Etienne Garand

Cryogenic Ion Chemistry and Spectroscopy

The use of mass spectrometry in macromolecular analysis is an incredibly important technique and has allowed efficient identification of secondary and tertiary protein structures. Over 20 years ago, Chemistry Nobelist John Fenn and co-workers revolutionized mass spectrometry by developing ways to non-destructively extract large molecules directly from solution into the gas phase. This advance, in turn, enabled rapid sequencing of biopolymers through tandem mass spectrometry at the heart of the burgeoning field of proteomics. In this Account, we discuss how cryogenic cooling, mass selection, and reactive processing together provide a powerful way to characterize ion structures as well as rationally synthesize labile reaction intermediates. This is accomplished by first cooling the ions close to 10 K and condensing onto them weakly bound, chemically inert small molecules or rare gas atoms. This assembly can then be used as a medium in which to quench reactive encounters by rapid evaporation of the adducts, as well as provide a universal means for acquiring highly resolved vibrational action spectra of the embedded species by photoinduced mass loss. Moreover, the spectroscopic measurements can be obtained with readily available, broadly tunable pulsed infrared lasers because absorption of a single photon is sufficient to induce evaporation. We discuss the implementation of these methods with a new type of hybrid photofragmentation mass spectrometer involving two stages of mass selection with two laser excitation regions interfaced to the cryogenic ion source. We illustrate several capabilities of the cryogenic ion spectrometer by presenting recent applications to peptides, a biomimetic catalyst, a large antibiotic molecule (vancomycin), and reaction intermediates pertinent to the chemistry of the ionosphere. First, we demonstrate how site-specific isotopic substitution can be used to identify bands due to local functional groups in a protonated tripeptide designed to stereoselectively catalyze bromination of biaryl substrates. This procedure directly reveals the particular H-bond donor and acceptor groups that enforce the folded structure of the bare ion as well as provide contact points for noncovalent interaction with substrates. We then show how photochemical hole-burning involving only vibrational excitations can be used in a double-resonance mode to systematically disentangle overlapping spectra that arise when several conformers of a dipeptide are prepared in the ion source. Finally, we highlight our ability to systematically capture reaction intermediates and spectroscopically characterize their structures. Through this method, we can identify the pathway for water-network-mediated, proton-coupled transformation of nitrosonium, NO(+) to HONO, a key reaction controlling the cations present in the ionosphere. Through this work, we reveal the critical role played by water molecules occupying the second solvation shell around the ion, where they stabilize the emergent product ion in a fashion reminiscent of the solvent coordinate responsible for the barrier to charge transfer in solution. Looking to the future, we predict that the capture and characterization of fleeting intermediate complexes in the homogeneous catalytic activation of small molecules like water, alkanes, and CO2 is a likely avenue rich with opportunity.

Infrared Spectroscopy of the Microhydrated Nitrate Ions NO3−(H2O)1−6†

We present infrared photodissociation spectra of the microhydrated nitrate ions NO(3)(-)(H(2)O)(1-6), measured from 600 to 1800 cm(-1). The assignment of the spectra is aided by comparison with calculated B3LYP/aug-cc-pVDZ harmonic frequencies, as well as with higher-level calculations. The IR spectra are dominated by the antisymmetric stretching mode of NO(3)(-), which is doubly degenerate in the bare ion but splits into its two components for most microhydrated ions studied here due to asymmetric solvation of the nitrate core. However, for NO(3)(-)(H(2)O)(3), the spectrum reveals no lifting of this degeneracy, indicating an ion with a highly symmetric solvation shell. The first three water molecules bind in a bidentate fashion to the terminal oxygen atoms of the nitrate ion, keeping the planar symmetry. The onset of extensive water-water hydrogen bonding is observed starting with four water molecules and persists in the larger clusters.

