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Dive into the research topics where Ekaterina V. Gubarkova is active.

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Featured researches published by Ekaterina V. Gubarkova.


Biomedical Optics Express | 2015

Differential diagnosis of human bladder mucosa pathologies in vivo with cross-polarization optical coherence tomography

Elena B. Kiseleva; Mikhail Yu. Kirillin; Felix I. Feldchtein; Alex Vitkin; Ekaterina A. Sergeeva; Elena V. Zagaynova; Olga Streltzova; Boris E. Shakhov; Ekaterina V. Gubarkova; Natalia D. Gladkova

Quantitative image analysis and parameter extraction using a specific implementation of polarization-sensitive optical coherence tomography (OCT) provides differential diagnosis of mucosal pathologies in in-vivo human bladders. We introduce a cross-polarization (CP) OCT image metric called Integral Depolarization Factor (IDF) to enable automatic diagnosis of bladder conditions (assessment the functional state of collagen fibers). IDF-based diagnostic accuracy of identification of the severe fibrosis of normal bladder mucosa is 79%; recurrence of carcinoma on the post-operative scar is 97%; and differentiation between neoplasia and acute inflammation is 75%. The promising potential of CP OCT combined with image analysis in human urology is thus demonstrated in vivo.


Journal of Biophotonics | 2013

Evaluation of oral mucosa collagen condition with cross-polarization optical coherence tomography

Natalia D. Gladkova; Elena B. Kiseleva; Natalia Robakidze; Irina V. Balalaeva; Maria Karabut; Ekaterina V. Gubarkova; Felix I. Feldchtein

The goal of the research was analysis of the effect of collagen condition in formation of cross-polarized CP OCT images. We used of the CP OCT technique for studying collagen condition on an example of oral mucosa. Special histologic picrosirius red (PSR) staining of cheek mucosa specimens was used with subsequent assessing of the result of collagen staining in polarized light. High correlation (r = 0.692, p = 0.0001) between OCT signal standard deviation (SD) in cross-polarized images and brightness of PSR stained collagen fibers in cheek mucosa specimens was demonstrated in patients with inflammatory intestine and oral mucosa diseases. We have found that the OCT signal SD in cross-polarized images reflects two boundary conditions of collagen disorganization, namely, loss of fiber properties at active inflammation which attenuates the signal and fibrosis that occurs due to synthesis of a new remodeled collagen which amplifies the OCT signal.


Journal of Biophotonics | 2013

Combined use of fluorescence cystoscopy and cross-polarization OCT for diagnosis of bladder cancer and correlation with immunohistochemical markers.

Natalia D. Gladkova; Elena B. Kiseleva; Olga Streltsova; Natalia Prodanets; Ludmila B. Snopova; Maria Karabut; Ekaterina V. Gubarkova; Elena V. Zagaynova

The combined use of fluorescence cystoscopy and cross-polarization optical coherence tomography (CP OCT) with quantitative estimation of the OCT signal was assessed in 92 bladder zones. It demonstrated the diagnostic accuracy in detecting superficial bladder cancer of 93.6%, sensitivity 96.4%, specificity 92.1%, positive predictive value 87% and negative predictive value 97.9%. Quantitative estimation of OCT signal standard deviation in cross-polarization (CP OCT SD index) makes the visual criteria of CP OCT image assessment more objective. The level of CP OCT SD index for diagnosing superficial bladder cancer, including cancer in situ, was 4.32 dB and lower. When tumor is located on a postoperative scar, CP OCT SD index may be higher than the threshold level of 4.32 dB due to strong scattering and depolarization in scar fibrous tissue. A high inverse correlation was found between CP OCT SD index and the level expressed by p63, Ki-67, p53, CD44v6 markers.


