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Dive into the research topics where J. A. Rooke is active.

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Featured researches published by J. A. Rooke.


Livestock Production Science | 2000

The effect of space allowance on performance, aggression and immune competence of growing pigs housed on straw deep-litter at different group sizes.

Simon P. Turner; M. Ewen; J. A. Rooke; S. A. Edwards

Legislation controlling minimum floor space allowances for pigs rarely allows flexibility for variations in the physical and social environment. The space requirement of pigs housed in large groups and on deep-straw bedding has not been adequately addressed. Pigs, housed on deep-straw for 6 weeks in groups of 20 or 80, were provided with a low (50 kg/m2) or high (32 kg/m2) space allowance in an experiment of 2×2 factorial design replicated four times. Low space allowance, irrespective of group size, did not influence average daily gain (ADG), but tended to improve efficiency of growth (P<0.1). Groups of 80 pigs had a lower ADG than groups of 20 (0.684 vs. 0.732 S.E.D. 0.0142 kg/day, P<0.01). Within pen variation in ADG was similar for each treatment. Number of skin lesions were elevated by low space allowance (10.1 vs. 8.5 s.e.d. 0.68 lesions per pig for low and high space allowance respectively, P<0.05). The humoral response to an antigen challenge (Newcastle disease virus) was lower when provided with small space allowance (P<0.01). Since the main effects did not interact, the poorer ADG of large groups, and the higher lesion score and suppressed immune response of pigs provided with lower space allowance, suggest that these conditions may independently compromise productivity and welfare.


Animal Science | 2001

The effect of feeding salmon oil to sows throughout pregnancy on pre-weaning mortality of piglets

J. A. Rooke; A.G. Sinclair; S. A. Edwards; Cordoba R; Pkiyach S; Penny Pc; Penny P; Angela M. Finch; Graham W. Horgan

Salmon oil (16·5 kg /t), a source of long-chain polyunsaturated n-3 fatty acids, was included in diets offered to multiparous sows during pregnancy and lactation to measure responses in pre-weaning mortality and performance of piglets in two studies. The first study, carried out under commercial conditions, included 196 sows which were offered salmon oil and control diets from immediately post service until weaning. The same diets were also offered to 10 sows per treatment from day 58 of pregnancy in a controlled nutritional study which measured the effects of salmon oil on piglet tissue fatty acid composition. Offering salmon oil to the sow significantly increased gestation length and decreased individual piglet birth weight but had no effect on litter size at birth. Overall, salmon oil reduced pre-weaning mortality from 11·7% to 10·2% mainly by reducing the incidence of deaths from crushing by the sow. More detailed analysis of mortality using a general linear mixed model and 2294 piglet records, demonstrated that the incidence of pre-weaning mortality was significantly decreased with increasing individual piglet birth weight and by inclusion of salmon oil in the diet; the incidence of mortality increased with average piglet birth weight in a litter. Salmon oil inclusion had no effect on weight of litter weaned, sow lactation food intake or subsequent reproductive performance. In both studies, dietary salmon oil increased the proportions of long-chain n-3 polyunsaturated fatty acids in colostrum to a similar extent. In the nutritional study, inclusion of salmon oil reduced the proportions of 20: 4 n-6 in piglet liver and brain at birth and increased the proportions of long-chain n-3 polyunsaturated fatty acids. Therefore, despite reducing piglet birth weight, offering sows salmon oil reduced pre-weaning mortality of piglets. The nutritional study showed that the amount and type of marine oil used may not have been optimal.


British Journal of Nutrition | 2001

Feeding tuna oil to the sow at different times during pregnancy has different effects on piglet long-chain polyunsaturated fatty acid composition at birth and subsequent growth

