Erik Nordkvist

Rapid and non-invasive analysis of deoxynivalenol in durum and common wheat by Fourier-Transform Near Infrared (FT-NIR) spectroscopy

Fourier transform near-infrared spectroscopy (FT-NIR) was used for rapid and non-invasive analysis of deoxynivalenol (DON) in durum and common wheat. The relevance of using ground wheat samples with a homogeneous particle size distribution to minimize measurement variations and avoid DON segregation among particles of different sizes was established. Calibration models for durum wheat, common wheat and durum + common wheat samples, with particle size <500 µm, were obtained by using partial least squares (PLS) regression with an external validation technique. Values of root mean square error of prediction (RMSEP, 306–379 µg kg–1) were comparable and not too far from values of root mean square error of cross-validation (RMSECV, 470–555 µg kg–1). Coefficients of determination (r 2) indicated an “approximate to good” level of prediction of the DON content by FT-NIR spectroscopy in the PLS calibration models (r 2 = 0.71–0.83), and a “good” discrimination between low and high DON contents in the PLS validation models (r 2 = 0.58–0.63). A “limited to good” practical utility of the models was ascertained by range error ratio (RER) values higher than 6. A qualitative model, based on 197 calibration samples, was developed to discriminate between blank and naturally contaminated wheat samples by setting a cut-off at 300 µg kg–1 DON to separate the two classes. The model correctly classified 69% of the 65 validation samples with most misclassified samples (16 of 20) showing DON contamination levels quite close to the cut-off level. These findings suggest that FT-NIR analysis is suitable for the determination of DON in unprocessed wheat at levels far below the maximum permitted limits set by the European Commission.

Near infrared reflectance spectroscopy for quantification of crop residue, green manure and catch crop C and N fractions governing decomposition dynamics in soil

For environmental, as well as agronomic reasons, the turnover of carbon (C) and nitrogen (N) from crop residues, catch crops and green manures incorporated into agricultural soils has attracted much attention. It has previously been found that the C and N content in fractions from stepwise chemical digestion of plant materials constitutes an adequate basis for describing a priori the degradability of both C and N in soil. However, the analyses involved are costly and, therefore, unlikely to be used routinely. The aim of the present work was to develop near infrared (NIR) calibrations for C and N fractions governing decomposition dynamics. Within the five Nordic countries, we sampled a uniquely broad-ranged collection representing most of the fresh and mature plant materials that may be incorporated into agricultural soils from temperate regions. The specific objectives of the current study were (1) to produce NIR calibrations with data on C and N in fractions obtained by stepwise chemical digestion (SCD); (2) to validate these calibrations on independent plant samples and (3) to compare the precision and robustness of these broad-based calibrations with calibrations derived from materials within a narrower quality range. According to an internal validation set, plant N, soluble N, cellulose C, holocellulose (hemicellulose + cellulose) C, soluble C and neutral detergent fibre (NDF) dry matter were the parameters best predicted (r2 = 0.97, 0.95, 0.94, 0.91, 0.90 and 0.94, respectively). However, the calibrations for soluble C and NDF were regarded as unstable, as their validation statistics were substantially poorer than the calibration statistics. The calibrations for all structural N fractions and lignin C were considered poor (r2 = 0.47–0.70). By comparing our broad-based calibrations for plant N and NDF with similar calibrations for a sample set representing a commercial forage database, it was evident that the broad-based calibrations predicted a narrow-based sample set better than vice versa. For plant N, the residual mean squared error of prediction (RMSEP), when testing the broad-based calibration with the narrow-based validation set, was substantially smaller than the RMSEP obtained when validating the broad-based calibration internally (1.8 vs 2.7 mg Ng−1 dry matter). Overall, the calibrations that performed best were those concerning the parameters most strongly influencing C and N mineralisation from plant materials.

Differences in botanical and chemical composition of forage from organic and conventional leys: A survey at farm field level

Samples of grass and clover swards from leys were collected during one season on different Swedish farms converting to organic farming, in order to obtain a survey of general practical differences in the botanical and chemical composition of leys when converting to organic farming. The samples were analysed with traditional chemical methods as well as near‐infrared (NIR) spectroscopy and inductively coupled plasma analysis. Multivariate data analysis (principal component analysis and partial least squares regression) was used to evaluate the results. It was found that the main difference of practical importance was a significantly higher percentage of clover in organically grown leys. The NIR analysis detected differences in botanical composition and with harvest times. Differences other than botanical composition between organic and conventional samples could only be detected in samples within the same botanical fraction and harvest time. It was concluded that it is important for an organic farmer to mon...

Occurrence of chloramphenicol in cereal straw in north-western Europe.

ABSTRACT Two surveys are presented of straw analysed for naturally occurring chloramphenicol (CAP), a drug banned for use in food-producing animals. In the first study, CAP was analysed by LC-MS/MS and detected in 37 out of 105 straw samples originating from the Netherlands, France, the UK, Germany and Denmark. The highest level found was 6.3 µg kg−1, the average 0.6 µg kg−1 and the median 0.2 µg kg−1. The second study included a method comparison between ELISA and LC-MS/MS and a survey of CAP in cereal straw sampled at farms in all areas of Sweden. A total of 215 samples were screened by ELISA and a subset of 26 samples was also analysed by LC-MS/MS. Fifty-four of the samples contained more than 1 µg kg−1 CAP and the highest level found was 32 µg kg−1 (confirmed by LC-MS/MS). The highest contents of CAP in this study were allocated to the Baltic sea coast in the south-eastern part of Sweden (the county of Skåne and the Baltic Sea isle of Gotland). These results indicate a high incidence of CAP in straw in north-west Europe and have a severe impact on the enforcement of European Union legislation.

