. Polovina

National Oceanic and Atmospheric Administration

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Eric Gilman

Hawaii Pacific University

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Denise M. Parker

Joint Institute for Marine and Atmospheric Research

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George H. Balazs

National Marine Fisheries Service

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Evan A. Howell

National Marine Fisheries Service

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Michael P. Seki

National Marine Fisheries Service

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Karin A. Forney

National Oceanic and Atmospheric Administration

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Paul Dalzell

National Oceanic and Atmospheric Administration

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Allen H. Andrews

National Marine Fisheries Service

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Irene Kinan

National Oceanic and Atmospheric Administration

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