Donghyo Kim

Sequential Process Combination of Photocatalytic Oxidation and Dark Reduction for the Removal of Organic Pollutants and Cr(VI) using Ag/TiO2

We investigated a sequential photocatalysis-dark reaction, wherein organic pollutants were degraded on Ag/TiO2 under UV irradiation and the dark reduction of hexavalent chromium (Cr(VI)) was subsequently followed. The photocatalytic oxidation of 4-chlorophenol (4-CP), a test organic substrate, induced the generation of degradation intermediates and the storage of electrons in Ag/TiO2 which were then utilized for reducing Cr(VI) in the postirradiation period. The dark reduction efficiency of Cr(VI) was much higher with Ag/TiO2 (87%), compared with bare TiO2 (27%) and Pt/TiO2 (22%). The Cr(VI) removal by Ag/TiO2 (87%) was contributed by adsorption (31%), chemical reduction by intermediates of 4-CP degradation (26%), and reduction by electrons stored in Ag (30%). When formic acid, humic acid or ethanol was used as an alternative organic substrate, the electron storage effect was also observed. The postirradiation removal of Cr(VI) on Ag/TiO2 continued for hours, which is consistent with the observation that a residual potential persisted on the Ag/TiO2 electrode in the dark whereas little residual potential was observed on bare TiO2 and Pt/TiO2 electrodes. The stored electrons in Ag/TiO2 and their transfer to Cr(VI) were also indicated by the UV-visible absorption spectral change. Moreover, the electrons stored in the preirradiated Ag/TiO2 reacted with O2 with showing a sign of low-level OH radical generation in the dark period.

Effect of magnetic field on the zero valent iron induced oxidation reaction

The magnetic field (MF) effect on the zero valent iron (ZVI) induced oxidative reaction was investigated for the first time. The degradation of 4-chlorophenol (4-CP) in the ZVI system was employed as the test oxidative reaction. MF markedly enhanced the degradation of 4-CP with the concurrent production of chlorides. The consumption of dissolved O(2) by ZVI reaction was also enhanced in the presence of MF whereas the competing reaction of H(2) production from proton reduction was retarded. Since the ZVI-induced oxidation is mainly driven by the in situ generated hydroxyl radicals, the production of OH radicals was monitored by the spin trap method using electron spin resonance (ESR) spectroscopy. It was confirmed that the concentration of trapped OH radicals was enhanced in the presence of MF. Since both O(2) and Fe(0) are paramagnetic, the diffusion of O(2) onto the iron surface might be accelerated under MF. The magnetized iron can attract oxygen on itself, which makes the mass transfer process faster. As a result, the surface electrochemical reaction between Fe(0) and O(2) can be accelerated with the enhanced production of OH radicals. MF might retard the recombination of OH radicals as well.

Photooxidation of Arsenite under 254 nm Irradiation with a Quantum Yield Higher than Unity

Arsenite (As(III)) in water was demonstrated to be efficiently oxidized to arsenate (As(V)) under 254 nm UV irradiation without needing any chemical reagents. Although the molar absorption coefficient of As(III) at 254 nm is very low (2.49 ± 0.1 M(-1)cm(-1)), the photooxidation proceeded with a quantum yield over 1.0, which implies a chain of propagating oxidation cycles. The rate of As(III) photooxidation was highly enhanced in the presence of dissolved oxygen, which can be ascribed to its dual role as an electron acceptor of photoexcited As(III) and a precursor of oxidizing radicals. The in situ production of H2O2 was observed during the photooxidation of As(III) and its subsequent photolysis under UV irradiation produced OH radicals. The addition of tert-butyl alcohol as OH radical scavenger significantly reduced (but not completely inhibited) the oxidation rate, which indicates that OH radicals as well as superoxide serve as an oxidant of As(III). Superoxide, H2O2, and OH radicals were all in situ generated from the irradiated solution of As(III) in the presence of dissolved O2 and their subsequent reactions with As(III) induce the regeneration of some oxidants, which makes the overall quantum yield higher than 1. The homogeneous photolysis of arsenite under 254 nm irradiation can be also proposed as a new method of generating OH radicals.

OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research.

Online application for survival analysis (OASIS) has served as a popular and convenient platform for the statistical analysis of various survival data, particularly in the field of aging research. With the recent advances in the fields of aging research that deal with complex survival data, we noticed a need for updates to the current version of OASIS. Here, we report OASIS 2 (http://sbi.postech.ac.kr/oasis2), which provides extended statistical tools for survival data and an enhanced user interface. In particular, OASIS 2 enables the statistical comparison of maximal lifespans, which is potentially useful for determining key factors that limit the lifespan of a population. Furthermore, OASIS 2 provides statistical and graphical tools that compare values in different conditions and times. That feature is useful for comparing age-associated changes in physiological activities, which can be used as indicators of “healthspan.” We believe that OASIS 2 will serve as a standard platform for survival analysis with advanced and user-friendly statistical tools for experimental biologists in the field of aging research.

