Francisco Vilaplana

Characterization of branched polysaccharides using multiple‐detection size separation techniques

The structure of branched polysaccharides involves a hierarchy of levels, from the constituent sugars, then the branching pattern, up to the macromolecular architecture, and then supramolecular organization. Finding causal relations between this complex structure/architecture and both (bio)synthetic mechanisms and final properties is needed for understanding the functionality of branched polysaccharides, which is important in fields ranging from improved nutrition and health through to papermaking and pharmaceuticals. The structural complexity makes this task especially challenging. This review focuses on the best current means to obtain reliable branch chain and size distributions using size-separation technologies coupled with number-, mass- and molecular-weight-sensitive detectors. Problems with current technologies are also critically appraised.

Analysis of brominated flame retardants in styrenic polymers. Comparison of the extraction efficiency of ultrasonication, microwave-assisted extraction and pressurised liquid extraction.

The extraction efficiency of pressurised liquid extraction (PLE), microwave-assisted extraction (MAE), and ultrasonic-assisted extraction (UAE) under different conditions has been compared for the recovery of the most commonly employed brominated flame retardants (BFRs) from styrenic polymeric matrixes. A HPLC-MS/MS method has been proposed for the simultaneous separation and quantification of tetrabromobisphenol A (TBBPA), hexabromocyclododecane (HBCD) diastereomers, and decabromodiphenyl ether (deca-BDE) in the polymeric extracts. PLE results in complete extraction of TBBPA and HBCD (95-100% recovery), and intermediate recovery rates for deca-BDE (50%). MAE, on the other hand, gives comparable performance to PLE for HBCD, but lower extraction yields for TBBPA and mainly deca-BDE. Ultrasonication, finally, offers relatively low extraction recoveries (10-50%). The proposed analytical procedures could be used for the effective identification and quantification of BFRs in styrenic plastics and for quality purposes in recycling facilities that deal with styrenic fractions from waste electrical and electronic equipment (WEEE).

Nature of alpha and beta particles in glycogen using molecular size distributions.

Glycogen is a randomly hyperbranched glucose polymer. Complex branched polymers have two structural levels: individual branches and the way these branches are linked. Liver glycogen has a third level: supramolecular clusters of beta particles which form larger clusters of alpha particles. Size distributions of native glycogen were characterized using size exclusion chromatography (SEC) to find the number and weight distributions and the size dependences of the number- and weight-average masses. These were fitted to two distinct randomly joined reference structures, constructed by random attachment of individual branches and as random aggregates of beta particles. The z-average size of the alpha particles in dimethylsulfoxide does not change significantly with high concentrations of LiBr, a solvent system that would disrupt hydrogen bonding. These data reveal that the beta particles are covalently bonded to form alpha particles through a hitherto unsuspected enzyme process, operative in the liver on particles above a certain size range.

Cellulose Nanocrystals from Forest Residues as Reinforcing Agents for Composites: A Study from Macro- to Nano-Dimensions

This study investigates for the first time the feasibility of extracting cellulose nanocrystals (CNCs) from softwood forestry logging residues (woody chips, branches and pine needles), with an obtained gravimetric yield of over 13%. Compared with the other residues, woody chips rendered a higher yield of bleached cellulosic fibers with higher hemicellulose, pectin and lignin content, longer diameter, and lower crystallinity and thermal stability. The isolation of CNCs from these bleached cellulosic fibers was verified by the removal of most of their amorphous components, the increase in the crystallinity index, and the nano-dimensions of the individual crystals. The differences in the physico-chemical properties of the fibers extracted from the three logging residues resulted in CNCs with specific physico-chemical properties. The potential of using the resulting CNCs as reinforcements in nanocomposites was discussed in terms of aspect ratio, crystallinity and thermal stability.

