E.A. Addink

The Importance of Scale in Object-based Mapping of Vegetation Parameters with Hyperspectral Imagery

In recent years, object-oriented image analysis has been widely adopted by the remote sensing community. Much attention has been given to its application, while the fundamental issue of scale, here characterized by spatial object-definition, seems largely neglected. In the case of vegetation parameters like aboveground biomass and leaf area index (LAI), fundamental objects are individual trees or shrubs, each of which has a specific value. Their spatial extent, however, does not match pixels in size and shape, nor does it fit the requirements of regional studies. Estimation of vegetation parameters consequently demands larger observation units, like vegetation patches, which are better represented by variably shaped objects than by square pixels. This study aims to investigate optimal object definition for biomass and LAI. We have data from 243 field plots in our test site in southern France. They cover a vegetation range from landes to garrigue to maquis, which is considered to be the climax vegetation in the area. A HyMap image covers the area. The image is subjected to a Minimum Noise Fraction (MNF) transformation, after which it is segmented with ten different heterogeneities. The result is ten object sets, each having a different mean object size. These object sets are combined with the original image with the mean band values serving as object attributes. Field observations are linked to the corresponding objects for each object set. Using Ridge regression, relations between field observations and spectral values are identified. The prediction error is determined for each object set by cross validation. The overall lowest prediction error indicates the optimal heterogeneity for segmentation. Results show that the scale of prediction affects prediction accuracy, that increasing the object size yields an optimum in prediction accuracy, and that aboveground biomass and LAI can be associated with different optimal object sizes. Furthermore, it is shown that the accuracy of parameter estimation is higher for object-oriented analysis than for per-pixel analysis.

Introduction to the GEOBIA 2010 special issue: From pixels to geographic objects in remote sensing image analysis

Abstract Traditional image analysis methods are mostly pixel-based and use the spectral differences of landscape elements at the Earth surface to classify these elements or to extract element properties from the Earth Observation image. Geographic object-based image analysis (GEOBIA) has received considerable attention over the past 15 years for analyzing and interpreting remote sensing imagery. In contrast to traditional image analysis, GEOBIA works more like the human eye–brain combination does. The latter uses the objects color (spectral information), size, texture, shape and occurrence to other image objects to interpret and analyze what we see. GEOBIA starts by segmenting the image grouping together pixels into objects and next uses a wide range of object properties to classify the objects or to extract objects properties from the image. Significant advances and improvements in image analysis and interpretation are made thanks to GEOBIA. In June 2010 the third conference on GEOBIA took place at the Ghent University after successful previous meetings in Calgary (2008) and Salzburg (2006). This special issue presents a selection of the 2010 conference papers that are worked out as full research papers for JAG. The papers cover GEOBIA applications as well as innovative methods and techniques. The topics range from vegetation mapping, forest parameter estimation, tree crown identification, urban mapping, land cover change, feature selection methods and the effects of image compression on segmentation. From the original 94 conference papers, 26 full research manuscripts were submitted; nine papers were selected and are presented in this special issue. Selection was done on the basis of quality and topic of the studies. The next GEOBIA conference will take place in Rio de Janeiro from 7 to 9 May 2012 where we hope to welcome even more scientists working in the field of GEOBIA.

MERIS and the red-edge position

Abstract The Medium Resolution Imaging Spectrometer (MERIS) is a payload component of Envisat-1. MERIS will be operated over land with a standard 15 band setting acquiring images with a 300 m spatial resolution. The red-edge position (REP) is a promising variable for deriving foliar chlorophyll concentration, which plays an important role in ecosystem processes. The objectives of this paper are: (1) to study which factors effect the REP of vegetation, (2) to study whether this REP can be derived from the MERIS standard band setting and (3) to show what REP represents at the scale of MERIS data. Two different data sets were explored for simulating the REP using MERIS bands: (1) simulated data using reflectance models and (2) airborne reflectance spectra of an agricultural area obtained by the airborne visible-infrared imaging spectrometer (AVIRIS). A “linear method”, assuming a straight slope of the reflectance spectrum around the midpoint of the slope, was a robust method for determining the REP and the MERIS bands at 665, 708.75, 753.75 and 778.75 nm could be used for applying the “linear method” for REP estimation. Results of the translation to the scale of MERIS data were very promising for applying MERIS at, for instance, the ecosystem level.

