E. S. Naumova

Taxonomy, ecology, and genetics of the yeast Saccharomyces bayanus : A new object for science and practice

The review considers various aspects of the biology of the yeast Saccharomyces bayanus, which is distantly related to the cultured yeast S. cerevisiae. The cryotolerant S. bayanus strains found in wine-making became the second most important yeast for basic and applied studies. Introduction of natural and experimental hybrids of S. cerevisiae × S. bayanus in a range of fermentation processes indicates the high breeding importance of S. bayanus. The biological species S. bayanus acts as a new gene pool for the scientific and breeding projects.

The molecular genetic differentiation of cultured Saccharomyces strains

A comparative molecular genetic study of cultured Saccharomyces strains isolated from the surface of berries and various fermentation processes showed that baker’s yeast and black-currant isolates contain not only Saccharomyces cerevisiae but also S. cerevisiae × S. bayanus var. uvarum hybrids. The molecular karyotyping of baker’s, brewer’s, and wine yeasts showed their polyploidy. The restriction enzyme analysis of noncoding rDNA regions (5.8S-ITS and IGS2) makes it possible to differentiate species of the genus Saccharomyces and to identify interspecies hybrids. The microsatellite primer (GTG)5 can be used to study the populations of cultured S. cerevisiae strains.

Molecular genetic characteristics of Saccharomyces cerevisiae distillers’ yeasts

Genomes of 36 Saccharomyces distillers’ strains, mainly of domestic origin, were studied by PCR-RFLP analysis of rDNA 5.8S-ITS fragment, molecular karyotyping, and Southern hybridization. Molecular analysis revealed that all the strains belonged to the species S. cerevisiae. According to the karyotypic analysis, many of the strains were aneuploid. Accumulation of polymeric genes SUC and MAL was detected in S. cerevisiae distillers’ strains. Accumulation of polymeric genes of sugar fermentation may be of adaptive importance and may result in increased fermentation activity of the strains. It was demonstrated that most strains fermenting maltose after one day of fermentation possessed several MAL genes. Thermotolerant strains with high fermentation activity were selected.

Molecular genetic and physiological differentiation of Kluyveromyces lactis and Kluyveromyces marxianus: Analysis of strains from the all-Russian collection of microorganisms (VKM)

Molecular genetic identification of 52 Kluyveromyces strains from VKM, mainly of dairy origin, was carried out. Restriction analysis of 5.8S-ITS rDNA fragments was used to differentiate between Kl. lactis var. lactis, Kl. lactis var. drosophilarum (European population of “krassilnikovii”), and Kl. marxianus. Kl. lactis was shown to differ from Kl. marxianus in its ability to assimilate α-glucosides: maltose, melezitose, and α-methyl-glucoside.

Reidentification of chromosomal CUP1 translocations in the wine yeasts Saccharomyces cerevisiae

Reciprocal translocations between chromosomes XVI and VIII were revealed in eight Saccharomyces cerevisiae strains (mostly wine ones) using pulse-field electrophoresis of native chromosomal DNAs and their hybridizations with the CUP1 and GAL4 probes. New and reciprocal translocations of at least the gene CUP1 occur at the expense of crossing-over in the hybrids of such strains with the genetic lines of normal karyotype during meiosis. Relationship between these reciprocal translocations and the sulfite (Na2SO3) resistance gene SSU1-R is discussed.

Molecular genetic polymorphism of soil yeasts of the genus Williopsis from Taiwan Island

Comparative molecular genetic study of Williopsis yeasts isolated in different world regions reveals some peculiarities of species content in Taiwan. Some Williopsis yeasts may represent novel species. In Taiwan, four of the five known Williopsis species are documented: W. saturnus, W. suaveolens, W. mrakii, and W. subsufficiens. The W. saturnus yeasts predominate in Taiwanese soils, while W. suaveolens is more frequently isolated in Europe.

Hybrid Selection of Saccharomyces cerevisiae Yeasts for Thermotolerance and Fermentation Activity

Molecular genetic screening of Saccharomyces yeasts, isolated from natural sources in the regions of the world with a hot climate (Africa, South America, Southeast and Central Asia) was used for the search of thermotolerant S. cerevisiae strains. Based on physiological tests, four strains were selected that could grow at high temperatures (42 and 43°C) and had good fermentation activity: 7962-4B, 3529-7B, 52922-4-1-1A- 1C, and 87-2421.1-2A. Hybrids of monosporic culture of distiller’s race XII (XII7-2) with the thermotolerant strains were obtained. Unlike the strain XII7-2, which is unable to grow at above 39°C, all hybrids showed good growth at 42°C. Two of the six hybrids analyzed, H2-1 (87-2421.1-2A × XII7-2) and H3-2 (7962-4B × XII7-2), showed higher fermentation activity than the parental strains. According to the results obtained, inter-strain hybridization is an efficient method of obtaining S. cerevisiae strains, which combine thermotolerance with high efficiency of alcoholic fermentation.

Phylogenetics, Biogeography, and Ecology of Methylotrophic Yeasts of the Heterogeneous Genus Ogataea: Achivements and Prospects

Analysis of the literature and GenBank data showed that the genus Ogataea is heterogeneous and includes at least five non-described genera. Comprehensive phylogenetic analysis of the present genus Ogataea may be conducted only based on multigene analysis of all the known species. Possibilities of molecular species identification in biogeographical and ecological studies of yeasts are discussed.

Polymorphism of lactose genes in the dairy yeasts Kluyveromyces marxianus, potential probiotic microorganisms

Molecular karyotyping and Southern blot hybridization were used to investigate chromosomal polymorphism of the LAC genes controlling lactose fermentation in Kluyveromyces marxianus strains isolated from various dairy products and natural sources in Russia and CIS countries. Profound polymorphism of karyotype patterns and accumulation of LAC genes were observed in dairy K. marxianus strains. K. marxianus strains isolated from dairy products intensively fermented lactose at 37°C after one day of cultivation, while non-dairy strains exhibited delayed lactose fermentation or did not ferment it at all. Based on the fermentation tests, twelve K. marxianus strains were selected, which are of interest as potential probiotic microorganisms suitable for further molecular genetic studies and breeding.

Molecular phylogeny of pectinase genes PGU in the yeast genus Saccharomyces

Using yeast genome databases and literature data, phylogenetic analysis of pectinase PGU genes from 112 Saccharomyces strains assigned to the biological species S. arboricola, S. bayanus (var. uvarum), S. cariocanus, S. cerevisiae, S. kudriavzevii, S. mikatae, S. paradoxus, and the hybrid taxon S. pastorianus (syn. S. carlsbergensis) was carried out. A superfamily of divergent PGU genes was found. Natural interspecies transfer of the PGU gene both from S. cerevisiae to S. bayanus and from S. paradoxus to S. cerevisiae may, however, occur. Within the Saccharomyces species, identity of the PGU nucleotide sequences was 98.8–100% for S. cerevisiae, 86.1–95.7% for S. bayanus (var. uvarum), 94–98.3% for S. kudriavzevii, and 96.8–100% for S. paradoxus/S. cariocanus. For the first time, a family of polymeric PGU1b, PGU2b, PGU3b and PGU4b genes is documented for the yeast S. bayanus var. uvarum, a variety important for winemaking.