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Dive into the research topics where Elena Sokolova is active.

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Featured researches published by Elena Sokolova.


PLOS ONE | 2016

Statistical Evidence Suggests that Inattention Drives Hyperactivity/Impulsivity in Attention Deficit-Hyperactivity Disorder

Elena Sokolova; Perry Groot; Tom Claassen; Kimm J. E. van Hulzen; Jeffrey C. Glennon; Barbara Franke; Tom Heskes; Jan K. Buitelaar

Background Numerous factor analytic studies consistently support a distinction between two symptom domains of attention-deficit/hyperactivity disorder (ADHD), inattention and hyperactivity/impulsivity. Both dimensions show high internal consistency and moderate to strong correlations with each other. However, it is not clear what drives this strong correlation. The aim of this paper is to address this issue. Method We applied a sophisticated approach for causal discovery on three independent data sets of scores of the two ADHD dimensions in NeuroIMAGE (total N = 675), ADHD-200 (N = 245), and IMpACT (N = 164), assessed by different raters and instruments, and further used information on gender or a genetic risk haplotype. Results In all data sets we found strong statistical evidence for the same pattern: the clear dependence between hyperactivity/impulsivity symptom level and an established genetic factor (either gender or risk haplotype) vanishes when one conditions upon inattention symptom level. Under reasonable assumptions, e.g., that phenotypes do not cause genotypes, a causal model that is consistent with this pattern contains a causal path from inattention to hyperactivity/impulsivity. Conclusions The robust dependency cancellation observed in three different data sets suggests that inattention is a driving factor for hyperactivity/impulsivity. This causal hypothesis can be further validated in intervention studies. Our model suggests that interventions that affect inattention will also have an effect on the level of hyperactivity/impulsivity. On the other hand, interventions that affect hyperactivity/impulsivity would not change the level of inattention. This causal model may explain earlier findings on heritable factors causing ADHD reported in the study of twins with learning difficulties.


American Journal of Medical Genetics | 2015

Causal discovery in an adult ADHD data set suggests indirect link between DAT1 genetic variants and striatal brain activation during reward processing

Elena Sokolova; Martine Hoogman; Perry Groot; Tom Claassen; Alejandro Arias Vasquez; Jan K. Buitelaar; Barbara Franke; Tom Heskes

Attention‐deficit/hyperactivity disorder (ADHD) is a common and highly heritable disorder affecting both children and adults. One of the candidate genes for ADHD is DAT1, encoding the dopamine transporter. In an attempt to clarify its mode of action, we assessed brain activity during the reward anticipation phase of the Monetary Incentive Delay (MID) task in a functional MRI paradigm in 87 adult participants with ADHD and 77 controls (average age 36.5 years). The MID task activates the ventral striatum, where DAT1 is most highly expressed. A previous analysis based on standard statistical techniques did not show any significant dependencies between a variant in the DAT1 gene and brain activation [Hoogman et al. (2013); Neuropsychopharm 23:469–478]. Here, we used an alternative method for analyzing the data, that is, causal modeling. The Bayesian Constraint‐based Causal Discovery (BCCD) algorithm [Claassen and Heskes (2012); Proceedings of the 28th Conference on Uncertainty in Artificial Intelligence] is able to find direct and indirect dependencies between variables, determines the strength of the dependencies, and provides a graphical visualization to interpret the results. Through BCCD one gets an opportunity to consider several variables together and to infer causal relations between them. Application of the BCCD algorithm confirmed that there is no evidence of a direct link between DAT1 genetic variability and brain activation, but suggested an indirect link mediated through inattention symptoms and diagnostic status of ADHD. Our finding of an indirect link of DAT1 with striatal activity during reward anticipation might explain existing discrepancies in the current literature. Further experiments should confirm this hypothesis.


probabilistic graphical models | 2014

Causal Discovery from Databases with Discrete and Continuous Variables

Elena Sokolova; Perry Groot; Tom Claassen; Tom Heskes

Bayesian Constraint-based Causal Discovery (BCCD) is a state-of-the-art method for robust causal discovery in the presence of latent variables. It combines probabilistic estimation of Bayesian networks over subsets of variables with a causal logic to infer causal statements. Currently BCCD is limited to discrete or Gaussian variables. Most of the real-world data, however, contain a mixture of discrete and continuous variables. We here extend BCCD to be able to handle combinations of discrete and continuous variables, under the assumption that the relations between the variables are monotonic. To this end, we propose a novel method for the efficient computation of BIC scores for hybrid Bayesian networks. We demonstrate the accuracy and efficiency of our approach for causal discovery on simulated data as well as on real-world data from the ADHD-200 competition.


Journal of Autism and Developmental Disorders | 2017

A Causal and Mediation Analysis of the Comorbidity Between Attention Deficit Hyperactivity Disorder (ADHD) and Autism Spectrum Disorder (ASD)

Elena Sokolova; Anoek M. Oerlemans; Nanda N. J. Rommelse; Perry Groot; Catharina A. Hartman; Jeffrey C. Glennon; Tom Claassen; Tom Heskes; Jan K. Buitelaar

Autism spectrum disorder (ASD) and Attention-deficit/hyperactivity disorder (ADHD) are often comorbid. The purpose of this study is to explore the relationships between ASD and ADHD symptoms by applying causal modeling. We used a large phenotypic data set of 417 children with ASD and/or ADHD, 562 affected and unaffected siblings, and 414 controls, to infer a structural equation model using a causal discovery algorithm. Three distinct pathways between ASD and ADHD were identified: (1) from impulsivity to difficulties with understanding social information, (2) from hyperactivity to stereotypic, repetitive behavior, (3) a pairwise pathway between inattention, difficulties with understanding social information, and verbal IQ. These findings may inform future studies on understanding the pathophysiological mechanisms behind the overlap between ASD and ADHD.