Determination of Noncovalent Docking by Infrared Spectroscopy of Cold Gas-Phase Complexes

Ties That Bind Almost by definition, effective catalysts bind their substrates for a very short time—releasing them quickly after helping them react and then moving on to bind new, as yet unreacted, substrates. This property engenders an efficient cycle, but it hinders study of the binding motif. Garand et al. (p. 694, published online 19 January; see the Perspective by Zwier) devised a technique to extract bound complexes from solution and freeze their conformations in cold, gas-phase clusters. Probing these clusters by vibrational spectroscopy in conjunction with theoretical calculations then allowed the sites of hydrogen bonding that hold the complexes together to be pinpointed. Conformationally freezing a weakly bound complex in the gas phase sheds light on its likely binding motifs in solution. Multidentate, noncovalent interactions between small molecules and biopolymer fragments are central to processes ranging from drug action to selective catalysis. We present a versatile and sensitive spectroscopic probe of functional groups engaged in hydrogen bonding in such contexts. This involves measurement of the frequency changes in specific covalent bonds upon complex formation, information drawn from otherwise transient complexes that have been extracted from solution and conformationally frozen near 10 kelvin in gas-phase clusters. Resonances closely associated with individual oscillators are easily identified through site-specific isotopic labeling, as demonstrated by application of the method to an archetypal system involving a synthetic tripeptide known to bind biaryl substrates through tailored hydrogen bonding to catalyze their asymmetric bromination. With such data, calculations readily converge on the plausible operative structures in otherwise computationally prohibitive, high-dimensionality landscapes.

Infrared Spectroscopy of Hydrated Bicarbonate Anion Clusters: HCO3−(H2O)1−10

Infrared multiple photon dissociation spectra are reported for HCO(3)(-)(H(2)O)(1-10) clusters in the spectral range of 600-1800 cm(-1). In addition, electronic structure calculations at the MP2/6-311+G(d,p) level have been performed on the n = 1-8 clusters to identify the structure of the low-lying isomers and to assign the observed spectral features. General trends in the stepwise solvation motifs of the bicarbonate anion can be deduced from the overall agreement between the calculated and experimental spectra. The most important of these is the strong preference of the water molecules to bind to the negatively charged CO(2) moiety of the HCO(3)(-) anion. However, a maximum of four water molecules interact directly with this site. The binding motif in the most stable isomer of the n = 4 cluster, a four-membered ring with each water forming a single H-bond with the CO(2) moiety, is retained in all of the lowest-energy isomers of the larger clusters. Starting at n = 6, additional solvent molecules are found to form a second hydration layer, resulting in a water-water network bound to the CO(2) moiety of the bicarbonate anion. Binding of a water to the hydroxyl group of HCO(3)(-) is particularly disfavored and apparently does not occur in any of the clusters investigated here. Similarities and differences with the infrared spectrum of aqueous bicarbonate are discussed in light of these trends.

Vibrational spectroscopy of hydrated electron clusters(H2O)15–50− via infrared multiple photon dissociation

Infrared multiple photon dissociation spectra for size-selected water cluster anions (H2O)(n)(-), n=15-50, are presented covering the frequency range of 560-1820 cm(-1). The cluster ions are trapped and cooled by collisions with ambient He gas at 20 K, with the goal of defining the cluster temperature better than in previous investigations of these species. Signal is seen in two frequency regions centered around 700 and 1500-1650 cm(-1), corresponding to water librational and bending motions, respectively. The bending feature associated with a double-acceptor water molecule binding to the excess electron is clearly seen up to n=35, but above n=25; this feature begins to blueshift and broadens, suggesting a more delocalized electron binding motif for the larger clusters in which the excess electron interacts with multiple water molecules.

Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap.

Isomer-specific vibrational predissociation spectra are reported for the gas-phase GlySarH(+) and SarSarH(+) [Gly = glycine; Sar = sarcosine] ions prepared by electrospray ionization and tagged with weakly bound D2 adducts using a cryogenic ion trap. The contributions of individual isomers to the overlapping vibrational band patterns are completely isolated using a pump-probe photochemical hole-burning scheme involving two tunable infrared lasers and two stages of mass selection (hence IR(2)MS(2)). These patterns are then assigned by comparison with harmonic (MP2/6-311+G(d,p)) spectra for various possible conformers. Both systems occur in two conformations based on cis and trans configurations with respect to the amide bond. In addition to the usual single intramolecular hydrogen bond motif between the protonated amine and the nearby amide oxygen atom, cis-SarSarH(+) adopts a previous unreported conformation in which both amino NHs act as H-bond donors. The correlated red shifts in the NH donor and C═O acceptor components of the NH···O═C linkage to the acid group are unambiguously assigned in the double H-bonded conformer.