J. A. Rooke; A.G. Sinclair; S. A. Edwards

In an attempt to prevent decreases in piglet 20 : 4n-6 status at birth while increasing 22 : 6n-3 status, multiparous sows (eight per treatment) were allocated to one of three different treatments: a basal diet fed from day 63 of pregnancy to term; basal diet supplemented with tuna oil (17.5 g/kg) from day 63 to day 91 and then basal diet alone from day 92 to term; basal diet alone from day 63 to day 91 and then basal diet supplemented with tuna oil from day 92 to term. Tuna oil supplementation increased mainly 22 : 6n-3 intake. Supplementation with tuna oil between day 92 and term increased 22 : 6n-3 to a greater extent in all piglet tissues (brain, liver, retina and the remaining carcass) at birth than supplementation with tuna oil between days 63 and 91. However, while piglet 20 : 4n-6 decreased to a greater extent in liver and carcass when diets were supplemented with tuna oil between days 92 and term than between days 63 and 91, in the brain and retina, the reverse was true; 20 : 4n-6 was decreased to a greater extent between days 63 and 91 than between 92 and term. The effect of pregnancy nutrition on the growth of piglets until 7 d postweaning (35 d of age) was assessed after removing any residual effects of pregnancy treatment by cross-fostering some piglets at birth. Piglets, the diets of whose dams had been supplemented with tuna oil during pregnancy, grew faster during the first 35 d of life than the progeny of sows fed only the basal diet. Feeding tuna oil to sows at different times during pregnancy therefore did not prevent decreases in piglet 20 : 4n-6 status at birth, but did suggest that changes in piglet brain 20 : 4n-6 status between days 63 and 91 of pregnancy were not reversible by later nutrition. Supplementing the diet of the pregnant sow with tuna oil had beneficial effects on postnatal piglet growth.


PLOS Genetics | 2016

Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance.

Rainer Roehe; Richard J. Dewhurst; Carol-Anne Duthie; J. A. Rooke; Nest McKain; Dave Ross; J. J. Hyslop; Anthony Waterhouse; Tom C. Freeman; Michael Watson; R. John Wallace

Methane produced by methanogenic archaea in ruminants contributes significantly to anthropogenic greenhouse gas emissions. The host genetic link controlling microbial methane production is unknown and appropriate genetic selection strategies are not developed. We used sire progeny group differences to estimate the host genetic influence on rumen microbial methane production in a factorial experiment consisting of crossbred breed types and diets. Rumen metagenomic profiling was undertaken to investigate links between microbial genes and methane emissions or feed conversion efficiency. Sire progeny groups differed significantly in their methane emissions measured in respiration chambers. Ranking of the sire progeny groups based on methane emissions or relative archaeal abundance was consistent overall and within diet, suggesting that archaeal abundance in ruminal digesta is under host genetic control and can be used to genetically select animals without measuring methane directly. In the metagenomic analysis of rumen contents, we identified 3970 microbial genes of which 20 and 49 genes were significantly associated with methane emissions and feed conversion efficiency respectively. These explained 81% and 86% of the respective variation and were clustered in distinct functional gene networks. Methanogenesis genes (e.g. mcrA and fmdB) were associated with methane emissions, whilst host-microbiome cross talk genes (e.g. TSTA3 and FucI) were associated with feed conversion efficiency. These results strengthen the idea that the host animal controls its own microbiota to a significant extent and open up the implementation of effective breeding strategies using rumen microbial gene abundance as a predictor for difficult-to-measure traits on a large number of hosts. Generally, the results provide a proof of principle to use the relative abundance of microbial genes in the gastrointestinal tract of different species to predict their influence on traits e.g. human metabolism, health and behaviour, as well as to understand the genetic link between host and microbiome.


Theriogenology | 2001

Feed and forage toxicants affecting embryo survival and fetal development

T.G. McEvoy; J.J. Robinson; C.J. Ashworth; J. A. Rooke; Kevin D. Sinclair

Early embryonic and fetal development in mammals is sensitive to deficiencies and excesses of specific nutrients and toxicants. Operating directly and/or indirectly, these deficiencies and excesses can result in embryonic death or, in less severe circumstances, disruption of normal embryo and fetal growth. This paper explores the threats posed by feed and forage toxicants to the developing embryo and their impact on early programming of fetal development. Using significant examples, we consider the relevance of temporal sensitivities during early development in utero, and their implications for the morphology and functional competence of specific organs and tissues.


