Ik-Sung Ahn

Synthesis of magnetic/silica nanoparticles with a core of magnetic clusters and their application for the immobilization of His-tagged enzymes

We synthesized magnetic/silica nanoparticles with a core/shell structure. The average diameter of the spherical particles was approximately 100 nm, and the average thickness of the silica shell was 20 nm. Due to the core of the magnetic clusters, the particles exhibited strong magnetization (21 emu/g). To immobilize His-tagged lipase, copper complexes with three different ligands were anchored to the surfaces of the particles. Up to 70% of the initial activity was obtained after three uses. Differences in the enzymatic activity and ligand-dependent reusability are discussed.

Growth kinetics of Pseudomonas putida G7 on naphthalene and occurrence of naphthalene toxicity during nutrient deprivation

The objectives of this work were (1) to demonstrate how the chemostat approach could be modified to allow determination of kinetic parameters for a sparingly soluble, volatile substrate such as naphthalene and (2) to examine the influence of the interactions of various nutrients on possible growth-inhibitory effects of naphthalene. Pseudomonas putida G7 was used as a model naphthalene-degrading microorganism. Naphthalene was found to be toxic to P. putida G7 in the absence of a nitrogen source or oxygen. The death rate of cells grown on minimal medium plus naphthalene and then exposed to naphthalene under anoxic conditions was higher than that observed under oxic conditions in the absence of a nitrogen source. The presence of necessary nutrients for the biodegradation of PAH compounds is indicated to be important for the survival of microorganisms that are capable of PAH degradation. The amounts of ammonia and oxygen necessary for naphthalene biodegradation and for suppression of naphthalene toxicity were calculated from growth yield coefficients. A chemostat culture of P. putida G7 using naphthalene as a carbon and energy source was accomplished by using a feed augmented with a methanol solution of naphthalene so as to provide sufficient growth to allow accurate evaluation of kinetic parameters. When naphthalene was the growth-limiting substrate, the degradation of naphthalene followed Monod kinetics. Maximum specific growth rate (micrometer) and Monod constant (Ks) were 0.627 +/- 0.007 h-1 and 0.234 +/- 0.0185 mg/L, respectively. The evaluation of biodegradation parameters will allow a mathematical model to be applied to predict the long-term behavior of PAH compounds in soil when combined with PAH transport parameters.

Adhesion of nano-sized particles to the surface of bacteria: mechanistic study with the extended DLVO theory.

Due to the increasing production and application of nanoparticles, their release into the environment would be inevitable, which requires a better understanding of their fate in the environment. When considering their toxic behavior or biodegradation as their fate, their adhesion to the cell surface must be the first step to be thoroughly studied. In this study, nano-sized polymeric particles of urethane acrylate with various hydrophobicity and ionic properties were synthesized as model nanoparticles, and their adhesion to Pseudomonas putida strains was monitored. The higher hydrophobicity and positive charge density on the particle surface exhibited the larger adhesion to the bacteria, whereas negative charge density on the particle hindered their adhesion to the bacteria, albeit high hydrophobicity of particle. These observations were successfully explained with the extended Derjaguin-Landau-Verwey-Overbeek (DLVO) theory.

Phenanthrene desorption from soil in the presence of bacterial extracellular polymer: observations and model predictions of dynamic beheavior

The extracellular polymer produced by a bacterium isolated from soil was employed in laboratory studies of desorption of a model polynuelear aromatic hydrocarbon (PAH), phenanthrene. The experimental results show that the selected extracellular polymer enhances the extent of release of soil-bound phenanthrene. A kinetic model was developed as an aid in interpreting the alterations in phenanthrene desorption resulting from polymer addition. The model employs a statistical gamma (gamma) distribution to describe spectrum of rate constants for transfer of phenanthrene from soil to water, and assumes instantaneous binding of phenanthrene to polymer and of polymer to the test soil. The relevant distribution coefficients and statistical parameters of the gamma distribution needed for the model were evaluated in independent experiments. Using these measured parameters, the model provides a satisfactory independent prediction of phenanthrene release from soil to aqueous phase at two test polymer concentrations, 50 mg TOC/L and 100 mg TOC/L. The success of the independent model predictions suggests a mechanism for the influence of extracellular polymer on phenanthrene desorption. The intrinsic, soil-specific, rate constants for solid to solution transfer of phenanthrene do not appear to be changed by bacterial polymer. Instead, polymer binding of phenanthrene in solution results in an increase in driving force for desorption by decreasing the solution concentration of the free, unbound, PAH molecule.