Structural and Functional Insights into Peptidoglycan Access for the Lytic Amidase LytA of Streptococcus pneumoniae

ABSTRACT The cytosolic N-acetylmuramoyl-l-alanine amidase LytA protein of Streptococcus pneumoniae, which is released by bacterial lysis, associates with the cell wall via its choline-binding motif. During exponential growth, LytA accesses its peptidoglycan substrate to cause lysis only when nascent peptidoglycan synthesis is stalled by nutrient starvation or β-lactam antibiotics. Here we present three-dimensional structures of LytA and establish the requirements for substrate binding and catalytic activity. The solution structure of the full-length LytA dimer reveals a peculiar fold, with the choline-binding domains forming a rigid V-shaped scaffold and the relatively more flexible amidase domains attached in a trans position. The 1.05-Å crystal structure of the amidase domain reveals a prominent Y-shaped binding crevice composed of three contiguous subregions, with a zinc-containing active site localized at the bottom of the branch point. Site-directed mutagenesis was employed to identify catalytic residues and to investigate the relative impact of potential substrate-interacting residues lining the binding crevice for the lytic activity of LytA. In vitro activity assays using defined muropeptide substrates reveal that LytA utilizes a large substrate recognition interface and requires large muropeptide substrates with several connected saccharides that interact with all subregions of the binding crevice for catalysis. We hypothesize that the substrate requirements restrict LytA to the sites on the cell wall where nascent peptidoglycan synthesis occurs. IMPORTANCE Streptococcus pneumoniae is a human respiratory tract pathogen responsible for millions of deaths annually. Its major pneumococcal autolysin, LytA, is required for autolysis and fratricidal lysis and functions as a virulence factor that facilitates the spread of toxins and factors involved in immune evasion. LytA is also activated by penicillin and vancomycin and is responsible for the lysis induced by these antibiotics. The factors that regulate the lytic activity of LytA are unclear, but it was recently demonstrated that control is at the level of substrate recognition and that LytA required access to the nascent peptidoglycan. The present study was undertaken to structurally and functionally investigate LytA and its substrate-interacting interface and to determine the requirements for substrate recognition and catalysis. Our results reveal that the amidase domain comprises a complex substrate-binding crevice and needs to interact with a large-motif epitope of peptidoglycan for catalysis. Streptococcus pneumoniae is a human respiratory tract pathogen responsible for millions of deaths annually. Its major pneumococcal autolysin, LytA, is required for autolysis and fratricidal lysis and functions as a virulence factor that facilitates the spread of toxins and factors involved in immune evasion. LytA is also activated by penicillin and vancomycin and is responsible for the lysis induced by these antibiotics. The factors that regulate the lytic activity of LytA are unclear, but it was recently demonstrated that control is at the level of substrate recognition and that LytA required access to the nascent peptidoglycan. The present study was undertaken to structurally and functionally investigate LytA and its substrate-interacting interface and to determine the requirements for substrate recognition and catalysis. Our results reveal that the amidase domain comprises a complex substrate-binding crevice and needs to interact with a large-motif epitope of peptidoglycan for catalysis.

Microwave-assisted extraction for qualitative and quantitative determination of brominated flame retardants in styrenic plastic fractions from waste electrical and electronic equipment (WEEE).

A fast method for the determination of brominated flame retardants (BFRs) in styrenic polymers using microwave-assisted extraction (MAE) and liquid chromatography with UV detection (HPLC-UV) was developed. Different extraction parameters (extraction temperature and time, type of solvent, particle size) were first optimised for standard high-impact polystyrene (HIPS) samples containing known amounts of tetrabromobisphenol A (TBBPA) and decabromodiphenyl ether (Deca-BDE). Complete extraction of TBBPA was achieved using a combination of polar/non-polar solvent system (isopropanol/n-hexane) and high extraction temperatures (130 degrees C). Lower extraction yields were, however, obtained for Deca-BDE, due to its high molecular weight and its non-polar nature. The developed method was successfully applied to the screening of BFRs in standard plastic samples from waste electrical and electronic equipment (WEEE); TBBPA could be fully recovered, and Deca-BDE could be identified, together with minor order polybrominated diphenyl ether (PBDE) congeners.