international conference on computational linguistics | 2003

QGen: generation module for the register restricted InBASE system

Michael V. Boldasov; Elena Sokolova

In this paper we present our investigations of constructing of a generation module for the InBASE system - a commercially oriented system for understanding of natural language queries to a Data Base. The initial prototype of the module re-generates the user query from the internal OQL representation into a natural language text presented in the form of extended nominal group. We discuss the main principles and methods of the organization of the generation module and peculiarities of the approaches we use for the knowledge representation as well as at planning and realization phases of generation. The initial prototype demonstrates direct transition from the OQL register specific representation to morphologically marked up structured representation of the query text. Directions of the further investigations are also discussed in the article.


text speech and dialogue | 2002

User Query Understanding by the InBASE System as a Source for a Multilingual NL Generation Module

Michael V. Boldasov; Elena Sokolova; Michael G. Malkovsky

In the paper we discuss the NL generation module of InBASE system - the system for understanding of NL queries to data bases. This module generates a new NL-query from the internal InBASE representation of user query. During the planning phase a linearly positioned query representation is constructed. The positions first bear conceptual information, to be followed by syntactic information. The realization phase deals with NL means to express the concepts (objects, attributes, values, relations between objects and attributes). The NL generation module is conceived as the first step from a one way question - answering system which is the present state of InBASE, to a larger-scale information system capable of communicating with the user in various areas.


knowledge discovery and data mining | 2017

Handling hybrid and missing data in constraint-based causal discovery to study the etiology of ADHD

Elena Sokolova; Daniel von Rhein; Jilly Naaijen; Perry Groot; Tom Claassen; Jan K. Buitelaar; Tom Heskes

Causal discovery is an increasingly important method for data analysis in the field of medical research. In this paper, we consider two challenges in causal discovery that occur very often when working with medical data: a mixture of discrete and continuous variables and a substantial amount of missing values. To the best of our knowledge, there are no methods that can handle both challenges at the same time. In this paper, we develop a new method that can handle these challenges based on the assumption that data are missing at random and that continuous variables obey a non-paranormal distribution. We demonstrate the validity of our approach for causal discovery on simulated data as well as on two real-world data sets from a monetary incentive delay task and a reversal learning task. Our results help in the understanding of the etiology of attention-deficit/hyperactivity disorder (ADHD).


artificial intelligence in medicine in europe | 2015

Causal Discovery from Medical Data: Dealing with Missing Values and a Mixture of Discrete and Continuous Data

Elena Sokolova; Perry Groot; Tom Claassen; Daniel von Rhein; Jan K. Buitelaar; Tom Heskes

Causal discovery is an increasingly popular method for data analysis in the field of medical research. In this paper we consider two challenges in causal discovery that occur very often when working with medical data: a mixture of discrete and continuous variables and a substantial amount of missing values. To the best of our knowledge there are no methods that can handle both challenges at the same time. In this paper we develop a new method that can handle these challenges based on the assumption that data is missing completely at random and that variables obey a non-paranormal distribution. We demonstrate the validity of our approach for causal discovery for empiric data from a monetary incentive delay task. Our results may help to better understand the etiology of attention deficit-hyperactivity disorder (ADHD).


European Neuropsychopharmacology | 2018

Role of conduct problems in the relation between Attention-Deficit Hyperactivity disorder, substance use, and gaming

G.H. Schoenmacker; A.P. Groenman; Elena Sokolova; Jaap Oosterlaan; Nanda Rommelse; Herbert Roeyers; Robert D. Oades; Stephen V. Faraone; Barbara Franke; Tom Heskes; A. Arias Vasquez; Tom Claassen; Jan K. Buitelaar

Known comorbidities for Attention-Deficit Hyperactivity Disorder (ADHD) include conduct problems, substance use disorder and gaming. Comorbidity with conduct problems may increase the risk for substance use disorder and gaming in individuals with ADHD. The aim of the study was to build a causal model of the relationships between ADHD and comorbid conduct problems, and alcohol, nicotine, and other substance use, and gaming habits, while accounting for age and sex. We used a state-of-the-art causal discovery algorithm to analyze a case-only sample of 362 ADHD-diagnosed individuals in the ages 12-24 years. We found that conduct problem severity mediates between ADHD severity and nicotine use, but not with more severe alcohol or substance use. More severe ADHD-inattentive symptoms lead to more severe gaming habits. Furthermore, our model suggests that ADHD severity has no influence on severity of alcohol or other drug use. Our findings suggest that ADHD severity is a risk factor for nicotine use, and that this effect is fully mediated by conduct problem severity. Finally, ADHD-inattentive severity was a risk factor for gaming, suggesting that gaming dependence has a different causal pathway than substance dependence and should be treated differently. By identifying these intervention points, our model can aid both researchers and clinicians.


probabilistic graphical models | 2016

Computing Lower and Upper Bounds on the Probability of Causal Statements

Elena Sokolova; Martine Hoogman; Perry Groot; Tom Claassen; Tom Heskes

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Tom Claassen

Radboud University Nijmegen

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Tom Heskes

Radboud University Nijmegen

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Perry Groot

Radboud University Nijmegen

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Jan K. Buitelaar

Radboud University Nijmegen

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Barbara Franke

Radboud University Nijmegen

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Daniel von Rhein

Radboud University Nijmegen

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Jeffrey C. Glennon

Radboud University Nijmegen

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Martine Hoogman

Radboud University Nijmegen

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