Gareth L. Lawson

Determining dominant scatterers of sound in mixed zooplankton populations

High-frequency acoustic scattering techniques have been used to investigate dominant scatterers in mixed zooplankton populations. Volume backscattering was measured in the Gulf of Maine at 43, 120, 200, and 420 kHz. Zooplankton composition and size were determined using net and video sampling techniques, and water properties were determined using conductivity, temperature, and depth sensors. Dominant scatterers have been identified using recently developed scattering models for zooplankton and microstructure. Microstructure generally did not contribute to the scattering. At certain locations, gas-bearing zooplankton, that account for a small fraction of the total abundance and biomass, dominated the scattering at all frequencies. At these locations, acoustically inferred size agreed well with size determined from the net samples. Significant differences between the acoustic, net, and video estimates of abundance for these zooplankton are most likely due to limitations of the net and video techniques. No other type of biological scatterer ever dominated the scattering at all frequencies. Copepods, fluid-like zooplankton that account for most of the abundance and biomass, dominated at select locations only at the highest frequencies. At these locations, acoustically inferred abundance agreed well with net and video estimates. A general approach for the difficult problem of interpreting high-frequency acoustic scattering in mixed zooplankton populations is described.

Atlantic Bluefin Tuna: A Novel Multistock Spatial Model for Assessing Population Biomass

Atlantic bluefin tuna (Thunnus thynnus) is considered to be overfished, but the status of its populations has been debated, partly because of uncertainties regarding the effects of mixing on fishing grounds. A better understanding of spatial structure and mixing may help fisheries managers to successfully rebuild populations to sustainable levels while maximizing catches. We formulate a new seasonally and spatially explicit fisheries model that is fitted to conventional and electronic tag data, historic catch-at-age reconstructions, and otolith microchemistry stock-composition data to improve the capacity to assess past, current, and future population sizes of Atlantic bluefin tuna. We apply the model to estimate spatial and temporal mixing of the eastern (Mediterranean) and western (Gulf of Mexico) populations, and to reconstruct abundances from 1950 to 2008. We show that western and eastern populations have been reduced to 17% and 33%, respectively, of 1950 spawning stock biomass levels. Overfishing to below the biomass that produces maximum sustainable yield occurred in the 1960s and the late 1990s for western and eastern populations, respectively. The model predicts that mixing depends on season, ontogeny, and location, and is highest in the western Atlantic. Assuming that future catches are zero, western and eastern populations are predicted to recover to levels at maximum sustainable yield by 2025 and 2015, respectively. However, the western population will not recover with catches of 1750 and 12,900 tonnes (the “rebuilding quotas”) in the western and eastern Atlantic, respectively, with or without closures in the Gulf of Mexico. If future catches are double the rebuilding quotas, then rebuilding of both populations will be compromised. If fishing were to continue in the eastern Atlantic at the unregulated levels of 2007, both stocks would continue to decline. Since populations mix on North Atlantic foraging grounds, successful rebuilding policies will benefit from trans-Atlantic cooperation.

Improved parametrization of Antarctic krill target strength models

There are historical discrepancies between empirical observations of Antarctic krill target strength and predictions using theoretical scattering models. These differences are addressed through improved understanding of key model parameters. The scattering process was modeled using the distorted-wave Born approximation, representing the shape of the animal as a bent and tapered cylinder. Recently published length-based regressions were used to constrain the sound speed and density contrasts between the animal and the surrounding seawater, rather than the earlier approach of using single values for all lengths. To constrain the parameter governing the orientation of the animal relative to the incident acoustic wave, direct measurements of the orientation of krill in situ were made with a video plankton recorder. In contrast to previous indirect and aquarium-based observations, krill were observed to orient themselves mostly horizontally. Averaging predicted scattering over the measured distribution of orientations resulted in predictions of target strength consistent with in situ measurements of target strength of large krill (mean length 40-43 mm) at four frequencies (43-420 kHz), but smaller than expected under the semi-empirical model traditionally used to estimate krill target strength.

Reexamination of the species assignment of Diacavolinia pteropods using DNA barcoding.

