Emre Karaman

ANALYSIS OF FITTING GROWTH MODELS IN MEDIUM GROWING CHICKEN RAISED INDOOR SYSTEM

A total of 35 Sprague-Dawley adult rats were used to investigate the effect of aluminum toxicity on behavioral patterns of adult female rats and learning ability of offspring. Rats were allotted into 4 groups, group one received 2g/l anhydrous aluminum chloride (n=10), group two received 3g/l anhydrous aluminum chloride (n=10), group thr.ee received 3.5g/l anhydrous aluminum chloride in drinking water (n=10) and control group did not receive anhydrous aluminum chloride (n=5) from 8th day of pregnancy till weaning of pups. The obtained results showed that feeding time increased significantly in 2g/l and 3.5g/l anhydrous aluminum chloride groups than control one, while, litter licking frequency and nursing time increased significantly in 2g/l anhydrous aluminum chloride than other groups. On contrary lying time decreased significantly in rats treated with 2g/l anhydrous aluminum chloride than other groups, licking and scratching decreased in 3g/l and 3.5g/l anhydrous aluminum chloride groups. In considering, the time spent in closed arms by offspring, pups spent significantly much time than control group, while, time spent in open arms of elevated plus maze decreased significantly in all treated groups than control group. On the other hand, number of entries in open arms significantly decreased in treated groups than control one.

Genetic parameter estimates of growth curve and reproduction traits in Japanese quail

The goal of selection studies in broilers is to obtain genetically superior chicks in terms of major economic traits, which are mainly growth rate, meat yield, and feed conversion ratio. Multiple selection schedules for growth and reproduction are used in selection programs within commercial broiler dam lines. Modern genetic improvement methods have not been applied in experimental quail lines. The current research was conducted to estimate heritabilities and genetic correlations for growth and reproduction traits in a Japanese quail flock. The Gompertz equation was used to determine growth curve parameters. The Gibbs sampling under a multi-trait animal model was applied to estimate the heritabilities and genetic correlations for these traits. A total of 948 quail were used with complete pedigree information to estimate the genetic parameters. Heritability estimates of BW, absolute and relative growth rates at 5 wk of age (AGR and RGR), β0 and β2 parameters, and age at point of inflection (IPT) of Gompertz growth curve, total egg number (EN) from the day of first lay to 24 wk of age were moderate to high, with values ranging from 0.25 to 0.40. A low heritability (0.07) for fertility (FR) and a strong genetic correlation (0.83) between FR and EN were estimated in our study. Body weight exhibited negative genetic correlation with EN, FR, RGR, and IPT. This genetic antagonism among the mentioned traits may be overcome using modern poultry breeding methods such as selection using multi-trait best linear unbiased prediction and crossbreeding.

An Upper Bound for Accuracy of Prediction Using GBLUP

This study aims at characterizing the asymptotic behavior of genomic prediction R2 as the size of the reference population increases for common or rare QTL alleles through simulations. Haplotypes derived from whole-genome sequence of 85 Caucasian individuals from the 1,000 Genomes Project were used to simulate random mating in a population of 10,000 individuals for at least 100 generations to create the LD structure in humans for a large number of individuals. To reduce computational demands, only SNPs within a 0.1M region of each of the first 5 chromosomes were used in simulations, and therefore, the total genome length simulated was 0.5M. When the genome length is 30M, to get the same genomic prediction R2 as with a 0.5M genome would require a reference population 60 fold larger. Three scenarios were considered varying in minor allele frequency distributions of markers and QTL, for h2 = 0.8 resembling height in humans. Total number of markers was 4,200 and QTL were 70 for each scenario. In this study, we considered the prediction accuracy in terms of an estimability problem, and thereby provided an upper bound for reliability of prediction, and thus, for prediction R2. Genomic prediction methods GBLUP, BayesB and BayesC were compared. Our results imply that for human height variable selection methods BayesB and BayesC applied to a 30M genome have no advantage over GBLUP when the size of reference population was small (<6,000 individuals), but are superior as more individuals are included in the reference population. All methods become asymptotically equivalent in terms of prediction R2, which approaches genomic heritability when the size of the reference population reaches 480,000 individuals.

Nonlinear mixed effects modeling of growth in Japanese quail

The aim of this study was to examine the use of a nonlinear mixed modeling approach to growth studies of Japanese quail. Weekly BW measurements of 89 female and 89 male quail were used in the study. A well-known logistic growth function was used in the analysis. The function was expanded to include a sex effect and random bird effects in β0 and β2 parameters. Analyses were performed via SAS 9.2 software. The performance of 3 models, a fixed effects model (model 1) including only sex effect, a mixed effects model (model 2) including sex effect in β0 and β2 parameters and random bird effect in β0, and a mixed effects model (model 3) including sex and random bird effects in β0 and β2 parameters, was compared. The minimized value of -2 times the log-likelihood, Akaike information criterion, corrected version of Akaike information criterion, and Schwarz information criterion values indicated a better fit of model 3 relative to other competitive models. Furthermore, the error variance reduction in model 2 and model 3 compared with model 1 was 60 and 65%, respectively, indicating the better fit of the mixed effect models. Significant differences between sexes were also determined in β0 and β2 parameters, in which the males, on average, had lower β0 and higher β2 parameters than females.

