Efstathios D. Gennatas
University of California, San Francisco
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Proceedings of the National Academy of Sciences of the United States of America | 2010
Brandon A. Zielinski; Efstathios D. Gennatas; Juan Zhou; William W. Seeley
Intrinsic or resting state functional connectivity MRI and structural covariance MRI have begun to reveal the adult human brains multiple network architectures. How and when these networks emerge during development remains unclear, but understanding ontogeny could shed light on network function and dysfunction. In this study, we applied structural covariance MRI techniques to 300 children in four age categories (early childhood, 5–8 y; late childhood, 8.5–11 y; early adolescence, 12–14 y; late adolescence, 16–18 y) to characterize gray matter structural relationships between cortical nodes that make up large-scale functional networks. Network nodes identified from eight widely replicated functional intrinsic connectivity networks served as seed regions to map whole-brain structural covariance patterns in each age group. In general, structural covariance in the youngest age group was limited to seed and contralateral homologous regions. Networks derived using primary sensory and motor cortex seeds were already well-developed in early childhood but expanded in early adolescence before pruning to a more restricted topology resembling adult intrinsic connectivity network patterns. In contrast, language, social–emotional, and other cognitive networks were relatively undeveloped in younger age groups and showed increasingly distributed topology in older children. The so-called default-mode network provided a notable exception, following a developmental trajectory more similar to the primary sensorimotor systems. Relationships between functional maturation and structural covariance networks topology warrant future exploration.
NeuroImage | 2013
Theodore D. Satterthwaite; Daniel H. Wolf; Kosha Ruparel; Guray Erus; Mark A. Elliott; Simon B. Eickhoff; Efstathios D. Gennatas; Chad T. Jackson; Karthik Prabhakaran; Alex R. Smith; Hakon Hakonarson; Ragini Verma; Christos Davatzikos; Raquel E. Gur; Ruben C. Gur
Several independent studies have demonstrated that small amounts of in-scanner motion systematically bias estimates of resting-state functional connectivity. This confound is of particular importance for studies of neurodevelopment in youth because motion is strongly related to subject age during this period. Critically, the effects of motion on connectivity mimic major findings in neurodevelopmental research, specifically an age-related strengthening of distant connections and weakening of short-range connections. Here, in a sample of 780 subjects ages 8-22, we re-evaluate patterns of change in functional connectivity during adolescent development after rigorously controlling for the confounding influences of motion at both the subject and group levels. We find that motion artifact inflates both overall estimates of age-related change as well as specific distance-related changes in connectivity. When motion is more fully accounted for, the prevalence of age-related change as well as the strength of distance-related effects is substantially reduced. However, age-related changes remain highly significant. In contrast, motion artifact tends to obscure age-related changes in connectivity associated with segregation of functional brain modules; improved preprocessing techniques allow greater sensitivity to detect increased within-module connectivity occurring with development. Finally, we show that subjects age can still be accurately estimated from the multivariate pattern of functional connectivity even while controlling for motion. Taken together, these results indicate that while motion artifact has a marked and heterogeneous impact on estimates of connectivity change during adolescence, functional connectivity remains a valuable phenotype for the study of neurodevelopment.
The Journal of Neuroscience | 2013
Theodore D. Satterthwaite; Daniel H. Wolf; Guray Erus; Kosha Ruparel; Mark A. Elliott; Efstathios D. Gennatas; Ryan Hopson; Chad R. Jackson; Karthik Prabhakaran; Warren B. Bilker; Monica E. Calkins; James Loughead; Alex J. Smith; David R. Roalf; Hakon Hakonarson; Ragini Verma; Christos Davatzikos; Ruben C. Gur; Raquel E. Gur
Adolescence is characterized by rapid development of executive function. Working memory (WM) is a key element of executive function, but it is not known what brain changes during adolescence allow improved WM performance. Using a fractal n-back fMRI paradigm, we investigated brain responses to WM load in 951 human youths aged 8–22 years. Compared with more limited associations with age, WM performance was robustly associated with both executive network activation and deactivation of the default mode network. Multivariate patterns of brain activation predicted task performance with a high degree of accuracy, and also mediated the observed age-related improvements in WM performance. These results delineate a process of functional maturation of the executive system, and suggest that this process allows for the improvement of cognitive capability seen during adolescence.
