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Dive into the research topics where J. David Allan is active.

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Featured researches published by J. David Allan.


BioScience | 1997

The Natural Flow Regime

N. LeRoy Poff; J. David Allan; Mark B. Bain; James R. Karr; Karen L. Prestegaard; Brian Richter; Richard E. Sparks; Julie C. Stromberg

H umans have long been fascinated by the dynamism of free-flowing waters. Yet we have expended great effort to tame rivers for transportation, water supply, flood control, agriculture, and power generation. It is now recognized that harnessing of streams and rivers comes at great cost: Many rivers no longer support socially valued native species or sustain healthy ecosystems that provide important goods and services (Naiman et al. 1995, NRC 1992).


Ecology | 1995

Functional organization of stream fish assemblages in relation to hydrological variability

N. LeRoy Poff; J. David Allan

Stream fish assmemblage data for 34 sites in Wisconsin and Minnesota were obtained from archived sources and were used in conjunction with long—term hydrological data to test the hypothesis that functional organization of fish communities is related to hydrological variability. For each of the 106 species present in the data set, six categories of species traits were derived to describe habitat, trophic, morphologica, and tolerance characteristics. A hierarchical clustering routine was used to identify two functionally similar groups of assemblages defined in terms of species presence/absence. Hydrological factors describing streamflow variability and predictability, as well as frequency and predictability of high flow and low flow extremes, were derived for each of the 34 sites and employed to explain differences among the functionally defined groups. Canonical discriminant analysis revealed that the hydrological data could clearly separate the two ecologically defined groups of assemblages, which were associated with either hydrologically variable streams (high coefficient of variation of daily flows, moderate frequency of spates) or hydrologically stable streams (high predictability of daily flows, stable baseflow conditions). Discriminant functions based on hydrological information classified the 34 fish assemblages into the correct ecological group with 85% accuracy. Assemblages from hydrologically variable sites had generalized feeding strategies, were associated with silt and general substrata, were characterized by slow—velocity species with headwater affinities, and were tolerant to silt. Proportions of species traits present at the 34 sites were regressed against an index of hydrological stability derived from a principal components analysis to test the hypothesis that functional organization of assemblages varied across a gradient of hydrological stability. Results were complementary with the discriminant analysis. Findings were in general agreement with theoretical predictions that variable should support resource generalists while stable habitats should be characterized by a higher proportion of specialist species. Several species of fish were identified as indicative of the variable—stable hydrological gradient among stream sites. A taxonomic analysis showed strong geographic patterns in species composition of the 34 assemblages. However, zoogeographic constraints did not explain the observed relationship between stream hydrology and functional organization of fish assemblages. The strong hydrological—assemblage relations found in the 34 midwestern sites suggest that hydrological factors are significant environmental variables influencing fish assemblage structure, and that hydrological alterations induced by climate change (or other anthropogenic disturbances) could modify stream fish assemblages structure in this region.


Landscape Ecology | 1996

Landscape influences on stream biotic integrity assessed at multiple spatial scales

Nancy E. Roth; J. David Allan; Donna L. Erickson

The biological integrity of stream ecosystems depends critically on human activities that affect land use/cover along stream margins and possibly throughout the catchment. We evaluated stream condition using an Index of Biotic Integrity (IBI) and a habitat index (HI), and compared these measures to landscape and riparian conditions assessed at different spatial scales in a largely agricultural Midwestern watershed. Our goal was to determine whether land use/cover was an effective predictor of stream integrity, and if so, at what spatial scale. Twenty-three sites in first-through third-order headwater streams were surveyed by electrofishing and site IBIs were calculated based on ten metrics of the fish collection. Habitat features were characterized through field observation, and site HIs calculated from nine instream and bank metrics. Field surveys, aerial photograph interpretation, and geographic information system (GIS) analyses provided assessments of forested land and other vegetation covers at the local, reach, and regional (catchment) scales.The range of conditions among the 23 sites varied from poor to very good based on IBI and HI scores, and habitat and fish assemblage measures were highly correlated. Stream biotic integrity and habitat quality were negatively correlated with the extent of agriculture and positively correlated with extent of wetlands and forest. Correlations were strongest at the catchment scale (IBI with % area as agriculture, r2=0.50, HI with agriculture, r2=0.76), and tended to become weak and non-significant at local scales. Local riparian vegetation was a weak secondary predictor of stream integrity. In this watershed, regional land use is the primary determinant of stream conditions, able to overwhelm the ability of local site vegetation to support high-quality habitat and biotic communities.