Deciphering the genome and secondary metabolome of the plant pathogen Fusarium culmorum

Fusarium culmorum is one of the most important fungal plant pathogens that causes diseases on a wide diversity of cereal and non-cereal crops. We report herein for the first time the genome sequence of F. culmorum strain PV and its associated secondary metabolome that plays a role in the interaction with other microorganisms and contributes to its pathogenicity on plants. The genome revealed the presence of two terpene synthases, trichodiene and longiborneol synthase, which generate an array of volatile terpenes. Furthermore, we identified two gene clusters, deoxynivalenol and zearalenone, which encode for the production of mycotoxins. Linking the production of mycotoxins with in vitro bioassays, we found high virulence of F. culmorum PV on maize, barley and wheat. By using ultra-performance liquid chromatography-mass spectrometry, we confirmed several compounds important for the behaviour and lifestyle of F. culmorum. This research sets the basis for future studies in microbe-plant interactions.

Collaborative study on the effect of grinding on the detection of bones from processed animal proteins in feed by light microscopy

ABSTRACT Bone fragments are essential structures for the detection of processed animal proteins (PAPs) in feed by light microscopy for official controls according to Annex VI of European Union Regulation EC/152/2009. The preparation of samples submitted for analysis requires a grinding step to make them suitable for microscopic slide preparation and observation. However, there are no technical guidelines set down for this step despite the fact that it can lead to an increase in bone numbers due to fragmentation. This was demonstrated by an in-house study carried out by the Irish National Reference Laboratory (NRL) for animal protein detection. The present collaborative study investigated the possible effects of three different grinding conditions on the final result for a feed adulterated with 0.05 and 0.01% (w/w) of PAP. The microscopic analysis either combined or not with an Alizarin Red staining was carried out by 10 different laboratories. The results demonstrated that although a large variation in the numbers of bone fragments was noted, five of the six different grinding/staining combinations applied at two levels of PAP adulteration did not significantly (at p = 0.05) differ from one another. The only exception occurred when grinding the feed containing 0.05% of PAP with a rotor mill equipped with a 0.5-mm sieve and combined with a staining which resulted in a greater number of bone fragments by forced fragmentation. Overall, the impact of the grinding/staining combinations on the final results was shown to be negligible when considering the regulatory limit of detection (LOD) requirement for the method and the current rules of implementation of the light microscopic method. From a total of 180 analyses carried out on the feed matrix containing 0.05% of PAP no false-negative result was observed, and at a level of 0.01% PAP only 10 false-negative results occurred.

Detoxification of Aflatoxin-Contaminated Poultry Feeds by 3 Adsorbents, Bentonite, Activated Charcoal, and Fuller's Earth

SUMMARY Aflatoxicosis is a major problem associated with poultry production in the tropics. We tested the ability of 3 low‐cost and locally available adsorbents (activated charcoal, bentonite, and fullers earth) to detoxify poultry feeds contaminated with aflatoxin. Bentonite was the most effective adsorbent and lowered the total aflatoxin concentration from 120 ± 38 &mgr;g/kg to 15 ± 5.0 &mgr;g/kg. The 3 adsorbent treatments resulted in 63%‐100% weight increase of the birds, compared with birds fed the untreated, aflatoxin‐containing feed. The number of white blood cells in blood samples was increased by 13%‐17% in birds that consumed adsorbent‐treated feed, compared with the untreated, aflatoxin‐contaminated feed. Hepatic lesions were also prominent in the liver of the birds fed contaminated but untreated feed but were reduced in the group that were fed the adsorbent‐treated feeds, especially in the bentonite‐treated feed. Conclusively, the adsorbents were able to reduce the concentration of aflatoxin in the feed and this reflected positively on the general performance of the birds.

Distribution of chloramphenicol to tissues, plasma and urine in pigs after oral intake of low doses

ABSTRACT Toxic effects of chloramphenicol in humans caused the ban for its use in food-producing animals in the EU. A minimum required performance level (MRPL) was specified for chloramphenicol at 0.3 μg kg–1 for various matrices, including urine. In 2012, residues of chloramphenicol were found in pig urine and muscle without signs of illegal use. Regarding its natural occurrence in straw, it was hypothesised that this might be the source, straw being compulsory for use as bedding material for pigs in Sweden. Therefore, we investigated if low daily doses of chloramphenicol (4, 40 and 400 μg/pig) given orally during 14 days could result in residues in pig tissues and urine. A dose-related increase of residues was found in muscle, plasma, kidney and urine (showing the highest levels), but no chloramphenicol was found in the liver. At the lowest dose, residues were below the MRPL in all tissues except in the urine. However, in the middle dose, residues were above the MRPL in all tissues except muscle, and at the highest dose in all matrices. This study proves that exposure of pigs to chloramphenicol in doses occurring naturally in straw could result in residues above the MRPL in plasma, kidney and especially urine.