Proceedings of the National Academy of Sciences of the United States of America | 2014
Theodore D. Satterthwaite; Russell T. Shinohara; Daniel H. Wolf; Ryan Hopson; Mark A. Elliott; Simon N. Vandekar; Kosha Ruparel; Monica E. Calkins; David R. Roalf; Efstathios D. Gennatas; Chad R. Jackson; Guray Erus; Karthik Prabhakaran; Christos Davatzikos; John A. Detre; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur
Significance Blood perfusion is a fundamental property of brain physiology and is known to be higher in adult females than in males. However, it is unknown when such a sex difference emerges during the lifespan, or what biological processes may cause it. In the largest study of brain perfusion yet reported, we establish for the first time to our knowledge that patterns of development of cerebral perfusion during adolescence are markedly different in males and females, and such differences are attributable in part to the effects of puberty. These results may have important implications for neuropsychiatric disorders with adolescent onset and strong gender disparities, such as mood disorders, anxiety disorders, and schizophrenia. Puberty is the defining biological process of adolescent development, yet its effects on fundamental properties of brain physiology such as cerebral blood flow (CBF) have never been investigated. Capitalizing on a sample of 922 youths ages 8–22 y imaged using arterial spin labeled MRI as part of the Philadelphia Neurodevelopmental Cohort, we studied normative developmental differences in cerebral perfusion in males and females, as well as specific associations between puberty and CBF. Males and females had conspicuously divergent nonlinear trajectories in CBF evolution with development as modeled by penalized splines. Seventeen brain regions, including hubs of the executive and default mode networks, showed a robust nonlinear age-by-sex interaction that surpassed Bonferroni correction. Notably, within these regions the decline in CBF was similar between males and females in early puberty and only diverged in midpuberty, with CBF actually increasing in females. Taken together, these results delineate sex-specific growth curves for CBF during youth and for the first time to our knowledge link such differential patterns of development to the effects of puberty.
NeuroImage | 2016
David R. Roalf; Megan Quarmley; Mark A. Elliott; Theodore D. Satterthwaite; Simon N. Vandekar; Kosha Ruparel; Efstathios D. Gennatas; Monica E. Calkins; Tyler M. Moore; Ryan Hopson; Karthik Prabhakaran; Chad T. Jackson; Ragini Verma; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur
BACKGROUND Diffusion tensor imaging (DTI) is applied in investigation of brain biomarkers for neurodevelopmental and neurodegenerative disorders. However, the quality of DTI measurements, like other neuroimaging techniques, is susceptible to several confounding factors (e.g., motion, eddy currents), which have only recently come under scrutiny. These confounds are especially relevant in adolescent samples where data quality may be compromised in ways that confound interpretation of maturation parameters. The current study aims to leverage DTI data from the Philadelphia Neurodevelopmental Cohort (PNC), a sample of 1601 youths with ages of 8-21 who underwent neuroimaging, to: 1) establish quality assurance (QA) metrics for the automatic identification of poor DTI image quality; 2) examine the performance of these QA measures in an external validation sample; 3) document the influence of data quality on developmental patterns of typical DTI metrics. METHODS All diffusion-weighted images were acquired on the same scanner. Visual QA was performed on all subjects completing DTI; images were manually categorized as Poor, Good, or Excellent. Four image quality metrics were automatically computed and used to predict manual QA status: Mean voxel intensity outlier count (MEANVOX), Maximum voxel intensity outlier count (MAXVOX), mean relative motion (MOTION) and temporal signal-to-noise ratio (TSNR). Classification accuracy for each metric was calculated as the area under the receiver-operating characteristic curve (AUC). A threshold was generated for each measure that best differentiated visual QA status and applied in a validation sample. The effects of data quality on sensitivity to expected age effects in this developmental sample were then investigated using the traditional MRI diffusion metrics: fractional anisotropy (FA) and mean diffusivity (MD). Finally, our method of QA is compared with DTIPrep. RESULTS TSNR (AUC=0.94) best differentiated Poor data from Good and Excellent data. MAXVOX (AUC=0.88) best differentiated Good from Excellent DTI data. At the optimal threshold, 88% of Poor data and 91% Good/Excellent data were correctly identified. Use of these thresholds on a validation dataset (n=374) indicated high accuracy. In the validation sample 83% of Poor data and 94% of Excellent data was identified using thresholds derived from the training sample. Both FA and MD were affected by the inclusion of poor data in an analysis of an age, sex and race matched comparison sample. In addition, we show that the inclusion of poor data results in significant attenuation of the correlation between diffusion metrics (FA and MD) and age during a critical neurodevelopmental period. We find higher correspondence between our QA method and DTIPrep for Poor data, but we find our method to be more robust for apparently high-quality images. CONCLUSION Automated QA of DTI can facilitate large-scale, high-throughput quality assurance by reliably identifying both scanner and subject induced imaging artifacts. The results present a practical example of the confounding effects of artifacts on DTI analysis in a large population-based sample, and suggest that estimates of data quality should not only be reported but also accounted for in data analysis, especially in studies of development.