Reproduction, Fertility and Development | 2003

Consequences of exposure to serum, with or without vitamin E supplementation, in terms of the fatty acid content and viability of bovine blastocysts produced in vitro

A. Reis; J. A. Rooke; G.J. McCallum; M.E. Staines; M. Ewen; Michael A. Lomax; T.G. McEvoy

To determine whether serum supplementation influenced fatty acid content of bovine blastocysts and whether vitamin E addition to culture medium containing serum could improve development in vitro, cleaved eggs were cultured in synthetic oviduct fluid supplemented with bovine serum albumin (BSA, 0.4% w/v, fraction V) (SVBSA), fetal calf serum (FCS, 10% v/v) (SFCS) or FCS (10% v/v) plus 100 micro M vitamin E (SFCS + E). Blastocyst yields were recorded and fatty acid composition was determined by gas chromatography. Day 7 blastocysts were incubated with [2-(14)C] pyruvate for 3 h and then fixed for cell counts. Yields of good quality blastocysts were greatest from cleaved eggs cultured in serum-free conditions (P < 0.01). In the presence of serum, supplementation with vitamin E increased both total and good quality blastocyst yields (P < 0.01). Presence of serum increased fatty acid content (mean +/- SEM) of blastocysts (SVBSA v. SFCS = 57 +/- 2 v. 74 +/- 2 ng embryo(-1); P < 0.001). In contrast, pyruvate metabolism was greater in blastocysts produced without serum (27 +/- 3 v. 21 +/- 3 picomoles embryo(-1) 3h(-1); P < 0.01) but, on a per cell basis, no differences were detected. Addition of vitamin E to the serum-supplemented formulation did not alter either the fatty acid content (73 +/- 2 ng embryo(-1)) or pyruvate metabolism index (19 +/- 1 pmol embryo(-1) 3h(-1)) of SFCS + E blastocysts. Thus, despite lipid accumulation, supplementary vitamin E improved blastocyst yields in embryos exposed to serum.


British Journal of Nutrition | 2014

Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype.

J. A. Rooke; R. John Wallace; Carol-Anne Duthie; Nest McKain; Shirley Motta de Souza; J. J. Hyslop; D. W. Ross; Tony Waterhouse; Rainer Roehe

The aims of the present study were to quantify hydrogen (H2) and methane (CH4) emissions from beef cattle under different dietary conditions and to assess how cattle genotype and rumen microbial community affected these emissions. A total of thirty-six Aberdeen Angus-sired (AAx) and thirty-six Limousin-sired (LIMx) steers were fed two diets with forage:concentrate ratios (DM basis) of either 8:92 (concentrate) or 52:48 (mixed). Each diet was fed to eighteen animals of each genotype. Methane (CH4) and H2 emissions were measured individually in indirect respiration chambers. H2 emissions (mmol/min) varied greatly throughout the day, being highest after feed consumption, and averaged about 0·10 mol H2/mol CH4. Higher H2 emissions (mol/kg DM intake) were recorded in steers fed the mixed diet. Higher CH4 emissions (mol/d and mol/kg DM intake) were recorded in steers fed the mixed diet (P< 0·001); the AAx steers produced more CH4 on a daily basis (mol/d, P< 0·05) but not on a DM intake basis (mol/kg DM intake). Archaea (P= 0·002) and protozoa (P< 0·001) were found to be more abundant and total bacteria (P< 0·001) less abundant (P< 0·001) on feeding the mixed diet. The relative abundance of Clostridium cluster IV was found to be greater (P< 0·001) and that of cluster XIVa (P= 0·025) lower on feeding the mixed diet. The relative abundance of Bacteroides plus Prevotella was greater (P= 0·018) and that of Clostridium cluster IV lower (P= 0·031) in the LIMx steers. There were no significant relationships between H2 emissions and microbial abundance. In conclusion, the rate of H2 production immediately after feeding may lead to transient overloading of methanogenic archaea capacity to use H2, resulting in peaks in H2 emissions from beef cattle.


Livestock Production Science | 2003

Relationships between passive absorption of immunoglobulin G by the piglet and plasma concentrations of immunoglobulin G at weaning

J. A. Rooke; C. Carranca; I.M. Bland; A.G. Sinclair; M. Ewen; V.C. Bland; S. A. Edwards

Abstract To examine the relationships between passive acquisition of immunoglobulin G (IgG) by piglets from colostrum and concentrations of plasma IgG at weaning, IgG concentrations in the blood plasma of piglets naturally suckling the sow were measured in the first week of life and at 28 days of age in three experiments. In two experiments the quantities of specific antibodies (anti-Newcastle disease virus, NDV) transferred from the sow to the piglet in colostrum were also quantified. The concentrations of IgG in piglet plasma at 28 days of age were significantly and positively related to concentrations in plasma at 2 and 7 days of age. NDV–IgG in piglet plasma declined more rapidly than total IgG between 7 and 28 days of age, but not between 2 and 7 days of age. In one experiment, concentrations of IgG in piglet plasma at 28 and 35 days of age were related to the diet the sow received during pregnancy, with diets including marine oil giving higher values. Estimates were made of the total amount (rather than concentration) of IgG in piglet plasma at different ages and these showed that amounts of IgG increased between 7 and 28 days of age, but not between 2 and 7 days; a similar conclusion was made from the dilution of NDV IgG in piglet plasma. Therefore, these estimates suggested that naturally suckling piglets begin synthesising IgG from 7 days of age and that the amounts of IgG synthesised are positively correlated with the amounts of IgG absorbed from colostrum.