A comparison of conventional and geostatistical methods to replace clouded pixels in NOAA-AVHRR images

The potential of using National Oceanic and Atmospheric Administration (NOAA) Advanced Very High Resolution Radiometer (AVHRR) images for large areas is often limited by cloud cover. It could be increased when small clouds are replaced by estimated reflection and emission values. In this study seven replacement methods are compared, ranging from simple replacement to stratified co-kriging. Images of subsequent days serve as co-variable, enabling the use of spatial and temporal information. For validation, cloud-free pixels were replaced with four patterns of artificially clouded pixels. Co-kriging as a combination of both temporal and spatial information resulted in the best estimates, reducing the mean squared errors by 20-70%. Stratification of the image did not result in better cloud replacement. Once kriging options have been implemented in existing image processing packages, co-kriging will be an easy-to-use solution to missing values, provided that images of subsequent days of low cloud coverage are...

Spatial scale variations in vegetation indices and above-ground biomass estimates: Implications for MERIS

The Medium Resolution Imaging Spectrometer (MERIS) is one of the sensors carried by Envisat. MERIS is a fully programmable imaging spectrometer, however a standard 15-channel band set will be transmitted for each 300 m pixel (over land while over the ocean the pixels will be aggregated to 1200 m spatial resolution) covering visible and near-infrared wavelengths. Since MERIS is a multidisciplinary sensor providing data that can be input into ecosystem models at various scales, we studied MERISs performance relative to the scale of observation using simulated datasets degraded to various spatial resolutions in the range of 6-300 m. Algorithms to simulate MERIS data using airborne imaging spectrometer datasets were presented, including a case study from DAIS (i.e. Digital Airborne Imaging Spectrometer) 79-channel imaging spectrometer data acquired on 8 July 1997 over the Le Peyne test site in southern France. For selected target endmembers garrigue, maquis, mixed oak forest, pine forest and bare agricultural field, regions-of-interest (ROI) were defined in the DAIS scene. For each of the endmembers, the vegetation index values in the corresponding ROI is calculated for the MERIS data at the spatial resolutions ranging from 6 to 300 m. We applied the NDVI, PVI, WDVI, SAVI, MSAVI, MSAVI2 and GEMI vegetation indices. Above-ground biomass (AGB) was estimated in the field and derived from the DAIS image and the MERIS datasets (6-300 m spatial resolution). The vegetation indices are shown to be constant with the spatial scale of observation. The strongest correlation between the MERIS and DAIS NDVI is obtained when using a linear model with an offset of 0.15 ( r =0.31). A Pearson correlation matrix between AGB measured in the field and each spectral band reveals a modest but significant ( p <0.05) correlation for most spectral bands. When mathematical functions are fitted through the NDVI and biomass data, an exponential fit shows the extinction and saturation at larger vegetation biomass values. The correlation between biomass and NDVI for DAIS as well as for the MERIS simulated dataset is modest. Further research is required to analyse the scale effects that limit the correlation between field and image AGB estimates.

Linking Flow Regime, Floodplain Lake Connectivity and Fish Catch in a Large River-Floodplain System, the Volga-Akhtuba Floodplain (Russian Federation)

River-floodplain systems are amongst the most productive—but often severely impacted—aquatic systems worldwide. We explored the ecological response of fish to flow regime in a large river-floodplain system by studying the relationships between (1) discharge and inundated floodplain area, with a focus on spatial and temporal patterns in floodplain lake connectivity, and (2) flood volume and fisheries catch. Our results demonstrate a non-linear relationship between discharge and floodplain inundation with considerable hysteresis due to differences in inundation and drainage rate. Inundation extent was mostly determined by flood volume, not peak discharge. We found that the more isolated lakes (that is, lakes with a shorter connection duration to the river) are located at higher local elevation and at larger hydrological distance from the main rivers: geographical distance to the river appears a poor predictor of lake isolation. Although year-to-year fish catches in the floodplain were significantly larger with larger flood volumes in the floodplain, they were not in the main river, suggesting that mechanisms that increase catch, such as increased floodplain access or increased somatic growth, are stimulated by flooding in the floodplain, but not in the river. Fish species that profit from flooding belong to different feeding guilds, suggesting that all trophic levels may benefit from flooding. We found indications that the ecological functioning of floodplains is not limited to its temporary availability as habitat. Refugia can be present within the floodplain itself, which should be considered in the management of large rivers and their floodplain.

Mapping the distribution of the main host for plague in a complex landscape in Kazakhstan: An object-based approach using SPOT-5 XS, Landsat 7 ETM+, SRTM and multiple Random Forests

Highlights ► Local topography, Tasselled Cap Greenness and Tasselled Cap Brightness were used to create a landscape map using object-based analysis. ► A multi-scale object-based stratification approach improved accuracy of classification of burrows. ► The burrow maps provide realistic patterns to study the spread and persistence of plague.

