James M. Cook
University of Sydney
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Featured researches published by James M. Cook.
Heredity | 1993
James M. Cook
The haploid males and diploid females of Hymenoptera have all chromosomes in the same proportions. This rules out most familiar sex-determining mechanisms, which rely on dosage differences at sex determination loci. Two types of model — genie balance and complementary sex determination (CSD) — have been invoked for Hymenoptera. Experimental studies provide no good evidence for genie balance models, which are contradicted by the detection of diploid males in 33 disparate species. Furthermore, recent advances have shown that sex determination in the best-studied diploid animals does not depend on genie balance, removing the original justification for hymenopteran genie balance models. Instead, several Hymenoptera have single-locus CSD. In this system, sex locus heterozyotes are female while homozygotes and hemizygotes are male. Single-locus CSD does not apply to several inbreeding species and this probably reflects selection against the regular production of diploid males, which are sterile. A multilocus CSD model, in which heterozygosity at any one of several sex loci leads to female development has also been proposed. To date, multilocus CSD has not been demonstrated but several biases against its detection must be considered. CSD can apply to thelytokous races as long as the cytogenetic mechanism permits retention of sex locus heterozygosity. However, some thelytokous races clearly do not have CSD. The distribution of species with and without CSD suggests that this form of sex determination may be ancestral in the Hymenoptera. However, phylogenetic analyses are hindered by the lack of data from several superfamilies and the fact that the internal phylogeny of the Hymenoptera remains controversial.
Trends in Ecology and Evolution | 1995
James M. Cook; Ross H. Crozier
The Hymenoptera (ants, bees, wasps and sawflies) display a great variety of social systems and sex ratios and have played a key role in the development and testing of many evolutionary models. Traditionally, considerable emphasis was placed on the fact that hymenopterans have haploid males and diploid females but it is now clear that many species also regularly produce sterile, diploid males. Recent studies explore the diverse ways in which production of these diploid males influences selection on mating systems, sex ratios and social behaviour.
Trends in Ecology and Evolution | 2003
James M. Cook; Jean-Yves Rasplus
The intimate mutualism between fig wasps and figs has long captivated biologists, and new phylogenies are now uncovering its evolutionary history. Fig-pollinating wasps evolved just once, but fig parasitism has evolved repeatedly and convergently. Figs and their pollinators appear to have co-speciated considerably, but not invariably, because the famous one-to-one rule of specificity is often broken. Some key traits of figs and pollinators show impressive correlated evolution, but the resolution of conflicts that threaten the stability of the mutualism remains controversial.
Proceedings of the Royal Society of London B: Biological Sciences | 2005
Nina Rønsted; George D. Weiblen; James M. Cook; Nicolas Salamin; Carlos A. Machado; Vincent Savolainen
Figs (Ficus; ca 750 species) and fig wasps (Agaoninae) are obligate mutualists: all figs are pollinated by agaonines that feed exclusively on figs. This extraordinary symbiosis is the most extreme example of specialization in a plant–pollinator interaction and has fuelled much speculation about co-divergence. The hypothesis that pollinator specialization led to the parallel diversification of fig and pollinator lineages (co-divergence) has so far not been tested due to the lack of robust and comprehensive phylogenetic hypotheses for both partners. We produced and combined the most comprehensive molecular phylogenetic trees to date with fossil data to generate independent age estimates for fig and pollinator lineages, using both non-parametric rate smoothing and penalized likelihood dating methods. Molecular dating of ten pairs of interacting lineages provides an unparalleled example of plant–insect co-divergence over a geological time frame spanning at least 60 million years.
Molecular Ecology | 1998
Stuart A. West; James M. Cook; John H. Werren; H. C. J. Godfray
Wolbachia form a group of intracellular bacteria that alter reproduction in their arthropod hosts. Two major phylogenetic subdivisions (A and B) of Wolbachia occur. Using a polymerase chain reaction assay we surveyed for the A and B group Wolbachia in 82 insect species from two temperate host–parasitoid communities (food webs) and a general collection of Lepidoptera caught at a light trap. One host–parasitoid community was based around leaf‐mining Lepidoptera, and the other around Aphids. We found that: (i) 22.0% of insects sampled were infected with Wolbachia; and (ii) the prevalence and type (A or B) of Wolbachia infection differed significantly between communities and taxonomic groups. We obtained DNA sequences from the ftsZ gene for the group B Wolbachia found in six leaf‐mining species and one of their parasitoids, as well as four of the Lepidoptera caught by a light trap. Taken together, the results of our survey and phylogenetic analyses of the sequence data suggest that host–parasitoid transfer of Wolbachia is not the major route through which the species we have examined become infected. In addition, the Wolbachia strains observed in five leaf‐mining species from the same genus were not closely related, indicating that transfer between species has not occurred due to a shared feeding niche or cospeciation.