Annals of Neurology | 2013
Raquel C. Gardner; Adam L. Boxer; Andrew Trujillo; Jacob Mirsky; Christine C. Guo; Efstathios D. Gennatas; Hilary W. Heuer; Eric M. Fine; Juan Zhou; Joel H. Kramer; Bruce L. Miller; William W. Seeley
Progressive supranuclear palsy (PSP) has been conceptualized as a large‐scale network disruption, but the specific network targeted has not been fully characterized. We sought to delineate the affected network in patients with clinical PSP.
American Journal of Psychiatry | 2016
Sheila Shanmugan; Daniel H. Wolf; Monica E. Calkins; Tyler M. Moore; Kosha Ruparel; Ryan Hopson; Simon N. Vandekar; David R. Roalf; Mark A. Elliott; Chad R. Jackson; Efstathios D. Gennatas; Ellen Leibenluft; Daniel S. Pine; Russell T. Shinohara; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur; Theodore D. Satterthwaite
OBJECTIVE Disruption of executive function is present in many neuropsychiatric disorders. However, determining the specificity of executive dysfunction across these disorders is challenging given high comorbidity of conditions. Here the authors investigate executive system deficits in association with dimensions of psychiatric symptoms in youth using a working memory paradigm. The authors hypothesize that common and dissociable patterns of dysfunction would be present. METHOD The authors studied 1,129 youths who completed a fractal n-back task during functional magnetic resonance imaging at 3-T as part of the Philadelphia Neurodevelopmental Cohort. Factor scores of clinical psychopathology were calculated using an item-wise confirmatory bifactor model, describing overall psychopathology as well as four orthogonal dimensions of symptoms: anxious-misery (mood and anxiety), behavioral disturbance (attention deficit hyperactivity disorder and conduct disorder), psychosis-spectrum symptoms, and fear (phobias). The effect of psychopathology dimensions on behavioral performance and executive system recruitment (2-back > 0-back) was examined using both multivariate (matrix regression) and mass-univariate (linear regression) analyses. RESULTS Overall psychopathology was associated with both abnormal multivariate patterns of activation and a failure to activate executive regions within the cingulo-opercular control network, including the frontal pole, cingulate cortex, and anterior insula. In addition, psychosis-spectrum symptoms were associated with hypoactivation of the left dorsolateral prefrontal cortex, whereas behavioral symptoms were associated with hypoactivation of the frontoparietal cortex and cerebellum. In contrast, anxious-misery symptoms were associated with widespread hyperactivation of the executive network. CONCLUSIONS These findings provide novel evidence that common and dissociable deficits within the brains executive system are present in association with dimensions of psychopathology in youth.
Proceedings of the National Academy of Sciences of the United States of America | 2016
Christine C. Guo; Virginia E. Sturm; Juan Zhou; Efstathios D. Gennatas; Andrew Trujillo; Alice Y. Hua; Richard Crawford; Lara Stables; Joel H. Kramer; Katherine P. Rankin; Robert W. Levenson; Howard J. Rosen; Bruce L. Miller; William W. Seeley
Significance Brain–body interactions are fundamental to physical and mental health. Here, we used a unique brain lesion model to elucidate the neural localization and lateralization of cerebro-cardiac control. Our data revealed that the salience network, an intrinsic connectivity network anchored by the anterior insula and cingulate, is crucial for maintaining basal parasympathetic outflow. Specifically, dominant hemisphere-predominant salience network damage undermined parasympathetic control of the heart. The findings suggest that balanced functional integrity of both hemispheres is vital to maintaining bodily homeostasis. The brain continuously influences and perceives the physiological condition of the body. Related cortical representations have been proposed to shape emotional experience and guide behavior. Although previous studies have identified brain regions recruited during autonomic processing, neurological lesion studies have yet to delineate the regions critical for maintaining autonomic outflow. Even greater controversy surrounds hemispheric lateralization along the parasympathetic–sympathetic axis. The behavioral variant of frontotemporal dementia (bvFTD), featuring progressive and often asymmetric degeneration that includes the frontoinsular and cingulate cortices, provides a unique lesion model for elucidating brain structures that control autonomic tone. Here, we show that bvFTD is associated with reduced baseline cardiac vagal tone and that this reduction correlates with left-lateralized functional and structural frontoinsular and cingulate cortex deficits and with reduced agreeableness. Our results suggest that networked brain regions in the dominant hemisphere are critical for maintaining an adaptive level of baseline parasympathetic outflow.