Thecosome pteropods (Mollusca, Gastropoda) are an ecologically important, diverse, and ubiquitous group of holoplanktonic animals that are the focus of intense research interest due to their external aragonite shell and vulnerability to ocean acidification. Characterizing the response of these animals to low pH and other environmental stressors has been hampered by continued uncertainty in their taxonomic identification. An example of this confusion in species assignment is found in the genus Diacavolinia. All members of this genus were originally indentified as a single species, Cavolinia longirostris, but over the past fifty years the taxonomy has been revisited multiple times; currently the genus comprises 22 different species. This study examines five species of Diacavolinia, including four sampled in the Northeast Atlantic (78 individuals) and one from the Eastern tropical North Pacific (15 individuals). Diacavolina were identified to species based on morphological characteristics according to the current taxonomy, photographed, and then used to determine the sequence of the “DNA barcoding” region of the cytochrome c oxidase subunit I (COI). Specimens from the Atlantic, despite distinct differences in shell morphology, showed polyphyly and a genetic divergence of <3% (K2P distance) whereas the Pacific and Atlantic samples were more distant (∼19%). Comparisons of Diacavolinia spp. with other Cavolinia spp. reveal larger distances (∼24%). These results indicate that specimens from the Atlantic comprise a single monophyletic species and suggest possible species-level divergence between Atlantic and Pacific populations. The findings support the maintenance of Diacavolinia as a separate genus, yet emphasize the inadequacy of our current taxonomic understanding of pteropods. They highlight the need for accurate species identifications to support estimates of biodiversity, range extent and natural exposure of these planktonic calcifiers to environmental variability; furthermore, the apparent variation of the pteropods shell may have implications for our understanding of the species’ sensitivity to ocean acidification.

Material properties of North Atlantic cod eggs and early-stage larvae and their influence on acoustic scattering

Chu, D., Wiebe, P. H., Copley, N. J., Lawson, G. L., and Puvanendran, V. 2003. Material properties of North Atlantic cod eggs and early-stage larvae and their influence on acoustic scattering. – ICES Journal of Marine Science, 60: 508–515. To study the acoustic signatures of Atlantic cod (Gadus morhua) at different biological stages from eggs to early-stage larvae (<37 days post-hatch), we conducted a series of experiments to estimate their sound-speed and density contrasts. A laboratory version of the ‘‘Acoustic Properties of Zooplankton’’ system was used. Sound speed was estimated by means of travel time between two transducers using a broadband-acoustic signal (� 300– 600 kHz). Density was estimated using a dual-density method in which two fluids of different densities were employed. It was found that the density contrasts of cod eggs and early-stage larvae were nearly all slightly less than unity (0.969–0.998), while the effective sound-speed contrasts were only slightly greater than unity (1.017–1.024) for eggs and yolk-sac stage larvae (<5 days post-hatch), and increased significantly ([1.130) for larvae older than 16 days. This change in sound-speed contrast reflected the transition of the swimbladder from an uninflated state to an inflated state. The regression relation between estimated target strength at 500 kHz and larval length in centimetres was found to be TS ¼ 176:1 log10L � 82:4 ðdBÞ. The inflation ratio of the swimbladder for early-stage larvae was an exponential function of time. The predicted period of time until full swimbladder inflation was 43.3 days.

Transcriptome-wide analysis of the response of the thecosome pteropod Clio pyramidata to short-term CO2 exposure