Systematic Biology | 2012
Astrid Cruaud; Nina Rønsted; Bhanumas Chantarasuwan; Lien-Siang Chou; Wendy L. Clement; Arnaud Couloux; Benjamin R. Cousins; Gwenaëlle Genson; Rhett D. Harrison; Paul Hanson; Martine Hossaert-McKey; Roula Jabbour-Zahab; Emmanuelle Jousselin; Carole Kerdelhué; Finn Kjellberg; Carlos Lopez-Vaamonde; John Peebles; Yan-Qiong Peng; Rodrigo Augusto Santinelo Pereira; Tselil Schramm; Rosichon Ubaidillah; Simon van Noort; George D. Weiblen; Da Rong Yang; Anak Yodpinyanee; Ran Libeskind-Hadas; James M. Cook; Jean Yves Rasplus; Vincent Savolainen
It is thought that speciation in phytophagous insects is often due to colonization of novel host plants, because radiations of plant and insect lineages are typically asynchronous. Recent phylogenetic comparisons have supported this model of diversification for both insect herbivores and specialized pollinators. An exceptional case where contemporaneous plant-insect diversification might be expected is the obligate mutualism between fig trees (Ficus species, Moraceae) and their pollinating wasps (Agaonidae, Hymenoptera). The ubiquity and ecological significance of this mutualism in tropical and subtropical ecosystems has long intrigued biologists, but the systematic challenge posed by >750 interacting species pairs has hindered progress toward understanding its evolutionary history. In particular, taxon sampling and analytical tools have been insufficient for large-scale cophylogenetic analyses. Here, we sampled nearly 200 interacting pairs of fig and wasp species from across the globe. Two supermatrices were assembled: on an average, wasps had sequences from 77% of 6 genes (5.6 kb), figs had sequences from 60% of 5 genes (5.5 kb), and overall 850 new DNA sequences were generated for this study. We also developed a new analytical tool, Jane 2, for event-based phylogenetic reconciliation analysis of very large data sets. Separate Bayesian phylogenetic analyses for figs and fig wasps under relaxed molecular clock assumptions indicate Cretaceous diversification of crown groups and contemporaneous divergence for nearly half of all fig and pollinator lineages. Event-based cophylogenetic analyses further support the codiversification hypothesis. Biogeographic analyses indicate that the present-day distribution of fig and pollinator lineages is consistent with a Eurasian origin and subsequent dispersal, rather than with Gondwanan vicariance. Overall, our findings indicate that the fig-pollinator mutualism represents an extreme case among plant-insect interactions of coordinated dispersal and long-term codiversification. [Biogeography; coevolution; cospeciation; host switching; long-branch attraction; phylogeny.].
Proceedings of the Royal Society of London B: Biological Sciences | 1998
Graham N. Stone; James M. Cook
Galls are highly specialized plant tissues whose development is induced by another organism. The most complex and diverse galls are those induced on oak trees by gallwasps (Hymenoptera: Cynipidae: Cynipini), each species inducing a characteristic gall structure. Debate continues over the possible adaptive significance of gall structural traits; some protect the gall inducer from attack by natural enemies, although the adaptive significance of others remains undemonstrated. Several gall traits are shared by groups of oak gallwasp species. It remains unknown whether shared traits represent (i) limited divergence from a shared ancestral gall form, or (ii) multiple cases of independent evolution. Here we map gall character states onto a molecular phylogeny of the oak cynipid genus Andricus, and demonstrate three features of the evolution of gall structure: (i) closely related species generally induce galls of similar structure; (ii) despite this general pattern, closely related species can induce markedly different galls; and (iii) several gall traits (the presence of many larval chambers in a single gall structure, surface resins, surface spines and internal air spaces) of demonstrated or suggested adaptive value to the gallwasp have evolved repeatedly. We discuss these results in the light of existing hypotheses on the adaptive significance of gall structure.