Heparin-coated superparamagnetic nanoparticle-mediated adeno-associated virus delivery for enhancing cellular transduction

Superparamagnetic iron oxide nanoparticles (SPIONs) have been exploited as an elegant vehicle to enhance gene delivery efficiencies in gene therapy applications. We developed a magnetically guided adeno-associated virus (AAV) delivery system for enhancing gene delivery to HEK293T and PC12 cell lines. Wild-type AAV2 and a novel AAV vector, AAVr3.45, which was directly evolved in a previous study to possess diverse cell tropisms, were used as gene carriers. Additionally, the affinity of each viral vector to heparin was employed as a moiety to immobilize virus onto heparin-coated SPIONs (HpNPs). Magnetically guided AAV delivery resulted fast and efficient cellular transduction. Importantly, a short exposure of virus to target cells under a magnetic field (<180min) yielded comparable transduction produced by the conventional gene-delivery protocol (i.e., 24h-incubation of virus with target cells prior to replacing with fresh medium). Additionally, magnetic guidance of AAV encoding nerve growth factor (NGF) produced sufficient functional NGF, leading to robust neurite elongation by PC12 as compared to direct NGF protein delivery or non-magnetic delivery. The successful establishment of a magnetically guided AAV delivery system, with the ability to efficiently and rapidly infect target cells, will provide a powerful platform for a variety of gene therapy applications.

Evaluation of a silica-coated magnetic nanoparticle for the immobilization of a His-tagged lipase

Magnetic particles of size 10 nm have been coated with silica to a mean diameter of 40 nm and charged with Cu2+ ions via a multidentate ligand, iminodiacetic acid (IDA), for the immobilization of His-tagged Bacillus stearothermopilus L1 lipase. Microporous (average pore diameter of 60 Å) silica gel with a mean particle diameter of 115 µm has been used as a comparative support material. The molar ratio of Cu2+ to IDA was found to be 1:1.14 and 1:1.99 in the silica gel and the silica-coated magnetic nanoparticles (SiMNs), respectively. The specific activity of the immobilized enzyme was found to conform to the following order: Cu2+-charged SiMN>SiMN>Cu2+-charged silica gel>silica gel. When it was immobilized on the Cu2+-charged SiMNs, over 70% of the initial activity of the lipase remained after it had been reused five times. However, only 20% of the initial activity remained after the enzyme immobilized on the Cu2+-charged silica gel had been reused five times. For the enzyme immobilized on supports without Cu2+ cations, all activity was lost after threefold reuse. The differences in the specific activities and the efficiencies of reuse of the enzymes immobilized on the various support materials are discussed in terms of immobilization mechanisms (physical adsorption vs. coordination bonding), mass transfer of a substrate and a product of the enzyme reaction, and the status of the Cu (Cu bound to the IDA on the silica layer vs. Cu directly adsorbed on the silica layer).

Microscale-based modeling of polynuclear aromatic hydrocarbon transport and biodegradation in soil

A mathematical model to describe polynuclear aromatic hydrocarbon (PAH) desorption, transport, and biodegradation in saturated soil was constructed by describing kinetics at a microscopic level and incorporating this description into macroscale transport equations. This approach is novel in that the macroscale predictions are made independently from a knowledge of microscale kinetics and macroscopic fluid dynamics and no adjustable parameters are used to fit the macroscopic response. It was assumed that soil organic matter, the principal site of PAH sorption, was composed of a continuum of compartments with a gamma distribution of desorption rate coefficients. The mass transport of substrates and microorganisms in a mesopore was described by diffusion and that in a macropore by one‐dimensional advection and dispersion. Naphthalene was considered as a test PAH compound for initial model simulations. Three mechanisms of naphthalene biodegradation were considered: growth‐associated degradation as a carbon and energy source for microbial growth; degradation for maintenance energy; and growth‐independent degradation. The Haldane modification of the Monod equation was used to describe microbial growth rates and to account for possible growth inhibition by naphthalene. Multisubstrate interactions were considered and described with a noninteractive model for specific growth rates. The sensitivity of selected model parameters was analyzed under conditions when naphthalene was the sole growth‐rate‐limiting substrate. The time necessary to achieve a specific degree of naphthalene biodegradation was found to be proportional to the initial concentration of naphthalene in soil organic matter. The biodegradation rate of naphthalene increased when the sorption equilibrium constant of naphthalene was reduced. The presence of an alternative carbon source inhibited naphthalene biodegradation in spite of the calculated increase in biomass.