Heterogeneous Catalytic Oxidation of As(III) on Nonferrous Metal Oxides in the Presence of H2O2

The oxidation of As(III) (arsenite) to As(V) (arsenate), a critical pretreatment process for total arsenic removal, is easily achieved using chemical oxidation methods. Hydrogen peroxide (H2O2) is widely used as an environmentally benign oxidant but its practical use for the arsenite oxidation is limited by the strong pH dependence and slow oxidation kinetics. This study demonstrated that H2O2-induced oxidation of As(III) can be markedly enhanced in the presence of nonferrous metal oxides (e.g., WO3, TiO2, ZrO2) as a heterogeneous catalyst working over a wide pH range in ambient reaction conditions. In particular, TiO2 is an ideal catalyst because it is not only active and stable but also easily available and inexpensive. Although the photocatalytic oxidation of As(III) on TiO2 was intensively studied, the thermal catalytic activities of TiO2 and other nonferrous metal oxides for the arsenic oxidation have been little investigated. The heterogeneous oxidation rate increased with increasing the TiO2 surface area and [H2O2] and weakly depended on pH whereas the homogeneous oxidation by H2O2 alone was favored only at alkaline condition. The oxidation rate in the TiO2/H2O2 system was not reduced at all in the absence of dioxygen. It was not retarded at all by OH radical scavengers but markedly inhibited by hydroperoxyl radical scavengers. It is proposed that the surface complexation of H2O2 on TiO2 induces the generation of the surface hydroperoxyl radical through an inner-sphere electron transfer, which subsequently reacts with As(III). The catalytic activity of TiO2 was maintained without showing any sign of deactivation. The heterogeneous catalytic oxidation is proposed as a viable method for the preoxidation treatment of As(III)-contaminated water under ambient conditions.

Capicua suppresses hepatocellular carcinoma progression by controlling the ETV4–MMP1 axis

Hepatocellular carcinoma (HCC) is developed by multiple steps accompanying progressive alterations of gene expression, which leads to increased cell proliferation and malignancy. Although environmental factors and intracellular signaling pathways that are critical for HCC progression have been identified, gene expression changes and the related genetic factors contributing to HCC pathogenesis are still insufficiently understood. In this study, we identify a transcriptional repressor, Capicua (CIC), as a suppressor of HCC progression and a potential therapeutic target. Expression of CIC is posttranscriptionally reduced in HCC cells. CIC levels are correlated with survival rates in patients with HCC. CIC overexpression suppresses HCC cell proliferation and invasion, whereas loss of CIC exerts opposite effects in vivo as well as in vitro. Levels of polyoma enhancer activator 3 (PEA3) group genes, the best‐known CIC target genes, are correlated with lethality in patients with HCC. Among the PEA3 group genes, ETS translocation variant 4 (ETV4) is the most significantly up‐regulated in CIC‐deficient HCC cells, consequently promoting HCC progression. Furthermore, it induces expression of matrix metalloproteinase 1 (MMP1), the MMP gene highly relevant to HCC progression, in HCC cells; and knockdown of MMP1 completely blocks the CIC deficiency–induced HCC cell proliferation and invasion. Conclusion: Our study demonstrates that the CIC–ETV4–MMP1 axis is a regulatory module controlling HCC progression. (Hepatology 2018;67:2287‐2301).

Divergence of Noncoding Regulatory Elements Explains Gene–Phenotype Differences between Human and Mouse Orthologous Genes

Mice have been widely used as a model organism to investigate human gene-phenotype relationships based on a conjecture that orthologous genes generally perform similar functions and are associated with similar phenotypes. However, phenotypes associated with orthologous genes often turn out to be quite different between human and mouse. Herein, we devised a method to quantitatively compare phenotypes annotations associated with mouse models and human. Using semantic similarity comparisons, we identified orthologous genes with different phenotype annotations, of which the similarity score is on a par with that of random gene pairs. Analysis of sequence evolution and transcriptomic changes revealed that orthologous genes with phenotypic differences are correlated with changes in noncoding regulatory elements and tissue-specific expression profiles rather than changes in protein-coding sequences. To map accurate gene-phenotype relationships using model organisms, we propose that careful consideration of the evolutionary divergence of noncoding regulatory elements and transcriptomic profiles is essential.

Homogeneous photocatalytic Fe3+/Fe2+ redox cycle for simultaneous Cr(VI) reduction and organic pollutant oxidation: Roles of hydroxyl radical and degradation intermediates

The sustained oxidation of aqueous organic pollutants using hydroxyl radicals (HO) generated in the UV-irradiated solution of ferric ions was investigated in the presence of Cr(VI). The synergistic effect of simultaneous 4-chlorophenol (4-CP) oxidation and Cr(VI) reduction is explained in terms of the various roles of OH radical, degradation intermediates, and Fe3+/Fe2+ redox cycle. The photolysis of FeIII(OH)2+ generates OH radical which degrades the organic substrate. The reduction of Cr(VI) was inhibited by the OH radical-induced re-oxidation of Cr(III) in the absence of 4-CP. The complete removal of Cr(VI) was achieved only in the presence of phenolic substrates which not only reacts with OH radical (hence inhibiting the reoxidation of Cr(III)) but also generates reducing intermediates which effectively reduce Cr(VI). Fe2+ also converted Cr(VI) to Cr(III) with regenerating Fe3+, which makes the overall process photocatalytic. The photocatalytic activity for the simultaneous removal of 4-CP and Cr(VI) was largely maintained up to five cycles. Such simultaneous and synergic photoactivity was also observed for other phenolic compounds (4-bromophenol, 4-nitrophenol, phenol). The simultaneous and synergic removal of phenolic compounds and Cr(VI) can be enabled through the redox couple of Fe3+/Fe2+ working as a homogeneous photocatalyst.