Evolution | 2003
Carlos Lopez-Vaamonde; H. Charles J. Godfray; James M. Cook
Abstract We used nuclear 28S rDNA sequence data to estimate the phylogeny of 77 leaf-mining Phyllonorycter (Gracillariidae) moth species, including all 55 British species, feeding on 44 different plant genera. There was strong support for both the monophyly of Phyllonorycter and the placement of the genus Cameraria as its sister group. Host-plant use was mapped onto the moth phylogeny and investigated statistically in several ways. First, we show that the estimated level of cospeciation between leaf miners and their host plants is not greater than expected by chance, despite the physical intimacy of the association. Nevertheless, the pattern of host-plant use is far from random, with closely related Phyllonorycter species generally feeding on closely related plants. However, although Phyllonorycter species from a given host plant tend to form distinct clades, there is also statistical support for multiple independent colonizations of some host-plant taxa (e.g. the order Rosales and the genus Corylus). Despite numerous host shifts, most Phyllonorycter species feed on trees and the few species that attack shrubs or herbs have mostly acquired these habits independently. There is also limited evidence that host shifts to herbs are more likely from shrubs than from trees. Similarly, most species mine the lower surface of leaves but the few upper-surface miners have each evolved the habit independently. Consequently, these shifts to new adaptive zones have not led to substantial radiations.
Proceedings of the Royal Society of London B: Biological Sciences | 1997
James M. Cook; S. G. Compton; Edward Allen Herre; Stuart A. West
The dimorphisms in morphology and behaviour of male fig wasps are among the most extreme in the animal kingdom, and offer excellent opportunities to test the predictions of certain sexual selection models. Winged males resemble their conspecific females closely, but wingless males are so divergent in form that they have repeatedly been classified into different taxa. Wingless males mate within their natal fig fruits, whereas winged males disperse to mate. Individual species may have winged males, wingless males or both morphs. A key hypothesis proposes that sexual selection on male mating opportunities favours winged males in species with small broods and wingless males in species with large broods. Using data from 114 species in 33 genera, we show that both simple and formal comparative analyses support the correlated evolution of large brood size and male winglessness. Theoretical models further predict that, in male dimorphic species, the proportion of winged males should equal (in cases without local mate competition) or exceed (in cases with local mate competition) the proportion of females developing in fig fruits without wingless males. These predictions are met by eight out of nine male dimorphic species studied. Taken together, the patterns across all species, and between different male dimorphic species, strongly support sexual selection on mating opportunities as the major determinant of male morph ratios in fig wasps.
Evolution | 2009
Graham N. Stone; Antonio Hernandez-Lopez; James A. Nicholls; Erica di Pierro; Juli Pujade-Villar; George Melika; James M. Cook
Diversification of insect herbivores is often associated with coevolution between plant toxins and insect countermeasures, resulting in a specificity that restricts host plant shifts. Gall inducers, however, bypass plant toxins and the factors influencing host plant associations in these specialized herbivores remain unclear. We reconstructed the evolution of host plant associations in Western Palaearctic oak gallwasps (Cynipidae: Cynipini), a species-rich lineage of specialist herbivores on oak (Quercus). (1) Bayesian analyses of sequence data for three genes revealed extreme host plant conservatism, with inferred shifts between major oak lineages (sections Cerris and Quercus) closely matching the minimum required to explain observed diversity. It thus appears that the coevolutionary demands of gall induction constrain host plant shifts, both in cases of mutualism (e.g., fig wasps, yucca moths) and parasitism (oak gallwasps). (2) Shifts between oak sections occurred independently in sexual and asexual generations of the gallwasp lifecycle, implying that these can evolve independently. (3) Western Palaearctic gallwasps associated with sections Cerris and Quercus diverged at least 20 million years ago (mya), prior to the arrival of oaks in the Western Palaearctic from Asia 5–7 mya. This implies an Asian origin for Western Palaearctic gallwasps, with independent westwards range expansion by multiple lineages.