Highly efficient production of monoglycerides by the continuous removal of fatty acids from lipase-catalyzed oil hydrolysis

Highly efficient production of monoglycerides was achieved from lipase-catalyzed oil hydrolysis by the continuous addition of CaCl2 to remove the fatty acids produced. A fusion protein produced by connecting a cellulose-binding domain of Trichoderma hazianum cellulase to Bacillus stearothermophilus L1 lipase was used as a model 1,3-regiospecific lipase. The reaction was performed at pH 10 and 50°C, and the relationship between continuous removal of fatty acids and the production of monoglyceride was investigated by microscopic and HPLC analysis of oil emulsions and the reaction products. Without the addition of Ca2 + the reaction was inhibited by fatty acids, with the decrease in reaction rate being proportional to the concentration of fatty acids. When CaCl2 was continuously added in a 1:2 molar ratio with the released fatty acids, the reaction progressed unimpeded due to the formation of Ca-soaps. Both the yield and the fraction of monoglyceride in the reaction product increased due to the continuous removal of fatty acids.

Magnetically enhanced adeno-associated viral vector delivery for human neural stem cell infection

Gene therapy technology is a powerful tool to elucidate the molecular cues that precisely regulate stem cell fates, but developing safe vehicles or mechanisms that are capable of delivering genes to stem cells with high efficiency remains a challenge. In this study, we developed a magnetically guided adeno-associated virus (AAV) delivery system for gene delivery to human neural stem cells (hNSCs). Magnetically guided AAV delivery resulted in rapid accumulation of vectors on target cells followed by forced penetration of the vectors across the plasma membrane, ultimately leading to fast and efficient cellular transduction. To combine AAV vectors with the magnetically guided delivery, AAV was genetically modified to display hexa-histidine (6xHis) on the physically exposed loop of the AAV2 capsid (6xHis AAV), which interacted with nickel ions chelated on NTA-biotin conjugated to streptavidin-coated superparamagnetic iron oxide nanoparticles (NiStNPs). NiStNP-mediated 6xHis AAV delivery under magnetic fields led to significantly enhanced cellular transduction in a non-permissive cell type (i.e., hNSCs). In addition, this delivery method reduced the viral exposure times required to induce a high level of transduction by as much as to 2-10 min of hNSC infection, thus demonstrating the great potential of magnetically guided AAV delivery for numerous gene therapy and stem cell applications.

Oxidation of 17α-ethinylestradiol with Mn(III) and product identification

With increasing concern about the contamination of aquatic environments by estrogenic pollutants, removal of synthetic estrogens such as 17alpha-ethinylestradiol (EE2) has been widely studied, especially with respect to the treatment methods. However, the degradation products have rarely been identified. The purpose of this study was to identify structurally the oxidation products of EE2. Mn(III) was used as an oxidizing agent. To obtain sufficient oxidation products for HPLC, LC-MS and NMR spectroscopy, a highly concentrated solution of EE2 (1mM) was prepared in a mixture of water and a water-miscible organic solvent. From HPLC of the reaction products, a single compound (I) was found to be predominant. From LC-MS, its molecular mass was found to be 294, and two hydrogens were believed to have been removed from EE2 (M.W. 296) to form a C=C . The structure of compound I (position of the double bond) was determined using 1H NMR, 13C NMR, H-H COSY, HSQC and HMBC. As minor products, isomeric dimers (M.W. 590) of EE2, as well as the products (M.W. 588) in which EE2 was coupled to compound I were also formed during the Mn(III)-mediated oxidation of EE2.