Thecosome pteropods, a group of calcifying holoplanktonic mollusks, have recently become a research focus due to their potential sensitivity to increased levels of anthropogenic dissolved CO2 in seawater and the accompanying ocean acidification. Some populations, however, already experience high CO2 in their natural distribution during diel vertical migrations. To achieve a better understanding of the mechanisms of pteropod calcification and physiological response to this sort of short duration CO2 exposure, we characterized the gene complement of Clio pyramidata, a cosmopolitan diel migratory thecosome, and investigated its transcriptomic response to experimentally manipulated CO2 conditions. Individuals were sampled from the Northwest Atlantic in the fall of 2011 and exposed to ambient conditions (~380ppm) and elevated CO2 (~800ppm, similar to levels experienced during a diel vertical migration) for ~10h. Following this exposure the respiration rate of the individuals was measured. We then performed RNA-seq analysis, assembled the C. pyramidata transcriptome de novo, annotated the genes, and assessed the differential gene expression patterns in response to exposure to elevated CO2. Within the transcriptome, we identified homologs of genes with known roles in biomineralization in other mollusks, including perlucin, calmodulin, dermatopontin, calponin, and chitin synthases. Respiration rate was not affected by short-term exposure to CO2. Gene expression varied greatly among individuals, and comparison between treatments indicated that C. pyramidata down-regulated a small number of genes associated with aerobic metabolism and up-regulated genes that may be associated with biomineralization, particularly collagens and C-type lectins. These results provide initial insight into the effects of short term CO2 exposure on these important planktonic open-ocean calcifiers, pairing respiration rate and the gene expression level of response, and reveal candidate genes for future ecophysiological, biomaterial and phylogenetic studies.

Long‐term broadband acoustic observations of zooplankton scattering layers in Saanich Inlet, British Columbia.

The application of broadband techniques to fish and zooplankton bioacoustics is showing potential to transform the field into one that is much more quantitative. This is because broadband techniques allow the use of the known spectra of organisms or nonbiological sources of scattering to distinguish between scatterers, allowing discrimination without the need for extensive groundtruthing. This makes it ideal for remote monitoring of fish or zooplankton assemblages, since continuous net‐sampling is often not possible. An upward‐looking 85–155 kHz broadband sonar has been collecting data nearly continuously on the Victoria Experimental Network Under the Sea (VENUS) mooring in Saanich Inlet, British Columbia since March 2008. Saanich Inlet is known to have large populations of euphausiids, which create a strong acoustic scattering layer that migrates from depth to the surface and back each day. The thickness, timing, strength and spectral response of this layer is examined throughout the annual cycle and the...

Distribution, patchiness, and behavior of Antarctic zooplankton, assessed using multi-frequency acoustic techniques

Submitted to the MIT Department of Biology and the WHOI Biology Department in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution September 2006

Changes in anthropogenic carbon storage in the Northeast Pacific in the last decade

In order to understand the oceans role as a sink for anthropogenic carbon dioxide (CO2), it is important to quantify changes in the amount of anthropogenic CO2 stored in the ocean interior over time. From August to September 2012, an ocean acidification cruise was conducted along a portion of the P17N transect (50°N 150°W to 33.5°N 135°W) in the Northeast Pacific. These measurements are compared with data from the previous occupation of this transect in 2001 to estimate the change in the anthropogenic CO2 inventory in the Northeast Pacific using an extended multiple linear regression (eMLR) approach. Maximum increases in the surface waters were 11 µmol kg−1 over 11 years near 50°N. Here, the penetration depth of anthropogenic CO2 only reached ∼300 m depth, whereas at 33.5°N, penetration depth reached ∼600 m. The average increase of the depth-integrated anthropogenic carbon inventory was 0.41 ± 0.12 mol m−2 yr−1 across the transect. Lower values down to 0.20 mol m−2 yr−1 were observed in the northern part of the transect near 50°N and increased up to 0.55 mol m−2 yr−1 toward 33.5°N. This increase in anthropogenic carbon in the upper ocean resulted in an average pH decrease of 0.002 ± 0.0003 pH units yr−1 and a 1.8 ± 0.4 m yr−1 shoaling rate of the aragonite saturation horizon. An average increase in apparent oxygen utilization of 13.4 ± 15.5 µmol kg−1 centered on isopycnal surface 26.6 kg m−3 from 2001 to 2012 was also observed.

Wideband (15–260 kHz) acoustic volume backscattering spectra of Northern krill (Meganyctiphanes norvegica) and butterfish (Peprilus triacanthus)

This paper is not subject to U.S. copyright. The definitive version was published in ICES Journal of Marine Science 74 (2017): 2249–2261, doi:10.1093/icesjms/fsx050.