Gareth P. Alexander

Knots and nonorientable surfaces in chiral nematics

Knots and knotted fields enrich physical phenomena ranging from DNA and molecular chemistry to the vortices of fluid flows and textures of ordered media. Liquid crystals provide an ideal setting for exploring such topological phenomena through control of their characteristic defects. The use of colloids in generating defects and knotted configurations in liquid crystals has been demonstrated for spherical and toroidal particles and shows promise for the development of novel photonic devices. Extending this existing work, we describe the full topological implications of colloids representing nonorientable surfaces and use it to construct torus knots and links of type (p,2) around multiply twisted Möbius strips.Knots and knotted fields enrich physical phenomena ranging from DNA and molecular chemistry to the vortices of fluid flows and textures of ordered media. Liquid crystals provide an ideal setting for exploring such topological phenomena through control of their characteristic defects. The use of colloids in generating defects and knotted configurations in liquid crystals has been demonstrated for spherical and toroidal particles and shows promise for the development of novel photonic devices. Extending this existing work, we describe the full topological implications of colloids representing non-orientable surfaces and use it to construct torus knots and links of type (

Threading dynamics of ring polymers in a gel

p

Dynamics of self-threading ring polymers in a gel

,2) around multiply-twisted Mobius strips.

Knotted defects in nematic liquid crystals.

We perform large scale three-dimensional molecular dynamics simulations of unlinked and unknotted ring polymers diffusing through a background gel, here a three-dimensional cubic lattice. Taking advantage of this architecture, we propose a new method to unambiguously identify and quantify inter-ring threadings (penetrations) and to relate these to the dynamics of the ring polymers. We find that both the number and the persistence time of the threadings increase with the length of the chains, ultimately leading to a percolating network of inter-ring penetrations. We discuss the implications of these findings for the possible emergence of a topological jammed state of very long rings.

Exact solutions for hydrodynamic interactions of two squirming spheres

We study the dynamics of ring polymers confined to diffuse in a background gel at low concentrations. We do this in order to probe the inter-play between topology and dynamics in ring polymers. We develop an algorithm that takes into account the possibility that the rings hinder their own motion by passing through themselves, i.e. self-threading. Our results suggest that the number of self-threadings scales extensively with the length of the rings and that this is substantially independent of the details of the model. The slowing down of the rings dynamics is found to be related to the fraction of segments that can contribute to the motion. Our results give a novel perspective on the motion of ring polymers in a gel, for which a complete theory is still lacking, and may help us to understand the irreversible trapping of ring polymers in gel electrophoresis experiments.

Vortex formation and dynamics of defects in active nematic shells

We show that the number of distinct topological states associated with a given knotted defect, L, in a nematic liquid crystal is equal to the determinant of the link L. We give an interpretation of these states, demonstrate how they may be identified in experiments, and describe the consequences for material behavior and interactions between multiple knots. We show that stable knots can be created in a bulk cholesteric and illustrate the topology by classifying a simulated Hopf link. In addition, we give a topological heuristic for the resolution of strand crossings in defect coarsening processes which allows us to distinguish topological classes of a given link and to make predictions about defect crossings in nematic liquid crystals.

Motility of active fluid drops on surfaces.

We provide exact solutions of the Stokes equations for a squirming sphere close to a no-slip surface, both planar and spherical, and for the interactions between two squirmers, in three dimensions. These allow the hydrodynamic interactions of swimming microscopic organisms with confining boundaries, or each other, to be determined for arbitrary separation and, in particular, in the close proximity regime where approximate methods based on point singularity descriptions cease to be valid. We give a detailed description of the circular motion of an arbitrary squirmer moving parallel to a no-slip spherical boundary or flat free surface at close separation, finding that the circling generically has opposite sense at free surfaces and at solid boundaries. While the asymptotic interaction is symmetric under head-tail reversal of the swimmer, in the near field microscopic structure can result in significant asymmetry. We also find the translational velocity towards the surface for a simple model with only the lowest two squirming modes. By comparing these to asymptotic approximations of the interaction we find that the transition from near- to far-field behaviour occurs at a separation of about two swimmer diameters. These solutions are for the rotational velocity about the wall normal, or common diameter of two spheres, and the translational speed along that same direction, and are obtained using the Lorentz reciprocal theorem for Stokes flows in conjunction with known solutions for the conjugate Stokes drag problems, the derivations of which are demonstrated here for completeness. The analogous motions in the perpendicular directions, i.e. parallel to the wall, currently cannot be calculated exactly since the relevant Stokes drag solutions needed for the reciprocal theorem are not available.

Global defect topology in nematic liquid crystals

We present a hydrodynamic model for a thin spherical shell of active nematic liquid crystal with an arbitrary configuration of defects. The active flows generated by defects in the director lead to the formation of stable vortices, analogous to those seen in confined systems in flat geometries, which generate effective dynamics for four +1/2 defects that reproduces the tetrahedral to planar oscillations observed in experiments. As the activity is increased and two counterrotating vortices dominate the flow, the defects are drawn more tightly into pairs, rotating about antipodal points. We extend this situation to also describe the dynamics of other configurations of defects. For example, two +1 defects are found to attract or repel according to the local geometric character of the director field around them and the extensile or contractile nature of the material, while additional pairs of opposite charge defects can give rise to flow states containing more than two vortices. Finally, we describe the generic relationship between defects in the orientation and singular points of the flow, and suggest implications for the three-dimensional nature of the flow and deformation in the shape of the shell.

Umbilic lines in orientational order

Drops of active liquid crystal have recently shown the ability to self-propel, which was associated with topological defects in the orientation of active filaments [Sanchez et al., Nature 491, 431 (2013)]. Here, we study the onset and different aspects of motility of a three-dimensional drop of active fluid on a planar surface. We analyze theoretically how motility is affected by orientation profiles with defects of various types and locations, by the shape of the drop, and by surface friction at the substrate. In the scope of a thin drop approximation, we derive exact expressions for the flow in the drop that is generated by a given orientation profile. The flow has a natural decomposition into terms that depend entirely on the geometrical properties of the orientation profile, i.e., its bend and splay, and a term coupling the orientation to the shape of the drop. We find that asymmetric splay or bend generates a directed bulk flow and enables the drop to move, with maximal speeds achieved when the splay or bend is induced by a topological defect in the interior of the drop. In motile drops the direction and speed of self-propulsion is controlled by friction at the substrate.

Geometry of the cholesteric phase

We give the global homotopy classification of nematic textures for a general domain with weak anchoring boundary conditions and arbitrary defect set in terms of twisted cohomology, and give an explicit computation for the case of knotted and linked defects in R3, showing that the distinct homotopy classes have a 1–1 correspondence with the first homology group of the branched double cover, branched over the disclination loops. We show further that the subset of those classes corresponding to elements of order 2 in this group has representatives that are planar and characterize the obstruction for other classes in terms of merons. The planar textures are a feature of the global defect topology that is not reflected in any local characterization. Finally, we describe how the global classification relates to recent experiments on nematic droplets and how elements of order 4 relate to the presence of τ lines in cholesterics.