The American Naturalist | 1976

LIFE HISTORY PATTERNS IN ZOOPLANKTON

J. David Allan

Freshwater zooplankton exhibit a continuum of compromises in their means of meeting the presumably conflicting demands of maximizing the potential for rapid increase, predator avoidance, and competitive ability. Rotifers and cladocerans both alternate parthenogenetic and sexual reproduction and attain high rates of increase relative to copepods. The rapidly developing small-clutch rotifers surpass more slowly developing large-clutch cladocerans in rmax. Copepods appear to consume food in a wider range of particle sizes, exhibit a greater capacity for selective feeding, and possess a greater ability in predator avoidance. Hence, ranking of three major taxa of freshwater zooplankton with respect to opportunism is: rotifers > cladocerans > copepods. These results are utilized to interpret some principal biogeographic trends in plankton composition, including the rarity or nearly complete absence of rotifers and cladocerans from the open oceans and deeper waters of large lakes. Patterns in the timing and sharpness of seasonal abundance peaks are also consistent with this interpretation, although complexities in timing occur owing to intrataxon variation in keying to seasonal fluctuations.


BioScience | 2005

Overfishing of Inland Waters

J. David Allan; Robin Abell; Zeb Hogan; Carmen Revenga; Brad W. Taylor; Robin Welcomme

Abstract Inland waters have received only slight consideration in recent discussions of the global fisheries crisis, even though inland fisheries provide much-needed protein, jobs, and income, especially in poor rural communities of developing countries. Systematic overfishing of fresh waters is largely unrecognized because of weak reporting and because fishery declines take place within a complex of other pressures. Moreover, the ecosystem consequences of changes to the species, size, and trophic composition of fish assemblages are poorly understood. These complexities underlie the paradox that overexploitation of a fishery may not be marked by declines in total yield, even when individual species and long-term sustainability are highly threatened. Indeed, one of the symptoms of intense fishing in inland waters is the collapse of particular stocks even as overall fish production rises—a biodiversity crisis more than a fisheries crisis.


Frontiers in Ecology and the Environment | 2003

River flows and water wars: emerging science for environmental decision making

N. LeRoy Poff; J. David Allan; Margaret A. Palmer; David D. Hart; Brian Richter; Angela H. Arthington; Kevin H. Rogers; Judy L. Meyer; Jack A. Stanford

Real and apparent conflicts between ecosystem and human needs for fresh water are contributing to the emergence of an alternative model for conducting river science around the world. The core of this new paradigm emphasizes the need to forge new partnerships between scientists and other stakeholders where shared ecological goals and river visions are developed, and the need for new experimental approaches to advance scientific understanding at the scales relevant to whole-river management. We identify four key elements required to make this model succeed: existing and planned water projects represent opportunities to conduct ecosystem-scale experiments through controlled river flow manipulations; more cooperative interactions among scientists, managers, and other stakeholders are critical; experimental results must be synthesized across studies to allow broader generalization; and new, innovative funding partnerships are needed to engage scientists and to broadly involve the government, the private sector, and NGOs.


Ecology | 1982

THE EFFECTS OF REDUCTION IN TROUT DENSITY ON THE INVERTEBRATE COMMUNITY OF A MOUNTAIN STREAM

J. David Allan

An experimental reduction in trout density was carried out for 4 yr to determine whether the numbers or species composition of aquatic invertebrates would be affected. In a Colorado stream, the standing crop of trout (mainly Salvelinus fontinalis) prior to this study was 4.86 g/m2, typical of infertile trout streams. Repeated electroshocking of a 1220 m long experimental section kept trout stocks at 10-25% of this initial value during the summers of 1975-1978. Density of invertebrates in the benthos (number of invertebrates per square metre) showed no consistent differences between the trout removal section and upstream and downstream control sec- tions for the majority of taxa examined. Drift density (number of invertebrates per 1000 cubic metres) also failed to show an effect of the trout removal. Some taxa were significantly more abundant at one site than another, but this was attributable to changes along the stream gradient or differences in phenology among the sites rather than experimental reduction of trout. As trout stomach content analysis revealed very intensive grazing on a few taxa of aquatic insects, their failure to increase in the trout removal section was unexpected. Statistical analysis showed that because of the variability of the system, a doubling or halving of numbers must occur to be detectable. Within these limits, it is concluded that removal of trout had no significant effect on the prey community, and two explanations are offered. Trout may actually consume only a small fraction of total prey, although this conclusion is limited by inability of current techniques to sample the benthos fully. It is also likely that because streams do not provide areas where fish are predictably absent, the invertebrate community is highly adapted to fish predation and so is not sensitive to manipulations in fish density.