Correlation of chemical, structural and thermal properties of natural fibres for their sustainable exploitation.

The potential of lignocellulosic natural fibres as renewable resources for thermal conversion and material reinforcement is largely dependent on the correlation between their chemical composition, crystalline structure and thermal decomposition properties. Significant differences were observed in the chemical composition of cotton, flax, hemp, kenaf and jute natural fibres in terms of cellulose, hemicellulose and lignin content, which influence their morphology, thermal properties and pyrolysis product distribution. A suitable methodology to study the kinetics of the thermal decomposition process of lignocellulosic fibres is proposed combining different models (Friedman, Flynn-Wall-Ozawa, Criado and Coats-Redfern). Cellulose pyrolysis can be modelled with similar kinetic parameters for all the natural fibres whereas the kinetic parameters for hemicellulose pyrolysis show intrinsic differences that can be assigned to the heterogeneous hemicellulose sugar composition in each natural fibre. This study provides the ground to critically select the most promising fibres to be used either for biofuel or material applications.

Solvent screening for the fractionation of industrial kraft lignin

Abstract The polydispersity of commercially available kraft lignins (KLs) is one of the factors limiting their applications in polymer-based materials. A prerequisite is thus to develop lignin fractionation strategies compatible with industrial requirements and restrictions. For this purpose, a solvent-based lignin fractionation technique has been addressed. The partial solubility of KL in common industrial solvents compliant with the requirements of sustainable chemistry was studied, and the results were discussed in relation to Hansen solubility parameters. Based on this screening, a solvent sequence is proposed, which is able to separate well-defined KL fractions with low polydispersity.

Molecular Structural Differences between Type-2-Diabetic and Healthy Glycogen

Glycogen is a highly branched glucose polymer functioning as a glucose buffer in animals. Multiple-detector size exclusion chromatography and fluorophore-assisted carbohydrate electrophoresis were used to examine the structure of undegraded native liver glycogen (both whole and enzymatically debranched) as a function of molecular size, isolated from the livers of healthy and db/db mice (the latter a type 2 diabetic model). Both the fully branched and debranched levels of glycogen structure showed fundamental differences between glycogen from healthy and db/db mice. Healthy glycogen had a greater population of large particles, with more α particles (tightly linked assemblages of smaller β particles) than glycogen from db/db mice. These structural differences suggest a new understanding of type 2 diabetes.

Analytical methodology for multidimensional size/branch-length distributions for branched glucose polymers using off-line 2-dimensional size-exclusion chromatography and enzymatic treatment

Instrumental and procedural optimizations are developed for a new method to obtain 2-dimensional distributions for branched homopolymers based on size and branching. The method uses 2-dimensional off-line size-exclusion chromatography (SEC) and chemical debranching, in this case using debranching enzymes on branched glucose polymers. This treatment, first presented for the 2D weight and number distributions of starch [F. Vilaplana, R.G. Gilbert, Macromolecules 43 (2010) 7321] is applied here to give 2D weight distributions as functions of size and branch length for glycogen, amylose, and native starch containing both amylopectin and amylose. Completely dissolved polysaccharides are first fractionated by size (hydrodynamic volume) using preparative SEC; the collected fractions are then debranched by addition of isoamylase, and the size distributions of the corresponding branches are analyzed for each fraction using analytical SEC with differential refractive index and with multiple-angle laser light scattering detection. Operational parameters have been optimized to provide sufficient separation resolution for each dimension (size of the whole branched macromolecule and size of the resulting branches after debranching) and to minimize degradation. These 2-dimensional distributions bring out new features in the structure of these branched polysaccharides, and offer a useful tool to elucidate relations between biosynthesis, structure, and properties.