Journal of Biophotonics | 2016

Multi-modal optical imaging characterization of atherosclerotic plaques

Ekaterina V. Gubarkova; Varvara V. Dudenkova; Felix I. Feldchtein; Lidia B. Timofeeva; Elena B. Kiseleva; Sergei S. Kuznetsov; Boris E. Shakhov; Alexander A. Moiseev; Valentin M. Gelikonov; Gregory V. Gelikonov; Alex Vitkin; Natalia D. Gladkova

We combined cross-polarization optical coherence tomography (CP OCT) and non-linear microscopy based on second harmonic generation (SHG) and two-photon-excited fluorescence (2PEF) to assess collagen and elastin fibers and other vascular structures in the development of atherosclerosis, including identification of vulnerable plaques, which remains an important clinical problem and imaging application. CP OCTs ability to visualize tissue birefringence and cross-scattering adds new information about the microstructure and composition of the plaque. However its interpretation can be ambiguous, because backscattering contrast may have a similar appearance to the birefringence related fringes. Our results represent a step towards minimally invasive characterization and monitoring of different stages of atherosclerosis, including vulnerable plaques. CP OCT image of intimal thickening in the human coronary artery. The dark stripe in the cross-polarization channel (arrow) is a polarization fringe related to the phase retardation between two eigen polarization states. It is histologically located in the area of the lipid pool, however this stripe is a polarization artifact, rather than direct visualization of the lipid pool.


Journal of Innovative Optical Health Sciences | 2017

Practical obstacles and their mitigation strategies in compressional optical coherence elastography of biological tissues

Vladimir Yu. Zaitsev; Alexandr L. Matveyev; Lev A. Matveev; Ekaterina V. Gubarkova; Alexandr A. Sovetsky; Marina A. Sirotkina; Grigory V. Gelikonov; Elena V. Zagaynova; Natalia D. Gladkova; Alex Vitkin

In this paper, we point out some practical obstacles arising in realization of compressional optical coherence elastography (OCE) that have not attracted sufficient attention previously. Specifically, we discuss (i) complications in quantification of the Young modulus of tissues related to partial adhesion between the OCE probe and soft intervening reference layer sensor, (ii) distorting influence of tissue surface curvature/corrugation on the subsurface strain distribution mapping, (iii) ways of signal-to-noise ratio (SNR) enhancement in OCE strain mapping when periodic averaging is not realized, and (iv) potentially significant influence of tissue elastic nonlinearity on quantification of its stiffness. Potential practical approaches to mitigate the effects of these complications are also described.


Journal of Biomedical Optics | 2016

Quantitative evaluation of atherosclerotic plaques using cross-polarization optical coherence tomography, nonlinear, and atomic force microscopy

Ekaterina V. Gubarkova; Mikhail Kirillin; Varvara V. Dudenkova; P. S. Timashev; Svetlana L. Kotova; Elena B. Kiseleva; Lidia B. Timofeeva; Galina V. Belkova; Anna B. Solovieva; Alexander A. Moiseev; Gregory V. Gelikonov; Ilya I. Fiks; Felix I. Feldchtein; Natalia D. Gladkova

Abstract. A combination of approaches to the image analysis in cross-polarization optical coherence tomography (CP OCT) and high-resolution imaging by nonlinear microscopy and atomic force microscopy (AFM) at the different stages of atherosclerotic plaque development is studied. This combination allowed us to qualitatively and quantitatively assess the disorganization of collagen in the atherosclerotic arterial tissue (reduction and increase of CP backscatter), at the fiber (change of the geometric distribution of fibers in the second-harmonic generation microscopy images) and fibrillar (violation of packing and different nature of a basket-weave network of fibrils in the AFM images) organization levels. The calculated CP channel-related parameters are shown to have a statistically significant difference between stable and unstable (also called vulnerable) plaques, and hence, CP OCT could be a potentially powerful, minimally invasive method for vulnerable plaques detection.