Proceedings of the National Academy of Sciences of the United States of America | 2013

Joint analysis of stressors and ecosystem services to enhance restoration effectiveness

J. David Allan; Peter B. McIntyre; Sigrid D. P. Smith; Benjamin S. Halpern; Gregory L. Boyer; Andy Buchsbaum; Linda M. Campbell; W. Lindsay; Jan J.H. Ciborowski; Patrick J. Doran; Tim Eder; Dana M. Infante; Lucinda B. Johnson; Christine A. Joseph; Adrienne L. Marino; Alexander Prusevich; Joan B. Rose; Edward S. Rutherford; Scott P. Sowa; Alan D. Steinman

With increasing pressure placed on natural systems by growing human populations, both scientists and resource managers need a better understanding of the relationships between cumulative stress from human activities and valued ecosystem services. Societies often seek to mitigate threats to these services through large-scale, costly restoration projects, such as the over one billion dollar Great Lakes Restoration Initiative currently underway. To help inform these efforts, we merged high-resolution spatial analyses of environmental stressors with mapping of ecosystem services for all five Great Lakes. Cumulative ecosystem stress is highest in near-shore habitats, but also extends offshore in Lakes Erie, Ontario, and Michigan. Variation in cumulative stress is driven largely by spatial concordance among multiple stressors, indicating the importance of considering all stressors when planning restoration activities. In addition, highly stressed areas reflect numerous different combinations of stressors rather than a single suite of problems, suggesting that a detailed understanding of the stressors needing alleviation could improve restoration planning. We also find that many important areas for fisheries and recreation are subject to high stress, indicating that ecosystem degradation could be threatening key services. Current restoration efforts have targeted high-stress sites almost exclusively, but generally without knowledge of the full range of stressors affecting these locations or differences among sites in service provisioning. Our results demonstrate that joint spatial analysis of stressors and ecosystem services can provide a critical foundation for maximizing social and ecological benefits from restoration investments.


Frontiers in Ecology and the Environment | 2009

Managing for ocean biodiversity to sustain marine ecosystem services

Stephen R. Palumbi; Paul A. Sandifer; J. David Allan; Michael W. Beck; Daphne G. Fautin; Michael J. Fogarty; Benjamin S. Halpern; Lewis S. Incze; Jo-Ann C. Leong; Elliott Norse; John J. Stachowicz; Diana H. Wall

Managing a complex ecosystem to balance delivery of all of its services is at the heart of ecosystem-based management. But how can this balance be accomplished amidst the conflicting demands of stakeholders, managers, and policy makers? In marine ecosystems, several common ecological mechanisms link biodiversity to ecosystem functioning and to a complex of essential services. As a result, the effects of preserving diversity can be broadly beneficial to a wide spectrum of important ecosystem processes and services, including fisheries, water quality, recreation, and shoreline protection. A management system that conserves diversity will help to accrue more “ecoservice capital” for human use and will maintain a hedge against unanticipated ecosystem changes from natural or anthropogenic causes. Although maintenance of biodiversity cannot be the only goal for ecosystem-based management, it could provide a common currency for evaluating the impacts of different human activities on ecosystem functioning and can...


Oecologia | 1984

The importance of predation, substrate and spatial refugia in determining lotic insect distributions

Alexander S. Flecker; J. David Allan

An experiment was conducted to evaluate the interaction between predation, substrate, and spatial refugia in the organization of a stream insect community (Reeds Creek, Pendleton Co., West Virginia). Patterns of insect colonization were compared between fish exclusion cages and open controls that allowed access to vertebrate predators. Each cage contained 4 different substrates that varied in the relative amount of spatial refugia. Fish had little influence on the diversity or abundance of any insect taxa, even when spatial refugia were limited. The only significant effect due to predation, was an increased diversity of large (>8 mm) invertebrates in the absence of predators. However, because these taxa were relatively rare, the overall role of fish predation on insect community structure was minimal.In contrast, substrate had a marked effect on insect colonization. Insects were always more abundant (number/basket) on loose substrates containing large numbers of interstitial spaces, compared to cement-embedded substrates with few refuges available. In addition, invertebrates were more abundant on loose gravel compared to loose cobbles. Howver, when substrate “preferencesrd were examined according to insect density (number/m2), loose cobbles were generally the preferred substrate. The present experiment rejects the hypothesis that patterns of substrate colonization can be explained as differential insect mortality by predators, due to varying amounts of refugia. Alternative mechanisms such as differing amounts of trapped detritus and substrate surface area may account for substrate “preference”.

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Haejin Han

University of Michigan

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Peter B. McIntyre

University of Wisconsin-Madison

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Dana M. Infante

Michigan State University

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N. LeRoy Poff

Colorado State University

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