Ellen Hines

Using Seabird Habitat Modeling to Inform Marine Spatial Planning in Central California’s National Marine Sanctuaries

Understanding seabird habitat preferences is critical to future wildlife conservation and threat mitigation in California. The objective of this study was to investigate drivers of seabird habitat selection within the Gulf of the Farallones and Cordell Bank National Marine Sanctuaries to identify areas for targeted conservation planning. We used seabird abundance data collected by the Applied California Current Ecosystem Studies Program (ACCESS) from 2004–2011. We used zero-inflated negative binomial regression to model species abundance and distribution as a function of near surface ocean water properties, distances to geographic features and oceanographic climate indices to identify patterns in foraging habitat selection. We evaluated seasonal, inter-annual and species-specific variability of at-sea distributions for the five most abundant seabirds nesting on the Farallon Islands: western gull (Larus occidentalis), common murre (Uria aalge), Cassin’s auklet (Ptychorampus aleuticus), rhinoceros auklet (Cerorhinca monocerata) and Brandt’s cormorant (Phalacrocorax penicillatus). The waters in the vicinity of Cordell Bank and the continental shelf east of the Farallon Islands emerged as persistent and highly selected foraging areas across all species. Further, we conducted a spatial prioritization exercise to optimize seabird conservation areas with and without considering impacts of current human activities. We explored three conservation scenarios where 10, 30 and 50 percent of highly selected, species-specific foraging areas would be conserved. We compared and contrasted results in relation to existing marine protected areas (MPAs) and the future alternative energy footprint identified by the California Ocean Uses Atlas. Our results show that the majority of highly selected seabird habitat lies outside of state MPAs where threats from shipping, oil spills, and offshore energy development remain. This analysis accentuates the need for innovative marine spatial planning efforts and provides a foundation on which to build more comprehensive zoning and management in California’s National Marine Sanctuaries.

Building Regional Threat-Based Networks for Estuaries in the Western United States

Estuaries are ecologically and economically valuable and have been highly degraded from both land and sea. Estuarine habitats in the coastal zone are under pressure from a range of human activities. In the United States and elsewhere, very few conservation plans focused on estuaries are regional in scope; fewer still address threats to estuary long term viability.We have compiled basic information about the spatial extent of threats to identify commonalities. To do this we classify estuaries into hierarchical networks that share similar threat characteristics using a spatial database (geodatabase) of threats to estuaries from land and sea in the western U.S.Our results show that very few estuaries in this region (16%) have no or minimal stresses from anthropogenic activity. Additionally, one quarter (25%) of all estuaries in this study have moderate levels of all threats. The small number of un-threatened estuaries is likely not representative of the ecological variability in the region and will require working to abate threats at others. We think the identification of these estuary groups can foster sharing best practices and coordination of conservation activities amongst estuaries in any geography.

Gaining traction: retreading the wheels of marine conservation.

A number of international treaties address the conservation of marine resources. The declining state of the worlds oceans suggests that these treaties are not succeeding and could use improvement. The Convention on International Trade in Endangered Species (CITES) is increasingly embracing the conservation of marine species. We examine the evolution of marine species protection under CITES and illuminate some of the mechanisms used and challenges faced in implementing CITES protection. We found that clarification is needed on when and where CITES applies and how CITES should work with other treaties and institutions. The Society for Conservation Biology (SCB) can contribute to increased effectiveness of CITES for marine conservation. Foremost, the SCB community could foster dialogue on creating a broad vision of how CITES should apply to marine species and how it can synergistically interact with other important marine-conservation treaties and institutions. More specific contributions could focus on defining listing criteria for marine species, improving the science behind the nondetriment finding, and offering technical guidance on species proposals. A future role for SCB could be to contribute to the enhanced effectiveness of other marine conservation agreements such as the Convention on the Conservation of Migratory Species of Wild Animals, the International Whaling Commission, and the United Nations Convention on the Law of the Sea.

Conservation needs of the dugong Dugong dugon in Cambodia and Phu Quoc Island, Vietnam

This research was conducted to assess the location of population groups and conservation issues affecting dugong Dugong dugon along the eastern Gulf of Thailand off Cambodia and Phu Quoc Island, Vietnam. Interviews in fishing communities in 2002 and 2004 along the Cambodian coast revealed that dugongs are sporadically found in fishing nets and their body parts are sold for a relatively large profit. During 4 days of aerial surveys in Cambodia in 2004 we saw no dugongs. We interviewed villagers in Phu Quoc Island, Vietnam, in 2002 and learnt that dugongs are regularly found and hunted, again for high profits. In both countries we recommend that legislation addressing threatened species be strengthened and enforced. In collaboration with the Cambodian and Vietnamese governments and NGOs, we propose the exploration of alternative non- destructive fishing methods and the initiation of an education campaign based on conservation of marine wildlife and the nearshore environment. National and transboundary management and community-based con- servation are necessary in conjunction with strategies to address overfishing and poverty.