Proceedings of SPIE | 2017

Multimodal optical coherence tomography for in vivo imaging of brain tissue structure and microvascular network at glioblastoma

K.S. Yashin; Elena B. Kiseleva; Ekaterina V. Gubarkova; Lev A. Matveev; Maria Karabut; Vadim V. Elagin; Marina A. Sirotkina; Igor A. Medyanik; L. Y. Kravets; Natalia D. Gladkova

In the case of infiltrative brain tumors the surgeon faces difficulties in determining their boundaries to achieve total resection. The aim of the investigation was to evaluate the performance of multimodal OCT (MM OCT) for differential diagnostics of normal brain tissue and glioma using an experimental model of glioblastoma. The spectral domain OCT device that was used for the study provides simultaneously two modes: cross-polarization and microangiographic OCT. The comparative analysis of the both OCT modalities images from tumorous and normal brain tissue areas concurrently with histologic correlation shows certain difference between when accordingly to morphological and microvascular tissue features.


Proceedings of SPIE | 2016

Characterization of atherosclerotic plaques by cross-polarization optical coherence tomography

Ekaterina V. Gubarkova; Varvara V. Dudenkova; Felix I. Feldchtein; Lidia B. Timofeeva; Elena B. Kiseleva; Sergei S. Kuznetsov; Alexander A. Moiseev; Gregory V. Gelikonov; Alex Vitkin; Natalia D. Gladkova

We combined cross-polarization optical coherence tomography (CP OCT) and non-linear microscopy based on second harmonic generation (SHG) and two-photon-excited fluorescence (2PEF) to assess collagen and elastin fibers in the development of the atherosclerotic plaque (AP). The study shows potential of CP OCT for the assessment of collagen and elastin fibers condition in atherosclerotic arteries. Specifically, the additional information afforded by CP OCT, related to birefringence and cross-scattering properties of arterial tissues, may improve the robustness and accuracy of assessment about the microstructure and composition of the plaque for different stages of atherosclerosis.


Seventh International Conference on Lasers in Medicine | 2018

Two-dimensional OCT-relaxography of collagenous tissues

Lev A. Matveev; Dmitry A. Karashtin; Dmitry V. Shabanov; Grigory V. Gelikonov; Valentin M. Gelikonov; Elena V. Zagaynova; Natalia D. Gladkova; Alex Vitkin; Vladimir Yu. Zaitsev; Alexander A. Sovetsky; Alexander L. Matveyev; Ekaterina V. Gubarkova; Marina A. Sirotkina; Irina N. Druzhkova

Collageneus tissues manifest strongly pronounced viscoelastic behavior. Namely, viscosity leads to time-dependence of the deformation processes. This concerns both compression (loading) and unloading of the tissue. Both processes can be characterized by a relaxation time - the time during which the strain changes e-times. We demonstrate the applicability of the OCT-based 2D relaxography to characterize local relaxation time of collageneous tissues. The developed technique can be used for further investigation of the viscoelastic properties of healthy and pathological collageneous tissues.


Biophotonics: Photonic Solutions for Better Health Care VI | 2018

OCT-based characterization of the nonlinear properties of biological tissues in various states

Alexandr A. Sovetsky; Lev A. Matveev; Ekaterina V. Gubarkova; Alexander L. Matveyev; Marina A. Sirotkina; Natalia D. Gladkova; Vladimir Yu. Zaitsev

Soft biological tissues manifest strongly pronounced nonlinear elastic behavior. Namely, the Young modulus for some tissues strongly depends on the applied stress. This property can be evaluated by compressional OCT elastography. We demonstrate the evaluation of nonlinear elastic properties on the samples of coronary arteries, breast cancer and cornea. The developed technique can be used for further investigation of the nonlinear properties of healthy and pathological tissues.

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Elena B. Kiseleva

Nizhny Novgorod State Medical Academy

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Lev A. Matveev

Nizhny Novgorod State Medical Academy

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Marina A. Sirotkina

Nizhny Novgorod State Medical Academy

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Elena V. Zagaynova

Nizhny Novgorod State Medical Academy

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