Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Inna Dubchak is active.

Publication


Featured researches published by Inna Dubchak.


Bioinformatics | 2007

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities

Shengyin Gu; Iain Anderson; Victor Kunin; Michael J. Cipriano; Simon Minovitsky; Gunther H. Weber; Nina Amenta; Bernd Hamann; Inna Dubchak

UNLABELLED We describe a general multiplatform exploratory tool called TreeQ-Vista, designed for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly interface which provides a set of tools for users with or without SQL knowledge. The query results are projected onto a phylogenetic tree and can be displayed in multiple color groups. A rich set of browsing, grouping and query tools are provided to facilitate trait exploration, comparison and analysis. AVAILABILITY The program, detailed tutorial and examples are available online (http:/genome.lbl.gov/vista/TreeQVista).


Archive | 2012

Genome Portal, Joint Genome Institute

Igor V. Grigoriev; Susannah G. Tringe; Inna Dubchak


Archive | 2010

Regulon inference without arbitrary thresholds: three levels of sensitivity

Dubchak, Pavel Novichkov, Elena Stavrovskaya, Dmitry Rodionov, Andrey Mironov, Inna; Dmitry A. Rodionov; Andrey A. Mironov; Inna Dubchak; Pavel S. Novichkov


3rd Annual Joint Conference on Systems Biology, Regulatory Genomics and Reverse Engineering Challenges; New York City, NY; November 16 - 20, 2010 | 2010

In silico discovery of the dormancy regulons in a number of Actinobacteria genomes

Anna V. Gerasimova; Inna Dubchak; Adam P. Arkin; Mikhail Gelfand


Archive | 2009

Comparative Genomics Tools for analysis of Six Dothideomycete Genomes

Andrea Aerts; Simon Minovitsky; Michael N. Cantor; Inna Dubchak; Igor Shabalov; Igor Grigoriev; Igor Ratnere


Archive | 2009

The Automatic Selection of TFBS Score Threshold in Comparative Genomics Approach

Elena D. Stavrovskaya; Dmitry A. Rodionov; Andrey A. Mironov; Inna Dubchak; Pavel S. Novichkov


Archive | 2009

Web-based Tool for Fast and Accurate de novo Inference of Regulons in the Sets of Closely Related Bacterial Genomes

Pavel S. Novichkov; Elena D. Stavrovskaya; Mikhail Gelfand; Andrey A. Mironov; Inna Dubchak; Dmitry A. Rodionov


Archive | 2009

The VISTA Synteny Viewer: Navigating Whole Genome Alignments at Multiple Levels of Resolution

Michael N. Cantor; Simon Minovitsky; Igor Ratnere; Inna Dubchak


Archive | 2008

IMG/M: A data management and analysis system for metagenomes - eScholarship

Victor Markowitz; Natalia Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A. Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Phil Hug enholtz; Nikos C. Kyrpides


Archive | 2008

The analysis and expansion of regulatory binding site data in a wide range of bacteria using a semi-automatic system - RegTransBase

Pavel S. Novichkov; Michael J. Cipriano; Alexey S. Kazakov; Dmitry A. Ravcheev; Adam P. Arkin; Mikhail Gelfand; Inna Dubchak

Collaboration


Dive into the Inna Dubchak's collaboration.

Top Co-Authors

Avatar

Simon Minovitsky

Lawrence Berkeley National Laboratory

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Edward M. Rubin

United States Department of Energy

View shared research outputs
Top Co-Authors

Avatar

Pavel S. Novichkov

Children's Hospital Oakland Research Institute

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Nameeta Shah

University of California

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Alexander Poliakov

Lawrence Berkeley National Laboratory

View shared research outputs
Top Co-Authors

Avatar

Iain Anderson

University of California

View shared research outputs
Researchain Logo
Decentralizing Knowledge