Tom Claassen
Radboud University Nijmegen
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Publication
Featured researches published by Tom Claassen.
PLOS ONE | 2016
Elena Sokolova; Perry Groot; Tom Claassen; Kimm J. E. van Hulzen; Jeffrey C. Glennon; Barbara Franke; Tom Heskes; Jan K. Buitelaar
Background Numerous factor analytic studies consistently support a distinction between two symptom domains of attention-deficit/hyperactivity disorder (ADHD), inattention and hyperactivity/impulsivity. Both dimensions show high internal consistency and moderate to strong correlations with each other. However, it is not clear what drives this strong correlation. The aim of this paper is to address this issue. Method We applied a sophisticated approach for causal discovery on three independent data sets of scores of the two ADHD dimensions in NeuroIMAGE (total N = 675), ADHD-200 (N = 245), and IMpACT (N = 164), assessed by different raters and instruments, and further used information on gender or a genetic risk haplotype. Results In all data sets we found strong statistical evidence for the same pattern: the clear dependence between hyperactivity/impulsivity symptom level and an established genetic factor (either gender or risk haplotype) vanishes when one conditions upon inattention symptom level. Under reasonable assumptions, e.g., that phenotypes do not cause genotypes, a causal model that is consistent with this pattern contains a causal path from inattention to hyperactivity/impulsivity. Conclusions The robust dependency cancellation observed in three different data sets suggests that inattention is a driving factor for hyperactivity/impulsivity. This causal hypothesis can be further validated in intervention studies. Our model suggests that interventions that affect inattention will also have an effect on the level of hyperactivity/impulsivity. On the other hand, interventions that affect hyperactivity/impulsivity would not change the level of inattention. This causal model may explain earlier findings on heritable factors causing ADHD reported in the study of twins with learning difficulties.
American Journal of Medical Genetics | 2015
Elena Sokolova; Martine Hoogman; Perry Groot; Tom Claassen; Alejandro Arias Vasquez; Jan K. Buitelaar; Barbara Franke; Tom Heskes
Attention‐deficit/hyperactivity disorder (ADHD) is a common and highly heritable disorder affecting both children and adults. One of the candidate genes for ADHD is DAT1, encoding the dopamine transporter. In an attempt to clarify its mode of action, we assessed brain activity during the reward anticipation phase of the Monetary Incentive Delay (MID) task in a functional MRI paradigm in 87 adult participants with ADHD and 77 controls (average age 36.5 years). The MID task activates the ventral striatum, where DAT1 is most highly expressed. A previous analysis based on standard statistical techniques did not show any significant dependencies between a variant in the DAT1 gene and brain activation [Hoogman et al. (2013); Neuropsychopharm 23:469–478]. Here, we used an alternative method for analyzing the data, that is, causal modeling. The Bayesian Constraint‐based Causal Discovery (BCCD) algorithm [Claassen and Heskes (2012); Proceedings of the 28th Conference on Uncertainty in Artificial Intelligence] is able to find direct and indirect dependencies between variables, determines the strength of the dependencies, and provides a graphical visualization to interpret the results. Through BCCD one gets an opportunity to consider several variables together and to infer causal relations between them. Application of the BCCD algorithm confirmed that there is no evidence of a direct link between DAT1 genetic variability and brain activation, but suggested an indirect link mediated through inattention symptoms and diagnostic status of ADHD. Our finding of an indirect link of DAT1 with striatal activity during reward anticipation might explain existing discrepancies in the current literature. Further experiments should confirm this hypothesis.
probabilistic graphical models | 2014
Elena Sokolova; Perry Groot; Tom Claassen; Tom Heskes
Bayesian Constraint-based Causal Discovery (BCCD) is a state-of-the-art method for robust causal discovery in the presence of latent variables. It combines probabilistic estimation of Bayesian networks over subsets of variables with a causal logic to infer causal statements. Currently BCCD is limited to discrete or Gaussian variables. Most of the real-world data, however, contain a mixture of discrete and continuous variables. We here extend BCCD to be able to handle combinations of discrete and continuous variables, under the assumption that the relations between the variables are monotonic. To this end, we propose a novel method for the efficient computation of BIC scores for hybrid Bayesian networks. We demonstrate the accuracy and efficiency of our approach for causal discovery on simulated data as well as on real-world data from the ADHD-200 competition.
Journal of Autism and Developmental Disorders | 2017
Elena Sokolova; Anoek M. Oerlemans; Nanda N. J. Rommelse; Perry Groot; Catharina A. Hartman; Jeffrey C. Glennon; Tom Claassen; Tom Heskes; Jan K. Buitelaar
Autism spectrum disorder (ASD) and Attention-deficit/hyperactivity disorder (ADHD) are often comorbid. The purpose of this study is to explore the relationships between ASD and ADHD symptoms by applying causal modeling. We used a large phenotypic data set of 417 children with ASD and/or ADHD, 562 affected and unaffected siblings, and 414 controls, to infer a structural equation model using a causal discovery algorithm. Three distinct pathways between ASD and ADHD were identified: (1) from impulsivity to difficulties with understanding social information, (2) from hyperactivity to stereotypic, repetitive behavior, (3) a pairwise pathway between inattention, difficulties with understanding social information, and verbal IQ. These findings may inform future studies on understanding the pathophysiological mechanisms behind the overlap between ASD and ADHD.