The Journal of Neuroscience | 2017
Efstathios D. Gennatas; Brian B. Avants; Daniel H. Wolf; Theodore D. Satterthwaite; Kosha Ruparel; Rastko Ciric; Hakon Hakonarson; Raquel E. Gur; Ruben C. Gur
Developmental structural neuroimaging studies in humans have long described decreases in gray matter volume (GMV) and cortical thickness (CT) during adolescence. Gray matter density (GMD), a measure often assumed to be highly related to volume, has not been systematically investigated in development. We used T1 imaging data collected on the Philadelphia Neurodevelopmental Cohort to study age-related effects and sex differences in four regional gray matter measures in 1189 youths ranging in age from 8 to 23 years. Custom T1 segmentation and a novel high-resolution gray matter parcellation were used to extract GMD, GMV, gray matter mass (GMM; defined as GMD × GMV), and CT from 1625 brain regions. Nonlinear models revealed that each modality exhibits unique age-related effects and sex differences. While GMV and CT generally decrease with age, GMD increases and shows the strongest age-related effects, while GMM shows a slight decline overall. Females have lower GMV but higher GMD than males throughout the brain. Our findings suggest that GMD is a prime phenotype for the assessment of brain development and likely cognition and that periadolescent gray matter loss may be less pronounced than previously thought. This work highlights the need for combined quantitative histological MRI studies. SIGNIFICANCE STATEMENT This study demonstrates that different MRI-derived gray matter measures show distinct age and sex effects and should not be considered equivalent but complementary. It is shown for the first time that gray matter density increases from childhood to young adulthood, in contrast with gray matter volume and cortical thickness, and that females, who are known to have lower gray matter volume than males, have higher density throughout the brain. A custom preprocessing pipeline and a novel high-resolution parcellation were created to analyze brain scans of 1189 youths collected as part of the Philadelphia Neurodevelopmental Cohort. A clear understanding of normal structural brain development is essential for the examination of brain–behavior relationships, the study of brain disease, and, ultimately, clinical applications of neuroimaging.
Biological Psychiatry | 2016
Antonia N. Kaczkurkin; Tyler M. Moore; Kosha Ruparel; Rastko Ciric; Monica E. Calkins; Russell T. Shinohara; Mark A. Elliott; Ryan Hopson; David R. Roalf; Simon N. Vandekar; Efstathios D. Gennatas; Daniel H. Wolf; J. Cobb Scott; Daniel S. Pine; Ellen Leibenluft; John A. Detre; Edna B. Foa; Raquel E. Gur; Ruben C. Gur; Theodore D. Satterthwaite
BACKGROUND Adolescence is a critical period for emotional maturation and is a time when clinically significant symptoms of anxiety and depression increase, particularly in females. However, few studies relate developmental differences in symptoms of anxiety and depression to brain development. Cerebral blood flow is one brain phenotype that is known to have marked developmental sex differences. METHODS We investigated whether developmental sex differences in cerebral blood flow mediated sex differences in anxiety and depression symptoms by capitalizing on a large sample of 875 youths who completed cross-sectional imaging as part of the Philadelphia Neurodevelopmental Cohort. Perfusion was quantified on a voxelwise basis using arterial spin-labeled magnetic resonance imaging at 3T. Perfusion images were related to trait and state anxiety using general additive models with penalized splines, while controlling for gray matter density on a voxelwise basis. Clusters found to be related to anxiety were evaluated for interactions with age, sex, and puberty. RESULTS Trait anxiety was associated with elevated perfusion in a network of regions including the amygdala, anterior insula, and fusiform cortex, even after accounting for prescan state anxiety. Notably, these relationships strengthened with age and the transition through puberty. Moreover, higher trait anxiety in postpubertal females was mediated by elevated perfusion of the left amygdala. CONCLUSIONS Taken together, these results demonstrate that differences in the evolution of cerebral perfusion during adolescence may be a critical element of the affective neurobiological characteristics underlying sex differences in anxiety and mood symptoms.