Ian Robbins

Integration of Scientific Echo Sounders with an Adaptable Autonomous Vehicle to Extend Our Understanding of Animals from the Surface to the Bathypelagic

AbstractAcoustic echo sounders designed to map and discriminate organisms in the water column have primarily been deployed on ships. Because of acoustic attenuation of higher frequencies used to detect and discriminate micronekton and nekton, this has effectively restricted the range of this information to the upper water column. In an effort to overcome these range limitations by reducing the distance between the transducer and the targets of interest, dual-frequency (38 and 120 kHz) split-beam echo sounders were integrated into a Remote Environmental Monitoring Units (REMUS) 600 autonomous underwater vehicle (AUV), effectively doubling the range of quantitative acoustic data into the mesopelagic zone (600–1200 m). Data from the first set of missions in a range of conditions revealed that the AUV provided a stable platform for the echo sounders and improved vertical and horizontal positional accuracy over echo sounders towed by ships. In comparison to hull-mounted echo sounders, elimination of ship noise...

Oligonucleotide Primers for the Detection of Bioluminescent Dinoflagellates Reveal Novel Luciferase Sequences and Information on the Molecular Evolution of This Gene

Bioluminescence is reported in members of 18 dinoflagellate genera. Species of dinoflagellates are known to have different bioluminescent signatures, making it difficult to assess the presence of particular species in the water column using optical tools, particularly when bioluminescent populations are in nonbloom conditions. A “universal” oligonucleotide primer set, along with species and genus‐specific primers specific to the luciferase gene were developed for the detection of bioluminescent dinoflagellates. These primers amplified luciferase sequences from bioluminescent dinoflagellate cultures and from environmental samples containing bioluminescent dinoflagellate populations. Novel luciferase sequences were obtained for strains of Alexandrium cf. catenella (Whedon et Kof.) Balech and Alexandrium fundyense Balech, and also from a strain of Gonyaulax spinifera (Clap. et Whitting) Diesing, which produces bioluminescence undetectable to the naked eye. The phylogeny of partial luciferase sequences revealed five significant clades of the dinoflagellate luciferase gene, suggesting divergence among some species and providing clues on their molecular evolution. We propose that the primers developed in this study will allow further detection of low‐light‐emitting bioluminescent dinoflagellate species and will have applications as robust indicators of dinoflagellate bioluminescence in natural water samples.