Agricultural cropland mapping using black-and-white aerial photography, Object-Based Image Analysis and Random Forests

Land-use and land-cover (LULC) conversions have an important impact on land degradation, erosion and water availability. Information on historical land cover (change) is crucial for studying and modelling land- and ecosystem degradation. During the past decades major LULC conversions occurred in Africa, Southeast Asia and South America as a consequence of a growing population and economy. Most distinct is the conversion of natural vegetation into cropland. Historical LULC information can be derived from satellite imagery, but these only date back until approximately 1972. Before the emergence of satellite imagery, landscapes were monitored by black-and-white (B&W) aerial photography. This photography is often visually interpreted, which is a very time-consuming approach. This study presents an innovative, semi-automated method to map cropland acreage from B&W photography. Cropland acreage was mapped on two study sites in Ethiopia and in The Netherlands. For this purpose we used Geographic Object-Based Image Analysis (GEOBIA) and a Random Forest classification on a set of variables comprising texture, shape, slope, neighbour and spectral information. Overall mapping accuracies attained are 90% and 96% for the two study areas respectively. This mapping method increases the timeline at which historical cropland expansion can be mapped purely from brightness information in B&W photography up to the 1930s, which is beneficial for regions where historical land-use statistics are mostly absent.

Spatial distribution patterns of plague hosts : point pattern analysis of the burrows of great gerbils in Kazakhstan

Abstract Aim The spatial structure of a population can strongly influence the dynamics of infectious diseases, yet rarely is the underlying structure quantified. A case in point is plague, an infectious zoonotic disease caused by the bacterium Yersinia pestis. Plague dynamics within the Central Asian desert plague focus have been extensively modelled in recent years, but always with strong uniformity assumptions about the distribution of its primary reservoir host, the great gerbil (Rhombomys opimus). Yet, while clustering of this species’ burrows due to social or ecological processes could have potentially significant effects on model outcomes, there is currently nothing known about the spatial distribution of inhabited burrows. Here, we address this knowledge gap by describing key aspects of the spatial patterns of great gerbil burrows in Kazakhstan. Location Kazakhstan. Methods Burrows were classified as either occupied or empty in 98 squares of four different sizes: 200 m (side length), 250 m, 500 m and 590–1020 m. We used Ripleys K statistic to determine whether and at what scale there was clustering of occupied burrows, and semi‐variograms to quantify spatial patterns in occupied burrows at scales of 250 m to 9 km. Results Significant spatial clustering of occupied burrows occurred in 25% and 75% of squares of 500 m and 590–1020 m, respectively, but not in smaller squares. In clustered squares, the clustering criterion peaked around 250 m. Semi‐variograms showed that burrow density was auto‐correlated up to a distance of 7 km and occupied density up to 2.5 km. Main conclusions These results demonstrate that there is statistically significant spatial clustering of occupied burrows and that the uniformity assumptions of previous plague models should be reconsidered to assess its significance for plague transmission. This field evidence will allow for more realistic approaches to disease ecology models for both this system and for other structured host populations.

The Perfect Burrow, but for What? Identifying Local Habitat Conditions Promoting the Presence of the Host and Vector Species in the Kazakh Plague System

Introduction The wildlife plague system in the Pre-Balkhash desert of Kazakhstan has been a subject of study for many years. Much progress has been made in generating a method of predicting outbreaks of the disease (infection by the gram negative bacterium Yersinia pestis) but existing methods are not yet accurate enough to inform public health planning. The present study aimed to identify characteristics of individual mammalian host (Rhombomys opimus) burrows related to and potentially predictive of the presence of R.opimus and the dominant flea vectors (Xenopsylla spp.). Methods Over four seasons, burrow characteristics, their current occupancy status, and flea and tick burden of the occupants were recorded in the field. A second data set was generated of long term occupancy trends by recording the occupancy status of specific burrows over multiple occasions. Generalised linear mixed models were constructed to identify potential burrow properties predictive of either occupancy or flea burden. Results At the burrow level, it was identified that a burrow being occupied by Rhombomys, and remaining occupied, were both related to the characteristics of the sediment in which the burrow was constructed. The flea burden of Rhombomys in a burrow was found to be related to the tick burden. Further larger scale properties were also identified as being related to both Rhombomys and flea presence, including latitudinal position and the season. Conclusions Therefore, in advancing our current predictions of plague in Kazakhstan, we must consider the landscape at this local level to increase our accuracy in predicting the dynamics of gerbil and flea populations. Furthermore this demonstrates that in other zoonotic systems, it may be useful to consider the distribution and location of suitable habitat for both host and vector species at this fine scale to accurately predict future epizootics.