Investigation of nonlinear models to describe long-term egg production in Japanese quail

In this study, long-term egg production was monitored in a Japanese quail flock, which had not undergone any genetic improvement, for 52 wk as of the age of sexual maturity. The study aimed to detect some traits with respect to egg production, to determine the cumulative hen-housed egg numbers, and to compare goodness of fit of different nonlinear models for the percentage of hen-day egg production. The mean age at first egg was 38.9 d and the age at 50% egg production was 45.3 d. The quail reached peak production at 15 wk of age (wk 9 of egg production period) when the percentage of hen-day egg production was found to be 94%. The cumulative hen-housed egg number for 52 wk as of the age of sexual maturity was 253.08. The monomolecular function, a nonsigmoid model, was used in the nonlinear regression analysis of the cumulative egg numbers. Parameters a, b, and c of the monomolecular model were estimated to be 461.70, 473.31, and 0.065, respectively. Gamma, McNally, Adams-Bell, and modified compartmental models, widely used in hens previously, were used in the nonlinear regression analysis of the percentages of hen-day egg production. The goodness of fit for these models was compared using the values of pseudo-R², Akaikes information criterion, and Bayesian information criterion. It was determined that all the models are adequate but that the Adams-Bell model displayed a slightly better fit for the percentage of hen-day egg production in Japanese quail than others.

Egg shell quality in Japanese quail: characteristics, heritabilities and genetic and phenotypic relationships.

The objective of the present study was to estimate heritabilities as well as genetic and phenotypic correlations for egg weight, specific gravity, shape index, shell ratio, egg shell strength, egg length, egg width and shell weight in Japanese quail eggs. External egg quality traits were measured on 5864 eggs of 934 female quails from a dam line selected for two generations. Within the Bayesian framework, using Gibbs Sampling algorithm, a multivariate animal model was applied to estimate heritabilities and genetic correlations for external egg quality traits. The heritability estimates for external egg quality traits were moderate to high and ranged from 0.29 to 0.81. The heritability estimates for egg and shell weight of 0.81 and 0.76 were fairly high. The genetic and phenotypic correlations between egg shell strength with specific gravity, shell ratio and shell weight ranging from 0.55 to 0.79 were relatively high. It can be concluded that it is possible to determine egg shell quality using the egg specific gravity values utilizing its high heritability and fairly high positive correlation with most of the egg shell quality traits. As a result, egg specific gravity may be the choice of selection criterion rather than other external egg traits for genetic improvement of egg shell quality in Japanese quails.

Effects of slaughter age and mass selection on slaughter and carcass characteristics in 2 lines of Japanese quail

The aim of this study was to evaluate the relationship between slaughter age and slaughter-carcass characteristics in 2 quail lines. With this aim, a Japanese quail flock subjected to mass selection to increase BW for 4 generations and a control flock that randomly mated for 4 generations were used. Birds of both lines were slaughtered at 4, 5, 6, 7, and 8 wk of age. Weights of carcass, breast, leg, wing, edible inner organs, and abdominal fat, and their percentages in BW were measured. Short-term mass selection for increased BW resulted in an increase for all slaughter and carcass traits, except edible inner organ percentage. Slaughter age had a significant effect on the studied traits, indicating that the BW and weight of carcass, carcass parts, abdominal fat, edible inner organs, and percentage of abdominal fat increased with increased slaughter age. Conversely, the carcass yield and percentages of carcass parts and edible inner organs were decreased with an increase in slaughter age. The present study showed that deterioration in carcass quality occurred with an increase in slaughter age. Furthermore, the differences between the carcass weights over the different ages ranged between 16.83 to 22.45% in favor of the selection line after a short-term mass selection.

Bayesian Hierarchical Modeling of Growth via Gompertz Model: An Application in Poultry

Estimation of growth curves of poultry species is of particular importance in animal science. This study aims at fitting hierarchical Gompertz growth curve to Japanese quail’s body weight data obtained from hatching to 56 days of age weekly. The model involved a random animal effect as well as sex and line effects in asymptotic weight parameters. Model parameters were estimated via Bayesian methodology. The results of the present study indicated a higher asymptotic weight for selection line quail than that of control line. Moreover, as expected, female quails had a higher asymptotic weight than males.