Nonadiabatic Interactions in the Cl + H2 Reaction Probed by ClH2- and ClD2- Photoelectron Imaging

The degree of electronic and nuclear coupling in the Cl + H2 reaction has become a vexing problem in chemical dynamics. We report slow electron velocity-map imaging (SEVI) spectra of ClH2– and ClD2–. These spectra probe the reactant valley of the neutral reaction potential energy surface, where nonadiabatic transitions responsible for reactivity of the Cl excited spin-orbit state with H2 would occur. The SEVI spectra reveal progressions in low-frequency Cl·H2 bending and stretching modes, and are compared to simulations with and without nonadiabatic couplings between the Cl spin-orbit states. Although nonadiabatic effects are small, their inclusion improves agreement with experiment. This comparison validates the theoretical treatment, especially of the nonadiabatic effects, in this critical region of the Cl + H2 reaction, and suggests strongly that these effects are minor.

Vibronic structure of the formyloxyl radical (HCO2) via slow photoelectron velocity-map imaging spectroscopy and model Hamiltonian calculations.

We report high-resolution photoelectron spectra of HCO(2)(-) and DCO(2)(-) obtained with slow photoelectron velocity-map imaging. Well-resolved photodetachment transitions to the (2)A(1) and (2)B(2) states of the neutral radicals were observed. In addition, vibronic levels of the HCO(2) and DCO(2) radicals with up to 2000 cm(-1) of internal energy were calculated using a quasidiabatic Hamiltonian approach and high-level ab initio calculations. Spectral simulations using the calculated levels were found to be in excellent agreement with the experimental spectra and used to assign many of its features. This study unambiguously determined that the (2)A(1) state is the ground state of both HCO(2) and DCO(2), in contrast to earlier work that indicated the (2)B(2) state was the ground state for DCO(2). For both isotopologs, the (2)B(2) state is a very low-lying excited state with term energies of T(0) = 318 +/- 8 cm(-1) for HCO(2) and T(0) = 87 +/- 8 cm(-1) for DCO(2). The adiabatic electron affinities are determined to be EA(HCO(2)) = 3.4961 +/- 0.0010 eV and EA(DCO(2)) = 3.5164 +/- 0.0010 eV.

Slow photoelectron velocity-map imaging spectroscopy of C2N−, C4N−, and C6N−

High resolution photoelectron spectra of C(2)N(-), C(4)N(-), and C(6)N(-) anions are reported, obtained using slow electron velocity-map imaging. The spectra show well resolved transitions to the X (2)Pi neutral ground state of all three species and to the a (4)Sigma(-) excited state of C(2)N and C(4)N. This study yields the adiabatic electron affinity of C(2)N, C(4)N, and C(6)N, the spin-orbit splitting in the X (2)Pi state of each radical, and the term energy of the a (4)Sigma(-) state in C(2)N and C(4)N. Relatively little vibrational activity is observed, indicating small geometry changes upon photodetachment. This result, plus the observation of transitions to neutral quartet states, indicates that the C(2n)N(-) (n=1-3) anions all have linear (3)Sigma(-) ground states.

Vibrational spectroscopy of small hydrated CuOH+ clusters.

Coordinated copper hydroxide centers can play an important role in copper catalyzed water oxidation reactions. To have a better understanding of the interactions involved in these complexes, we studied the vibrational spectra of D2 tagged CuOH(+)(H2O)n clusters in the OH stretch region. These clusters are generated by electrospray ionization and probed via cryogenic ion vibrational spectroscopy. The results show that the copper center in the n = 3 clusters has a distorted square planar geometry. The coordination in CuOH(+)(H2O)n is therefore more akin to Cu(2+)(H2O)n with four ligands in the first solvation shell than Cu(+)(H2O)n with two ligands in the first solvation shell. There is also no evidence of any strong axial ligand interactions. The well-resolved experimental spectra enabled us to point out some discrepancies in the calculated spectra, which were found to be highly dependent on the level of theory used.