knowledge discovery and data mining | 2017
Elena Sokolova; Daniel von Rhein; Jilly Naaijen; Perry Groot; Tom Claassen; Jan K. Buitelaar; Tom Heskes
Causal discovery is an increasingly important method for data analysis in the field of medical research. In this paper, we consider two challenges in causal discovery that occur very often when working with medical data: a mixture of discrete and continuous variables and a substantial amount of missing values. To the best of our knowledge, there are no methods that can handle both challenges at the same time. In this paper, we develop a new method that can handle these challenges based on the assumption that data are missing at random and that continuous variables obey a non-paranormal distribution. We demonstrate the validity of our approach for causal discovery on simulated data as well as on two real-world data sets from a monetary incentive delay task and a reversal learning task. Our results help in the understanding of the etiology of attention-deficit/hyperactivity disorder (ADHD).
artificial intelligence in medicine in europe | 2015
Elena Sokolova; Perry Groot; Tom Claassen; Daniel von Rhein; Jan K. Buitelaar; Tom Heskes
Causal discovery is an increasingly popular method for data analysis in the field of medical research. In this paper we consider two challenges in causal discovery that occur very often when working with medical data: a mixture of discrete and continuous variables and a substantial amount of missing values. To the best of our knowledge there are no methods that can handle both challenges at the same time. In this paper we develop a new method that can handle these challenges based on the assumption that data is missing completely at random and that variables obey a non-paranormal distribution. We demonstrate the validity of our approach for causal discovery for empiric data from a monetary incentive delay task. Our results may help to better understand the etiology of attention deficit-hyperactivity disorder (ADHD).
Clinical Neuropsychologist | 2017
Marjolein J. A. M. van Dijk; Tom Claassen; Christiany Suwartono; William M. van der Veld; Paul T. van der Heijden; M.P.H. Hendriks
Abstract Objective: Since the publication of the WAIS–IV in the U.S. in 2008, efforts have been made to explore the structural validity by applying factor analysis to various samples. This study aims to achieve a more fine-grained understanding of the structure of the Dutch language version of the WAIS–IV (WAIS–IV–NL) by applying an alternative analysis based on causal modeling in addition to confirmatory factor analysis (CFA). The Bayesian Constraint-based Causal Discovery (BCCD) algorithm learns underlying network structures directly from data and assesses more complex structures than is possible with factor analysis. Method: WAIS–IV–NL profiles of two clinical samples of 202 patients (i.e. patients with temporal lobe epilepsy and a mixed psychiatric outpatient group) were analyzed and contrasted with a matched control group (N = 202) selected from the Dutch standardization sample of the WAIS–IV–NL to investigate internal structure by means of CFA and BCCD. Results: With CFA, the four-factor structure as proposed by Wechsler demonstrates acceptable fit in all three subsamples. However, BCCD revealed three consistent clusters (verbal comprehension, visual processing, and processing speed) in all three subsamples. The combination of Arithmetic and Digit Span as a coherent working memory factor could not be verified, and Matrix Reasoning appeared to be isolated. Conclusions: With BCCD, some discrepancies from the proposed four-factor structure are exemplified. Furthermore, these results fit CHC theory of intelligence more clearly. Consistent clustering patterns indicate these results are robust. The structural causal discovery approach may be helpful in better interpreting existing tests, the development of new tests, and aid in diagnostic instruments.
European Neuropsychopharmacology | 2018
G.H. Schoenmacker; A.P. Groenman; Elena Sokolova; Jaap Oosterlaan; Nanda Rommelse; Herbert Roeyers; Robert D. Oades; Stephen V. Faraone; Barbara Franke; Tom Heskes; A. Arias Vasquez; Tom Claassen; Jan K. Buitelaar
Known comorbidities for Attention-Deficit Hyperactivity Disorder (ADHD) include conduct problems, substance use disorder and gaming. Comorbidity with conduct problems may increase the risk for substance use disorder and gaming in individuals with ADHD. The aim of the study was to build a causal model of the relationships between ADHD and comorbid conduct problems, and alcohol, nicotine, and other substance use, and gaming habits, while accounting for age and sex. We used a state-of-the-art causal discovery algorithm to analyze a case-only sample of 362 ADHD-diagnosed individuals in the ages 12-24 years. We found that conduct problem severity mediates between ADHD severity and nicotine use, but not with more severe alcohol or substance use. More severe ADHD-inattentive symptoms lead to more severe gaming habits. Furthermore, our model suggests that ADHD severity has no influence on severity of alcohol or other drug use. Our findings suggest that ADHD severity is a risk factor for nicotine use, and that this effect is fully mediated by conduct problem severity. Finally, ADHD-inattentive severity was a risk factor for gaming, suggesting that gaming dependence has a different causal pathway than substance dependence and should be treated differently. By identifying these intervention points, our model can aid both researchers and clinicians.
Bosch, A. van den;Heskes, T. (ed.), BENELEARN 2013: Proceedings of the 22nd Belgian-Dutch Conference on Machine Learning | 2013
Tom Claassen; Tom Heskes
uncertainty in artificial intelligence | 2013
Tom Claassen; Joris M. Mooij; Tom Heskes