Line transect estimates of Irrawaddy dolphin abundance along the eastern Gulf Coast of Thailand

Effective conservation of coastal marine mammals is largely dependent on reliable knowledge of their abundance, as well as the ecological and human factors driving their distribution. In developing countries, lack of resources and capacity frequently impedes research needed to estimate abundance and to determine the ecological requirements of coastal marine mammals and the impact of threats related to coastal development and fisheries. Over the course of five years, we developed practical research methods and trained local scientists in Thailand to use accepted line transect distance sampling methods for abundance assessment. The study focused on a little-known coastal and freshwater species found throughout Southeast Asia, namely the Irrawaddy dolphin, which has been sighted regularly along the coast of the eastern Gulf of Thailand. During five years of line transect boat surveys in Trat Province, the eastern-most province in Thailand, we found an average of 423 dolphins distributed within 12km of the coast. Compared to other abundance estimates of coastal Irrawaddy dolphins in Southeast Asia, this is a relatively large number. This population could extend into the northern coast of Cambodia, where surveys are currently being planned. The Thai government has begun talks with Cambodia about a transboundary marine protected area that would include areas in both countries where coastal Irrawaddy dolphins are found. Other analyses include photo-identification, modeling environmental factors that determine presence, determination of fresh vs. salt water foraging using stable isotopes, and an assessment of threats. Collaboration between scientists in Thailand, Cambodia and Vietnam is further needed to determine dolphin movement and habitat use across borders.

Evaluation of Error Reduction Techniques on a LIDAR-Derived Salt Marsh Digital Elevation Model

ABSTRACT McClure, A.; Liu, X.; Hines, E., and Ferner, M.C., 2016. Evaluation of error reduction techniques on a LIDAR-derived salt marsh digital elevation model. Accurate elevation information is a necessity for conservation and management of tidal salt marshes where elevation differences can be as little as 2 m and where sea-level rise is a critical threat. This study applied an existing method to evaluate and improve the vertical accuracy of a 1-m LIDAR-derived digital elevation model (DEM) using a real-time kinematic (RTK) GPS dataset with a vertical accuracy of ±0.02 m and local vegetation data within a tidal salt marsh. Correction factors were generated for vegetation species within each major vegetation class and produced a modified DEM of the site. Comparison between the original and modified DEM showed that the mean error was reduced from 0.16 m to −0.004 m and the root mean squared error was reduced from 0.212 m to 0.098 m. These results demonstrate that it is possible to significantly reduce vertical error contained within a salt marsh DEM derived from a LIDAR dataset using highly accurate RTK GPS data combined with vegetation data collected on a per site basis.

Spatial and Temporal Variability in Shipping Traffic Off San Francisco, California

Shipping traffic poses a worldwide threat to many large whale species. Spatially explicit risk assessments are increasingly being used as a tool to minimize ship-strike risk. These assessments often use static representations of shipping patterns. We used Automatic Identification System data to quantify variability in cargo shipping traffic entering and exiting San Francisco Bay, which contains some of the busiest ports in the United States, at three temporal resolutions: (1) before and after implementation of the California Air Resources Boards Ocean-Going Vessels Fuel Rule, (2) among seasons, and (3) day versus night. We used the nonparametric Moods Median test to compare median daily distance traveled because the data were not normally distributed and the variance was not homogeneous. Our analyses show that shipping traffic off San Francisco is dynamic at both interannual and daily temporal resolutions, but that traffic was fairly consistent among the seasons considered. Our analyses emphasize the importance of economic and regulatory drivers on interannual shipping traffic patterns. Shipping traffic is expected to continue to change off the U.S. West Coast and to increase globally. These changes in shipping traffic could have implications for the risk of ships striking whales and should be included in risk assessments.

Poor fisheries struggle with U.S. import rule

In their Policy Forum “U.S. seafood import restriction presents opportunity and risk” (16 December, p. [1372][1]), R. Williams et al. describe some possible effects of the U.S. National Oceanic and Atmospheric Administration (NOAA) rule requiring that seafood imported into the United States must

A low-cost solution for documenting distribution and abundance of endangered marine fauna and impacts from fisheries

Fisheries bycatch is a widespread and serious issue that leads to declines of many important and threatened marine species. However, documenting the distribution, abundance, population trends and threats to sparse populations of marine species is often beyond the capacity of developing countries because such work is complex, time consuming and often extremely expensive. We have developed a flexible tool to document spatial distribution and population trends for dugongs and other marine species in the form of an interview questionnaire supported by a structured data upload sheet and a comprehensive project manual. Recognising the effort invested in getting interviewers to remote locations, the questionnaire is comprehensive, but low cost. The questionnaire has already been deployed in 18 countries across the Indo-Pacific region. Project teams spent an average of USD 5,000 per country and obtained large data sets on dugong distribution, trends, catch and bycatch, and threat overlaps. Findings indicated that >50% of respondents had never seen dugongs and that 20% had seen a single dugong in their lifetimes despite living and fishing in areas of known or suspected dugong habitat, suggesting that dugongs occurred in low numbers. Only 3% of respondents had seen mother and calf pairs, indicative of low reproductive output. Dugong hunting was still common in several countries. Gillnets and hook and line were the most common fishing gears, with the greatest mortality caused by gillnets. The questionnaire has also been used to study manatees in the Caribbean, coastal cetaceans along the eastern Gulf of Thailand and western Peninsular Malaysia, and river dolphins in Peru. This questionnaire is a powerful tool for studying distribution and relative abundance for marine species and fishery pressures, and determining potential conservation hotspot areas. We provide the questionnaire and supporting documents for open-access use by the scientific and conservation communities.