Scientific Reports | 2015

Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle

R. John Wallace; J. A. Rooke; Carol-Anne Duthie; J. J. Hyslop; D. W. Ross; Nest McKain; Shirley Motta de Souza; Timothy J. Snelling; Anthony Waterhouse; Rainer Roehe

Methane produced from 35 Aberdeen-Angus and 33 Limousin cross steers was measured in respiration chambers. Each group was split to receive either a medium- or high-concentrate diet. Ruminal digesta samples were subsequently removed to investigate correlations between methane emissions and the rumen microbial community, as measured by qPCR of 16S or 18S rRNA genes. Diet had the greatest influence on methane emissions. The high-concentrate diet resulted in lower methane emissions (P < 0.001) than the medium-concentrate diet. Methane was correlated, irrespective of breed, with the abundance of archaea (R = 0.39), bacteria (−0.47), protozoa (0.45), Bacteroidetes (−0.37) and Clostridium Cluster XIVa (−0.35). The archaea:bacteria ratio provided a stronger correlation (0.49). A similar correlation was found with digesta samples taken 2–3 weeks later at slaughter. This finding could help enable greenhouse gas emissions of large animal cohorts to be predicted from samples taken conveniently in the abattoir.


British Journal of Nutrition | 2001

Changes in piglet tissue composition at birth in response to increasing maternal intake of long-chain n-3 polyunsaturated fatty acids are non-linear.

J. A. Rooke; A.G. Sinclair; M. Ewen

Addition of marine oils containing long-chain n-3 polyunsaturated fatty acids to the diet of pregnant sows may reduce piglet mortality. In previous experiments, when marine oils have been fed to pregnant sows, improvements in piglet tissue 22 : 6n-3 status have been accompanied by potentially undesirable decreases in 20 : 4n-6. The objective of the present experiment was to establish an amount of dietary salmon oil which would enhance piglet 22 : 6n-3 status while minimising reductions in 20 : 4n-6. Twenty-four pregnant multiparous sows were used in the experiment which began on day 60 of pregnancy (gestation length 115 d). To give four diets, salmon oil was added in increasing amounts (0, 5, 10 and 20 g/kg diet) to a basal diet; the diets were made isoenergetic by adding palm oil to each diet to give a total of 20 g oil/kg diet. Diets were offered to the sows in fixed amounts (2.5 kg/d) until parturition. Piglet tissue samples (brain, liver and retina) were obtained at birth before consumption of colostrum. The greatest increase in piglet tissue 22 : 6n-3 proportions occurred between 0 and 5 g salmon oil/kg diet, with only small increases between 10 and 20 g salmon oil/kg diet. In contrast, tissue 20 : 4n-6 proportions declined progressively as the amount of salmon oil fed to the sow increased. In brain, the change in the value 22 : 6n-3/22 : 5n-6 was greatest between 0 and 5 g salmon oil/kg diet, whereas in liver the value increased linearly with added salmon oil. In addition, piglet brain weight (g/kg live weight) increased to a maximum at 10 g salmon oil/kg diet. The optimum amount of supplementary salmon oil in the current experiment, defined as that which gave the greatest response in brain 22 : 6n-3 proportions with minimum reduction in 20 : 4n-6,was 10 g salmon oil/kg diet. This corresponds to an intake of approximately 2.4 g 20 : 5n-3 plus 3.6 g 22 : 6n-3/d or 0.6 % digestible energy.

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T.G. McEvoy

Scottish Agricultural College

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Rainer Roehe

Scotland's Rural College

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Cathy Dwyer

Scotland's Rural College

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J. J. Hyslop

Scotland's Rural College

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M. Ewen

Scottish Agricultural College

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J.J. Robinson

Scottish Agricultural College

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